Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq32322 87.8 2e-12
seq4881 84.2 3e-11
>seq32322
Length=3942
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/172 (72%), Gaps = 3/172 (2%)
Strand=Plus/Minus
Query 137928 CGACTGCGGCACGTGAATGTTCATCTCGTCGCCGTCAAAGTCGCAGTTGAAGGGCTTCGT 137987
||||||||| | ||| ||||||||||||||||||||||||| |||| || |||
Sbjct 2291 CGACTGCGGAAAGTGGGCGTTCATCTCGTCGCCGTCAAAGTCGGCGTTGTAGCACTTGCA 2232
Query 137988 TATGGCCAGGTTGATTTTGAGCGTCTTGACTGGTTTGATGAC---CACCTTAAAGGCCAT 138044
|||| || | ||| ||||| | || || ||| | ||||| |||||
Sbjct 2231 GTTGGCGTAGTGCAGGCGGAGGGTCTTCTCCCGTGGGAGGACTCGCGCCTTATGCGCCAT 2172
Query 138045 CATGGACGCCTTGTGCAGCGTCGGTTGCCGGTTGAGCAGCACGTAGTCGCCG 138096
||||| | ||||||||||||||| || |||||||| || | | |||||||
Sbjct 2171 TATGGAGGGCTTGTGCAGCGTCGGCTGACGGTTGAGAAGGAGGACGTCGCCG 2120
>seq4881
Length=46776
Score = 84.2 bits (92), Expect = 3e-11
Identities = 144/205 (70%), Gaps = 8/205 (4%)
Strand=Plus/Minus
Query 126179 TGGTGTAAATGTAGCGGGGAGCTGCCGAA-TCCTTGCCTCCCTCCAACCGCGTGCCAAAC 126237
|||| | ||||| |||| |||| || |||||||| |||| || || |||||||||
Sbjct 37187 TGGTAAAGATGTAACGGGC-GCTGGCGGCGTCCTTGCCGCCCTGCAGGCGGGTGCCAAAC 37129
Query 126238 TGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTG 126297
|| || ||| || || | | |||||| || |||||||||||||| | |||
Sbjct 37128 TGGCCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCGACAAAGTCCTGCGCCAGGTTG 37069
Query 126298 ACAATGGTCTCGCACAGGTTC---TGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACG 126354
| |||||| ||| | | ||||||||| | |||| || | |||||| ||||
Sbjct 37068 ATGATGGTC---GACATGAGCGAGACCTCGCCGTGGTGGTAGGCGCTGTGCTCGCCCACC 37012
Query 126355 TAGCCGCTCAGCTGCGCAACCTTGA 126379
||||| ||||||||| |||||||
Sbjct 37011 GAGCCGGCCAGCTGCGCCACCTTGA 36987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610729633192000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |