Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_008000.1
Length=14531
Score E
Sequences producing significant alignments: (Bits) Value
seq7747 86.0 6e-13
seq270 84.2 2e-12
>seq7747
Length=29887
Score = 86.0 bits (94), Expect = 6e-13
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 10508 CAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATATGTATAGCTA 10567
|||||||||| |||||||||| | || |||||| ||||||||||||||| ||||| ||
Sbjct 5518 CAGCCGTTCTTGAGTTATAAATGGTGTAACTAACACGACTTTGTTTTATATATATAGATA 5577
Query 10568 GATAGATATTTAGATTATGTACAC 10591
||| ||||||| | ||| |||||
Sbjct 5578 TATATATATTTACA-TATATACAC 5600
>seq270
Length=345367
Score = 84.2 bits (92), Expect = 2e-12
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 10498 AATTGGTATACAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATA 10557
||||||| |||||||||| |||||||||||| || |||||| ||||||||||||||
Sbjct 77604 AATTGGTC--CAGCCGTTCTTGAGTTATAAATAGTGTAACTAACACGACTTTGTTTTATA 77547
Query 10558 TGTATAGCTAGATAGATATTTAGAT 10582
| |||| || ||| |||| |||||
Sbjct 77546 TATATATATATATATATATATAGAT 77522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 46334320785740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |