Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq13731 232 2e-55 seq32170 154 4e-32 seq22 105 2e-17 seq840 102 2e-16 seq11345 100 7e-16 >seq13731 Length=15303 Score = 232 bits (256), Expect = 2e-55 Identities = 586/880 (67%), Gaps = 16/880 (2%) Strand=Plus/Minus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | ||||||||||| |||||||| ||||||||||||||| | |||||||| ||| Sbjct 2343 AATGGCAAAATTGTTGAACGTCCGCAGCACATGTTAATGCGTGTTTCCATTGGTATTCAT 2284 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACG 363552 | ||| |||||||||| |||||||| ||||| | || | || ||||| Sbjct 2283 GGTGAAGATATTGATGCCGCTATTGAAACTTATAACTTGCTTTCGGAACGCTATTTCACA 2224 Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 || ||| | |||||| | | ||||| ||||| | || || |||| || || || Sbjct 2223 CATGCCTCTCCAACACTCTTTGCTGCTGCCACTCGCCAACCGCAATTGTCATCCTGTTTC 2164 Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA-CACTTAAGAATTGTGC 363671 || | | ||| | |||||||| || ||||| ||| ||| | | | ||||| Sbjct 2163 CTATTGACTATGGCTGGTGATTCCATTGATGGTATATTT-ACATCTGCCCACCAATGTGC 2105 Query 363672 TCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--G 363729 | | ||||||||| ||| || || ||||| || |||| | || ||| | | Sbjct 2104 TTTAATTTCCAAGTCTGCTGGTGGCATTGGACTAAATGTCCATTGCATACGAGCAAAGGG 2045 Query 363730 AACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 |||| || |||| |||||| || || ||||| |||| || ||| | || || Sbjct 2044 CACAG---CAATCGCGGGCACAAATGGCACTTCAAATGGTTTGGTACCAATGTTGCGGGT 1988 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 || | || ||| | ||||| || |||||||| || ||||| || || ||||| Sbjct 1987 ATTCAATAACGTTGCACGTTACGTAGATCAGGGTGGTGGCAAGCGGCCTGGCGCCTTTGC 1928 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 || || | || || ||||| ||||||||||||||| | || | ||| || || Sbjct 1927 CATTTACTTGGAACCATGGCATGCAGATATTTTTGAGTTTTTGGATTTGAAGAAGAATAC 1868 Query 363909 GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT 363968 |||||||| || || || | ||| | || ||||| | ||| | | || || Sbjct 1867 TGGAAAAGAAGAGCACCGAGCCAGAGATTTATTTTATGCTTTGTGGATACCAGATTTATT 1808 Query 363969 TATGAAGCGCGTGGAGGCAGGTAA--GA-ATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 ||| | || ||||| || ||| || | |||||| | | || ||||| ||||||| Sbjct 1807 CATGGAACGTGTGGA---AGCTAACGGAGAGTGGTCATTGATGTGTCCACATAAATGTCC 1751 Query 364026 AGGTCTTTC-CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 || ||| | || || ||||| || || | | |||| |||||||||| || Sbjct 1750 TGG-CTTACATGAGGTTTGGGGCGAAGAATTCGAAAAATTATATACAAAGTATGAAAAGG 1692 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 | ||| ||| |||||| | || || | || ||||| |||||||| || || | Sbjct 1691 AAGGACGCGCTAATAAGACGGTGAAAGCTCAAAGTCTTTGGTTCGCCATCATTGAATCCC 1632 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 || | ||||| || ||||| |||||||||||||| ||| | || || | || || | Sbjct 1631 AGGTGGAGACCGGTACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATC 1572 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 |||| | |||| || ||| | ||||| ||||| || || ||| | ||||| | | Sbjct 1571 AGCAAAATATTGGCACCATTAAATGCAGCAATCTATGCACTGAAATTGTCGAATATTCTG 1512 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 | || || ||| || ||||| ||| | || || ||||| Sbjct 1511 CACCTGATGAGGTGGCTGTATGCAACTTAGCATCAATCGC 1472 Score = 96.9 bits (106), Expect = 9e-15 Identities = 124/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049 |||||||| ||||||||||| || | |||| ||| | ||||| || ||||| || Sbjct 783 TACAAAACTGTATGGGAAATCTCGGTTAAAACTTCAATTAAAATGGCAGCAGATCGGGGA 724 Query 