Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008000.1 Length=14531 Score E Sequences producing significant alignments: (Bits) Value seq7747 86.0 6e-13 seq270 84.2 2e-12 >seq7747 Length=29887 Score = 86.0 bits (94), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 10508 CAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATATGTATAGCTA 10567 |||||||||| |||||||||| | || |||||| ||||||||||||||| ||||| || Sbjct 5518 CAGCCGTTCTTGAGTTATAAATGGTGTAACTAACACGACTTTGTTTTATATATATAGATA 5577 Query 10568 GATAGATATTTAGATTATGTACAC 10591 ||| ||||||| | ||| ||||| Sbjct 5578 TATATATATTTACA-TATATACAC 5600 >seq270 Length=345367 Score = 84.2 bits (92), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 10498 AATTGGTATACAGCCGTTCTGAAGTTATAAATAGCGTCCCTAACAAGACTTTGTTTTATA 10557 ||||||| |||||||||| |||||||||||| || |||||| |||||||||||||| Sbjct 77604 AATTGGTC--CAGCCGTTCTTGAGTTATAAATAGTGTAACTAACACGACTTTGTTTTATA 77547 Query 10558 TGTATAGCTAGATAGATATTTAGAT 10582 | |||| || ||| |||| ||||| Sbjct 77546 TATATATATATATATATATATAGAT 77522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46334320785740