Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 232 2e-55
seq32170 154 4e-32
seq22 105 2e-17
seq840 102 2e-16
seq11345 100 7e-16
>seq13731
Length=15303
Score = 232 bits (256), Expect = 2e-55
Identities = 586/880 (67%), Gaps = 16/880 (2%)
Strand=Plus/Minus
Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492
||||| | ||||||||||| |||||||| ||||||||||||||| | |||||||| |||
Sbjct 2343 AATGGCAAAATTGTTGAACGTCCGCAGCACATGTTAATGCGTGTTTCCATTGGTATTCAT 2284
Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACG 363552
| ||| |||||||||| |||||||| ||||| | || | || |||||
Sbjct 2283 GGTGAAGATATTGATGCCGCTATTGAAACTTATAACTTGCTTTCGGAACGCTATTTCACA 2224
Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612
|| ||| | |||||| | | ||||| ||||| | || || |||| || || ||
Sbjct 2223 CATGCCTCTCCAACACTCTTTGCTGCTGCCACTCGCCAACCGCAATTGTCATCCTGTTTC 2164
Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA-CACTTAAGAATTGTGC 363671
|| | | ||| | |||||||| || ||||| ||| ||| | | | |||||
Sbjct 2163 CTATTGACTATGGCTGGTGATTCCATTGATGGTATATTT-ACATCTGCCCACCAATGTGC 2105
Query 363672 TCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--G 363729
| | ||||||||| ||| || || ||||| || |||| | || ||| | |
Sbjct 2104 TTTAATTTCCAAGTCTGCTGGTGGCATTGGACTAAATGTCCATTGCATACGAGCAAAGGG 2045
Query 363730 AACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788
|||| || |||| |||||| || || ||||| |||| || ||| | || ||
Sbjct 2044 CACAG---CAATCGCGGGCACAAATGGCACTTCAAATGGTTTGGTACCAATGTTGCGGGT 1988
Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848
|| | || ||| | ||||| || |||||||| || ||||| || || |||||
Sbjct 1987 ATTCAATAACGTTGCACGTTACGTAGATCAGGGTGGTGGCAAGCGGCCTGGCGCCTTTGC 1928
Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908
|| || | || || ||||| ||||||||||||||| | || | ||| || ||
Sbjct 1927 CATTTACTTGGAACCATGGCATGCAGATATTTTTGAGTTTTTGGATTTGAAGAAGAATAC 1868
Query 363909 GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT 363968
|||||||| || || || | ||| | || ||||| | ||| | | || ||
Sbjct 1867 TGGAAAAGAAGAGCACCGAGCCAGAGATTTATTTTATGCTTTGTGGATACCAGATTTATT 1808
Query 363969 TATGAAGCGCGTGGAGGCAGGTAA--GA-ATTGGTCACTCTTTTGCCCACACGAATGTCC 364025
||| | || ||||| || ||| || | |||||| | | || ||||| |||||||
Sbjct 1807 CATGGAACGTGTGGA---AGCTAACGGAGAGTGGTCATTGATGTGTCCACATAAATGTCC 1751
Query 364026 AGGTCTTTC-CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084
|| ||| | || || ||||| || || | | |||| |||||||||| ||
Sbjct 1750 TGG-CTTACATGAGGTTTGGGGCGAAGAATTCGAAAAATTATATACAAAGTATGAAAAGG 1692
Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144
| ||| ||| |||||| | || || | || ||||| |||||||| || || |
Sbjct 1691 AAGGACGCGCTAATAAGACGGTGAAAGCTCAAAGTCTTTGGTTCGCCATCATTGAATCCC 1632
Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204
|| | ||||| || ||||| |||||||||||||| ||| | || || | || || |
Sbjct 1631 AGGTGGAGACCGGTACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATC 1572
Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264
|||| | |||| || ||| | ||||| ||||| || || ||| | ||||| | |
Sbjct 1571 AGCAAAATATTGGCACCATTAAATGCAGCAATCTATGCACTGAAATTGTCGAATATTCTG 1512
Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304
| || || ||| || ||||| ||| | || || |||||
Sbjct 1511 CACCTGATGAGGTGGCTGTATGCAACTTAGCATCAATCGC 1472
Score = 96.9 bits (106), Expect = 9e-15
Identities = 124/169 (73%), Gaps = 4/169 (2%)
Strand=Plus/Minus
Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049
|||||||| ||||||||||| || | |||| ||| | ||||| || ||||| ||
Sbjct 783 TACAAAACTGTATGGGAAATCTCGGTTAAAACTTCAATTAAAATGGCAGCAGATCGGGGA 724
Query 365050 GCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTC--AGCCAACCTCCGCCA 365107
|| || ||| || ||||| ||||||||| || |||| | | |||||| || | ||
Sbjct 723 GCATTCATCGACCAAAGCCAATCGTTTAAC--ATACATGTCGCAGAGCCAAACTATGGCA 666
Query 365108 AGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| || || || || |||||||| || |||||| | ||||| || |||||
Sbjct 665 AACTAACTTCTATACATTTCTATGGCTGGAAAGCGGGTCTAAAAACAGG 617
>seq32170
Length=3971
Score = 154 bits (170), Expect = 4e-32
Identities = 336/498 (67%), Gaps = 4/498 (1%)
Strand=Plus/Plus
Query 363591 TCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTT 363650
||| ||| |||| || |||||||| || | | || || || || ||||| ||||
Sbjct 3430 TCCGCAGCTGTCCTCCTGCTTTCTGCTGACGCTCTCCGAGGACTCGATTGAGGGCATCTA 3489
Query 363651 TGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGA 363709
||||| || ||| | || || | || |||||| || ||||| ||||| || | ||
Sbjct 3490 CGACACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCAACG- 3548
Query 363710 TCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGC 363769
| ||| | || || | || ||||| |||||||| || | |||||||
Sbjct 3549 TGCACTGCATCCGCGCCGCGGGCACCTACATCAGCGGCACAAACGGCGTCAGCAATGGGC 3608
Query 363770 TGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAA 363829
|||| || ||||| || || | |||| || || | ||||| |||||||| || |
Sbjct 3609 TGGTGCCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGGAACA 3668
Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889
||||| ||||||||||| || || ||||| || || ||||| || || |||||||
Sbjct 3669 AGCGCCCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCGACATCTTCGAGTTTC 3728
Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949
| || || || || ||||| || ||||| | ||||| || || || ||||| ||
Sbjct 3729 TCGACCTGCGCAAGAACACCGGCTCGGAGGAGCTCCGTGCCCGCGACCTCTTCTACGCCA 3788
Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT-TGGTCACTCTTT 364008
| ||||| | |||| |||||||||||||| |||| || | | ||||| || |
Sbjct 3789 TGTGGGTGCCGGACCTCTTTATGAAGCGCGTCCAGGC-GGACGGCGTCTGGTCGCTGATG 3847
Query 364009 TGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068
||||| ||||| || || || || || ||||| || | || || | || |||
Sbjct 3848 TGCCCGCACGAGTGCCCCGGCCTGCAGGACTGCTGGGGCGAGGCCTTTGAGGAGCTGTAC 3907
Query 364069 GAAAAGTATGAATCGGAG 364086
|| ||||| || |||||
Sbjct 3908 GAGAAGTACGAGGCGGAG 3925
>seq22
Length=933496
Score = 105 bits (116), Expect = 2e-17
Identities = 227/330 (69%), Gaps = 11/330 (3%)
Strand=Plus/Plus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTG-TG 22546
|||||| | || |||||||| | ||||||||||||||||||| ||| || ||||| |
Sbjct 329479 GAACGTATAATAGCATTTGCCGCGGTTGAAGGCATTTTCTTTAGTGGCAG--TTTTGCTT 329536
Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606
||||||||||||| || ||||| | | ||||| ||| | || || || |||||| |||
Sbjct 329537 CAATCTTTTGGCTGAAGAAACGGGGCCTAATGCCTGGTTTGACATTCTCTAATGAGCTAA 329596
Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCA 22666
|| | || || || | ||| ||||||||| || || | | || | || |||
Sbjct 329597 TTTCAAGGGACGAAGGATTACATTGCGATTTTGCTTGCCTGATGT-TC--CAACACCTCA 329653
Query 22667 TTCATAAACTTCCA-TATGAAAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTGA 22724
|||| || | | | || | | | | | |||| || ||| | | || ||| || ||||
Sbjct 329654 TTCAGAAGC--CAAGTAGGGACCGTATTATTGAAATCATTGCTGAAGCTGTTAAAATTGA 329711
Query 22725 ACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAAT 22784
|| ||| | || || ||||| || | | | ||||| || ||| | || |||
Sbjct 329712 ACAAGAATTCTTAACTGATGCCTTACCTGTGAATTTGATTGGCATGAATTGCCAACTAAT 329771
Query 22785 GAGTACATATATTAAATTTGTTGCAGATCG 22814
| | |||||| ||||||| ||||||||
Sbjct 329772 GTCTGATTATATTGAATTTGTGGCAGATCG 329801
