Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq280 111 1e-19 seq2574 95.1 1e-14 seq21746 93.3 4e-14 seq76387 82.4 7e-11 >seq280 Length=341618 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| ||| | || || | || || || | | Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| || || || || ||||| || || || |||||| Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | || | || ||||||||| |||||||||| | | | | | |||||||||| Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||| ||||| | |||||||| Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGT 106043 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| ||| | || || | || || || | | Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| || || || || ||||| || || || |||||| Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | || | || ||||||||| |||||||||| | | | | | |||||||||| Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||| ||||| | |||||||| Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGT 114289 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | || ||| | || || ||| | Sbjct 105111 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCGTCA 105052 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||||||||| || || || |||||| Sbjct 105051 GACACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGATCAA 104992 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | || | || ||||||||| |||||||||| | | | | |||||||||| Sbjct 104991 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTTTGTCCGATTATAAC 104932 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || ||||| | ||||| || Sbjct 104931 ATCCAAAAGGAGTCTACCCTCCATTTGGT 104903 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||| ||| | || || | || || ||| | | Sbjct 105795 ATGCAGATATTTGTGAAGACCCTAACTGGTAAAACCATCACGTTGGAGGTTGAGCCATCC 105736 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | |||||| ||||| ||||| || || || ||||| ||||| Sbjct 105735 GACACCATTGAGAACGTCAAAGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 105676 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | || | || |||||||||||||||||||| | | | | | ||| || ||| Sbjct 105675 CAGCGTTTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAAC 105616 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || ||||| Sbjct 105615 ATCCAAAAGGAGTCTAC 105599 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||| ||| | || || | || || ||| | | Sbjct 114041 ATGCAGATATTTGTGAAGACCCTAACTGGTAAAACCATCACGTTGGAGGTTGAGCCATCC 113982 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | |||||| ||||| ||||| || || || ||||| ||||| Sbjct 113981 GACACCATTGAGAACGTCAAAGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 113922 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | | || | || |||||||||||||||||||| | | | | | ||| || ||| Sbjct 113921 CAGCGTTTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAAC 113862 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || ||||| Sbjct 113861 ATCCAAAAGGAGTCTAC 113845 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||||| ||| | || ||| | || || ||| | Sbjct 105339 ATGCAAATCTTCGTGAAGACCCTAACTGGTAAAACCATCACCTTGGAGGTTGAGCCGTCA 105280 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || ||||||||||| ||||| |||||| Sbjct 105279 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 105220 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| || ||| || ||| | ||||| | | | | | | || || ||| Sbjct 105219 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACCTTGTCGGACTACAAC 105160 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || ||||| | ||||| || Sbjct 105159 ATCCAAAAGGAGTCTACCCTCCATTTGGT 105131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||||| ||| | || ||| | || || ||| ||| | Sbjct 106023 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAG-CCATC 105965 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || ||| ||||| || || ||||| || || || ||||| Sbjct 105964 AGACACCATCGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 105905 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || |||||| || || ||||||| | | | | | || || || Sbjct 105904 GCAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAA 105845 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| ||||| || ||||| | ||||| || Sbjct 105844 CATCCAAAAGGAGTCTACTCTGCATTTGGT 105815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || ||||||| ||| | || ||| | || || ||| ||| | Sbjct 114269 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAG-CCATC 114211 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || ||| ||||| || || ||||| || || || ||||| Sbjct 114210 AGACACCATCGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 114151 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || |||||| || || ||||||| | | | | | || || || Sbjct 114150 GCAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAA 114091 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| ||||| || ||||| | ||||| || Sbjct 114090 CATCCAAAAGGAGTCTACTCTGCATTTGGT 114061 >seq2574 Length=80092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | || ||| |||| || ||| | Sbjct 59053 CAAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGCC 58994 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||||||| | || || ||||| ||||| || ||||| || || || Sbjct 58993 CAGCGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGA 58934 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| ||||||| | || ||||||||| ||||| || | | ||| | ||||| || Sbjct 58933 CCAGCAGCGACTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACGCTGAGCGACTA 58874 Query 24167 TAACATTCAAAA 24178 ||||| || || Sbjct 58873 CAACATCCAGAA 58862 >seq21746 Length=7614 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 23979 TAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAA 24038 ||| | ||||||||||| | || || |||||| | || || || | || || | || Sbjct 2184 TAGACGAACAAAATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAG 2243 Query 24039 GTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATA 24098 |||||| | ||||| ||||| | ||||| || || || |||||||| ||| Sbjct 2244 GTCGAGCCTTCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATA 2303 Query 24099 CCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTC 24158 || || |||||||| | |||||| || |||||||||| | ||||||| | | | Sbjct 2304 CCACCAGATCAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTG 2363 Query 24159 AGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || ||||||||||| || || || | || || ||||| Sbjct 2364 TCCGACTACAACATTCAAAAGGAGTCAACCCTCCACTTGGTGTT 2407 >seq76387 Length=1185 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| || |||| || ||| ||| | Sbjct 760 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTGGAGCCCAGC 701 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| ||||| || ||||| || || || || Sbjct 700 GACACCATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAG 641 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || |||||||||||||| || | | | | ||||||| || ||| Sbjct 640 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGTCGCACCCTCAGCGACTACAAC 581 Query 24171 ATTCAAAA 24178 || ||||| Sbjct 580 ATCCAAAA 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429481862633850