365050 GCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTC--AGCCAACCTCCGCCA 365107 || || ||| || ||||| ||||||||| || |||| | | |||||| || | || Sbjct 723 GCATTCATCGACCAAAGCCAATCGTTTAAC--ATACATGTCGCAGAGCCAAACTATGGCA 666 Query 365108 AGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | || || || || |||||||| || |||||| | ||||| || ||||| Sbjct 665 AACTAACTTCTATACATTTCTATGGCTGGAAAGCGGGTCTAAAAACAGG 617 >seq32170 Length=3971 Score = 154 bits (170), Expect = 4e-32 Identities = 336/498 (67%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 363591 TCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTT 363650 ||| ||| |||| || |||||||| || | | || || || || ||||| |||| Sbjct 3430 TCCGCAGCTGTCCTCCTGCTTTCTGCTGACGCTCTCCGAGGACTCGATTGAGGGCATCTA 3489 Query 363651 TGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGA 363709 ||||| || ||| | || || | || |||||| || ||||| ||||| || | || Sbjct 3490 CGACACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCAACG- 3548 Query 363710 TCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGC 363769 | ||| | || || | || ||||| |||||||| || | ||||||| Sbjct 3549 TGCACTGCATCCGCGCCGCGGGCACCTACATCAGCGGCACAAACGGCGTCAGCAATGGGC 3608 Query 363770 TGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAA 363829 |||| || ||||| || || | |||| || || | ||||| |||||||| || | Sbjct 3609 TGGTGCCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGGAACA 3668 Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 ||||| ||||||||||| || || ||||| || || ||||| || || ||||||| Sbjct 3669 AGCGCCCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCGACATCTTCGAGTTTC 3728 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 | || || || || ||||| || ||||| | ||||| || || || ||||| || Sbjct 3729 TCGACCTGCGCAAGAACACCGGCTCGGAGGAGCTCCGTGCCCGCGACCTCTTCTACGCCA 3788 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT-TGGTCACTCTTT 364008 | ||||| | |||| |||||||||||||| |||| || | | ||||| || | Sbjct 3789 TGTGGGTGCCGGACCTCTTTATGAAGCGCGTCCAGGC-GGACGGCGTCTGGTCGCTGATG 3847 Query 364009 TGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068 ||||| ||||| || || || || || ||||| || | || || | || ||| Sbjct 3848 TGCCCGCACGAGTGCCCCGGCCTGCAGGACTGCTGGGGCGAGGCCTTTGAGGAGCTGTAC 3907 Query 364069 GAAAAGTATGAATCGGAG 364086 || ||||| || ||||| Sbjct 3908 GAGAAGTACGAGGCGGAG 3925 >seq22 Length=933496 Score = 105 bits (116), Expect = 2e-17 Identities = 227/330 (69%), Gaps = 11/330 (3%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTG-TG 22546 |||||| | || |||||||| | ||||||||||||||||||| ||| || ||||| | Sbjct 329479 GAACGTATAATAGCATTTGCCGCGGTTGAAGGCATTTTCTTTAGTGGCAG--TTTTGCTT 329536 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 ||||||||||||| || ||||| | | ||||| ||| | || || || |||||| ||| Sbjct 329537 CAATCTTTTGGCTGAAGAAACGGGGCCTAATGCCTGGTTTGACATTCTCTAATGAGCTAA 329596 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCA 22666 || | || || || | ||| ||||||||| || || | | || | || ||| Sbjct 329597 TTTCAAGGGACGAAGGATTACATTGCGATTTTGCTTGCCTGATGT-TC--CAACACCTCA 329653 Query 22667 TTCATAAACTTCCA-TATGAAAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTGA 22724 |||| || | | | || | | | | | |||| || ||| | | || ||| || |||| Sbjct 329654 TTCAGAAGC--CAAGTAGGGACCGTATTATTGAAATCATTGCTGAAGCTGTTAAAATTGA 329711 Query 22725 ACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAAT 22784 || ||| | || || ||||| || | | | ||||| || ||| | || ||| Sbjct 329712 ACAAGAATTCTTAACTGATGCCTTACCTGTGAATTTGATTGGCATGAATTGCCAACTAAT 329771 Query 22785 GAGTACATATATTAAATTTGTTGCAGATCG 22814 | | |||||| ||||||| |||||||| Sbjct 329772 GTCTGATTATATTGAATTTGTGGCAGATCG 329801 >seq840 Length=183542 Score = 102 bits (112), Expect = 2e-16 Identities = 302/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | |||||||||||||||||||| ||||| ||||||||| | |||| ||| ||| Sbjct 94865 AATGGCAAAATTGTTGAACGCCCGCAGCACATGTTGATGCGTGTTTCCATTGATATTCAT 94924 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACG 363552 | ||| |||||||| | ||| |||| ||||| | || | || ||||| Sbjct 94925 GGTGAAGATATTGATGCCACTATTTAAACTTATAACTTGCTTTCGGAACGCTATTTCACA 94984 Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 || ||| | |||||| | | ||||| ||||| | || || |||| || || ||| Sbjct 94985 CATGCCTCTCCAACACTCTTTGCTGCTGCCACTCGCCAACCGCAATTGTCATCCTGTTTT 95044 Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA-CACTTAAGAATTGTGC 363671 || | | ||| | |||| || || ||||| ||| ||| | | | ||||| Sbjct 95045 CTATTGACTATGGCTGGTGATTTTATTGATGGTATATTT-ACATCTGCCCACCAATGTGC 95103 Query 363672 TCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--G 363729 | | |||||| || ||| || || ||||| || |||| | || ||| | | Sbjct 95104 TTTAATTTCCCAGTTTGCTGGTGGCATTGGACTAAATGTCCATTGCATGCGCGCAAAGGG 95163 Query 363730 AACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 ||||| || |||| |||||| || || ||||| |||| || ||| | || || Sbjct 95164 AACAG---CAATCGCGGGCACAAATGGCACTTCAAATGGTTTGGTACCAATGTTGCGGGT 95220 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 || | || ||| | || || | |||||||| || ||| | || || ||||| Sbjct 95221 ATTCAATAACGTTGCTCGTTATGTACATCAGGGTGGTGGCAAGAGGCCTGGCGCCTTTGC 95280 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTT 363888 || || | || || | || ||||||||||||||| Sbjct 95281 CATTTACTTGGAACCATGAAACGCAGATATTTTTGAGTTT 95320 >seq11345 Length=19302 Score = 100 bits (110), Expect = 7e-16 Identities = 309/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | |||||||||||||||||||| ||||| |||||| || | |||| ||| ||| Sbjct 11004 AATGGCAAAATTGTTGAACGCCCGCAGCACATGTTGATGCGTATTTCCATTGATATTCAT 11063 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAA---GCTTCTAAGTGCTCGTGTATTC 363549 | ||| |||| ||||| |||||||| ||||| |||| | | | | | | ||| Sbjct 11064 AGTGAAGATATTGAAGCCGCTATTGAAACTTATAACTCGCTT-TCGGAACGC-TAT-TTC 11120 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || || ||| | | |||| | | ||||| |||| || | || |||| || || Sbjct 11121 ACACATGCCTCTCGAACACTCTTTGCTGCTGCTACTCCCAA-ACGCAATTGTCATCCTGT 11179 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA-CACTTAAGAATTG 363668 ||||| | | ||| | |||||||| || ||||| ||| ||| | | | || Sbjct 11180 TTTCTATTGACTATGGCTGGTGATTCCATAGATGGTATATTT-ACATCTGCCCACCAATG 11238 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA 363728 |||| | ||||||||| ||| || || ||||| || |||| | || ||| | Sbjct 11239 TGCTTTAATTTCCAAGTTTGCTGGTGGCATTGGACTAAATGTCCATTGAATACGCGCAAA 11298 Query 363729 --GAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | |||| || |||| |||||| || || | ||| |||| || ||| | || Sbjct 11299 GGGCACAG---CAATCGCGGGCACAAATGGCACTTCAACTGGTTTGGTACCAATGTTGCG 11355 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || | || ||| | || || || |||||||| |||| | || || || Sbjct 11356 GGTATTCAATAACGTTGCTCGTTATGTAGATCAGGGTGGTAGAAAAAGGCCTGGCGCCTT 11415 Query 363846 TGCTATGTATCTCGAGCCTCAT-CATGCCGATATTTTTGAGTTT 363888 ||| || || | || | ||| ||||| ||||||||||||||| Sbjct 11416 TGCCATTTACTTGGAAC--CATGCATGCAGATATTTTTGAGTTT 11457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301906278775940