>seq840
Length=183542
Score = 102 bits (112), Expect = 2e-16
Identities = 302/460 (66%), Gaps = 8/460 (2%)
Strand=Plus/Plus
Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492
||||| | |||||||||||||||||||| ||||| ||||||||| | |||| ||| |||
Sbjct 94865 AATGGCAAAATTGTTGAACGCCCGCAGCACATGTTGATGCGTGTTTCCATTGATATTCAT 94924
Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACG 363552
| ||| |||||||| | ||| |||| ||||| | || | || |||||
Sbjct 94925 GGTGAAGATATTGATGCCACTATTTAAACTTATAACTTGCTTTCGGAACGCTATTTCACA 94984
Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612
|| ||| | |||||| | | ||||| ||||| | || || |||| || || |||
Sbjct 94985 CATGCCTCTCCAACACTCTTTGCTGCTGCCACTCGCCAACCGCAATTGTCATCCTGTTTT 95044
Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA-CACTTAAGAATTGTGC 363671
|| | | ||| | |||| || || ||||| ||| ||| | | | |||||
Sbjct 95045 CTATTGACTATGGCTGGTGATTTTATTGATGGTATATTT-ACATCTGCCCACCAATGTGC 95103
Query 363672 TCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--G 363729
| | |||||| || ||| || || ||||| || |||| | || ||| | |
Sbjct 95104 TTTAATTTCCCAGTTTGCTGGTGGCATTGGACTAAATGTCCATTGCATGCGCGCAAAGGG 95163
Query 363730 AACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788
||||| || |||| |||||| || || ||||| |||| || ||| | || ||
Sbjct 95164 AACAG---CAATCGCGGGCACAAATGGCACTTCAAATGGTTTGGTACCAATGTTGCGGGT 95220
Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848
|| | || ||| | || || | |||||||| || ||| | || || |||||
Sbjct 95221 ATTCAATAACGTTGCTCGTTATGTACATCAGGGTGGTGGCAAGAGGCCTGGCGCCTTTGC 95280
Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTT 363888
|| || | || || | || |||||||||||||||
Sbjct 95281 CATTTACTTGGAACCATGAAACGCAGATATTTTTGAGTTT 95320
>seq11345
Length=19302
Score = 100 bits (110), Expect = 7e-16
Identities = 309/464 (67%), Gaps = 18/464 (4%)
Strand=Plus/Plus
Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492
||||| | |||||||||||||||||||| ||||| |||||| || | |||| ||| |||
Sbjct 11004 AATGGCAAAATTGTTGAACGCCCGCAGCACATGTTGATGCGTATTTCCATTGATATTCAT 11063
Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAA---GCTTCTAAGTGCTCGTGTATTC 363549
| ||| |||| ||||| |||||||| ||||| |||| | | | | | | |||
Sbjct 11064 AGTGAAGATATTGAAGCCGCTATTGAAACTTATAACTCGCTT-TCGGAACGC-TAT-TTC 11120
Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609
|| || ||| | | |||| | | ||||| |||| || | || |||| || ||
Sbjct 11121 ACACATGCCTCTCGAACACTCTTTGCTGCTGCTACTCCCAA-ACGCAATTGTCATCCTGT 11179
Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA-CACTTAAGAATTG 363668
||||| | | ||| | |||||||| || ||||| ||| ||| | | | ||
Sbjct 11180 TTTCTATTGACTATGGCTGGTGATTCCATAGATGGTATATTT-ACATCTGCCCACCAATG 11238
Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA 363728
|||| | ||||||||| ||| || || ||||| || |||| | || ||| |
Sbjct 11239 TGCTTTAATTTCCAAGTTTGCTGGTGGCATTGGACTAAATGTCCATTGAATACGCGCAAA 11298
Query 363729 --GAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785
| |||| || |||| |||||| || || | ||| |||| || ||| | ||
Sbjct 11299 GGGCACAG---CAATCGCGGGCACAAATGGCACTTCAACTGGTTTGGTACCAATGTTGCG 11355
Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845
|| || | || ||| | || || || |||||||| |||| | || || ||
Sbjct 11356 GGTATTCAATAACGTTGCTCGTTATGTAGATCAGGGTGGTAGAAAAAGGCCTGGCGCCTT 11415
Query 363846 TGCTATGTATCTCGAGCCTCAT-CATGCCGATATTTTTGAGTTT 363888
||| || || | || | ||| ||||| |||||||||||||||
Sbjct 11416 TGCCATTTACTTGGAAC--CATGCATGCAGATATTTTTGAGTTT 11457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1301906278775940
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