Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq32322 87.8 2e-12 seq4881 84.2 3e-11 >seq32322 Length=3942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/172 (72%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 137928 CGACTGCGGCACGTGAATGTTCATCTCGTCGCCGTCAAAGTCGCAGTTGAAGGGCTTCGT 137987 ||||||||| | ||| ||||||||||||||||||||||||| |||| || ||| Sbjct 2291 CGACTGCGGAAAGTGGGCGTTCATCTCGTCGCCGTCAAAGTCGGCGTTGTAGCACTTGCA 2232 Query 137988 TATGGCCAGGTTGATTTTGAGCGTCTTGACTGGTTTGATGAC---CACCTTAAAGGCCAT 138044 |||| || | ||| ||||| | || || ||| | ||||| ||||| Sbjct 2231 GTTGGCGTAGTGCAGGCGGAGGGTCTTCTCCCGTGGGAGGACTCGCGCCTTATGCGCCAT 2172 Query 138045 CATGGACGCCTTGTGCAGCGTCGGTTGCCGGTTGAGCAGCACGTAGTCGCCG 138096 ||||| | ||||||||||||||| || |||||||| || | | ||||||| Sbjct 2171 TATGGAGGGCTTGTGCAGCGTCGGCTGACGGTTGAGAAGGAGGACGTCGCCG 2120 >seq4881 Length=46776 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 126179 TGGTGTAAATGTAGCGGGGAGCTGCCGAA-TCCTTGCCTCCCTCCAACCGCGTGCCAAAC 126237 |||| | ||||| |||| |||| || |||||||| |||| || || ||||||||| Sbjct 37187 TGGTAAAGATGTAACGGGC-GCTGGCGGCGTCCTTGCCGCCCTGCAGGCGGGTGCCAAAC 37129 Query 126238 TGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTG 126297 || || ||| || || | | |||||| || |||||||||||||| | ||| Sbjct 37128 TGGCCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCGACAAAGTCCTGCGCCAGGTTG 37069 Query 126298 ACAATGGTCTCGCACAGGTTC---TGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACG 126354 | |||||| ||| | | ||||||||| | |||| || | |||||| |||| Sbjct 37068 ATGATGGTC---GACATGAGCGAGACCTCGCCGTGGTGGTAGGCGCTGTGCTCGCCCACC 37012 Query 126355 TAGCCGCTCAGCTGCGCAACCTTGA 126379 ||||| ||||||||| ||||||| Sbjct 37011 GAGCCGGCCAGCTGCGCCACCTTGA 36987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610729633192000