Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13731 563 1e-155 seq22 260 2e-64 seq32170 93.3 5e-14 seq59797 82.4 1e-10 >seq13731 Length=15303 Score = 563 bits (624), Expect = 1e-155 Identities = 1262/1878 (67%), Gaps = 24/1878 (1%) Strand=Plus/Plus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 |||||||| || ||||| || | | | || ||||| ||||||| ||||||||||| Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 ||||||||||| |||| || || ||||| ||| ||||||||| ||| | || Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 ||||| | ||| || || | ||||| ||||| |||||||| ||||||| ||||| || Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62078 |||||| || || || | |||||||| | |||||| || | |||| ||| | Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCG-AATGT 797 Query 62079 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62135 || | | | || || ||| | || ||||| |||| | ||||| |||| || | Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857 Query 62136 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62195 | ||||||| ||| || ||| || | | | | || | ||| |||| || |||| Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 ||||||| ||||| | ||| | || ||||| || ||| || || ||||| | |||| Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 ||||||| |||| ||||| |||||||| || || ||||||||||| | || | || Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037 Query 62316 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374 | |||| ||| | |||| | ||||| || || | | ||| ||||| || || | Sbjct 1038 TCCTAACACCATGCTGTT-TAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGTG 1096 Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62433 || ||||||||| || || || | | || | ||| |||| Sbjct 1097 GGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGAC-AGCCTTCATA 1155 Query 62434 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62493 || || || | || | |||||||| | ||||||||| || ||||||||||| ||||| Sbjct 1156 AGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAATA 1215 Query 62494 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATT 62553 |||||||||||| | || | ||||| | |||| ||| || | ||||| Sbjct 1216 AATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGCG 1275 Query 62554 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62613 | || |||| |||||||| || ||||| || || || ||||| || | ||||| Sbjct 1276 CATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAAA 1335 Query 62614 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 || || ||| || || || | || || | ||| || || || |||||||| | ||| Sbjct 1336 GTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAATT 1395 Query 62674 TC-TGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT 62728 || || || | | |||| || ||||| || | ||||| | | || | Sbjct 1396 TCGTGTCACAGT--TTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGT 1453 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 | |||||||||||||| || | ||||| | || || || || ||||||| || | Sbjct 1454 GTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCA 1513 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | ||||| | || |||||||| ||||| || || || ||||| || | |||||| ||| Sbjct 1514 GAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGA 1573 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 ||||| ||| | ||||| |||||||| || | || | || ||||| || || | ||| Sbjct 1574 TTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGG 1633 Query 62909 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCTTTT 62966 ||||| || || || ||| | |||| |||| || | | ||| | || || Sbjct 1634 GATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC 1692 Query 62967 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 || |||| || |||||| ||| |||||| || || |||||||| | | | |||| Sbjct 1693 CT-TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAG 1751 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086 |||||| || ||||||||||| ||||||||||||| | | | ||| |||| ||| || | Sbjct 1752 GACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAATA 1811 Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 ||| || ||||| | ||| ||||| |||||||| || || || || ||||| |||| Sbjct 1812 AATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTAT 1871 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 |||| || | ||| | ||| | | |||||| | |||||| ||||||||||| ||||| | Sbjct 1872 TCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCAA 1931 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 | |||||||| ||| || |||||||||| ||| | || |||||| | || | Sbjct 1932 AGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATACCC 1991 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 ||||||||| | | |||||| || || ||||| || || | ||| | || | | Sbjct 1992 GCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTTTG 2051 Query 63327 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384 | || || | | ||| ||| || || || || || || || ||||| || || Sbjct 2052 CTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCACA 2109 Query 63385 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 63444 | | | | | | || || || || |||| | ||| | | ||| ||||| Sbjct 2110 TTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAACA 2169 Query 63445 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 | |||| ||| | | | ||| | ||| ||| | || ||||| || || || || Sbjct 2170 GGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTGAA 2229 Query 63505 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 | ||| ||||| | || || || |||||||| | || ||||| |||||| Sbjct 2230 ATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCATGAAT 2289 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 || | | |||||||||||||||||||| || | |||||| || ||| || | || Sbjct 2290 ACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTCAACTT 2349 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 | || ||||| || | ||||| ||||||||||| ||||| ||| || || || Sbjct 2350 GAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCACGGTC 2409 Query 63685 GTAAATAATAACCGAGTT 63702 || || ||| |||| || Sbjct 2410 ATATATTATAGCCGAATT 2427 >seq22 Length=933496 Score = 260 bits (288), Expect = 2e-64 Identities = 494/715 (69%), Gaps = 19/715 (3%) Strand=Plus/Minus Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||| | |||||| |||||||| ||||| ||| | || |||||||| || || | Sbjct 329805 CAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAA 329746 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 || || || | || |||| | |||||||||||||| || || || | || || Sbjct 329745 ATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT 329686 Query 32609 AG--ATCTTACTGTTTCTTCACTCGGTGGATAC--AATAAA-TGTTTAAACATCAAACAT 32663 || ||| || || ||| ||| | | ||| | |||| ||||||| || Sbjct 329685 TTCAATAATACGGTCCCT--ACT---TGGCTTCTGAATGAGGTGTTGGAACATCAGGCAA 329631 Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723 || |||||||| |||| || ||||| || ||||| || || || || || | || Sbjct 329630 GCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCA 329571 Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 32783 ||||||||||| || || || |||||||| || || ||||| ||| ||||||||| Sbjct 329570 GGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATG 329511 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGTA-TC 32840 ||||| || || ||||| || || | | || ||| | ||| | | || ||| | || Sbjct 329510 CCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATC 329451 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 ||| | |||||||| ||||| || ||| |||||| ||||| |||||||| || Sbjct 329450 CACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAAC 329391 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 32960 | || | ||| || | ||| |||| |||||||||||| || | || |||||||| Sbjct 329390 AAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCA 329331 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 ||||| | || || ||||| ||||||||||| |||||||| | ||||| || || || Sbjct 329330 GAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGA 329271 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 |||||| | || ||||| |||| ||||||||||| || || || ||| ||||| Sbjct 329270 ACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAG 329211 Query 33081 AACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33137 || ||||| || || || |||| || | ||| |||| || ||||||| Sbjct 329210 AATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTC-GGTG--AGACGCGCCCAATCA 329154 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | |||||||| || | || || |||||||| ||||| || ||||| ||||||| Sbjct 329153 TCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099 >seq32170 Length=3971 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 ||||| || || | || || || ||||| || ||||| || || | ||||||||| Sbjct 3343 CCCGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAACCAGCGCTCCGACATCAGATTGTAC 3284 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 |||||||| || | ||| || ||| | ||||| || || ||||| ||||| | ||| Sbjct 3283 GTCTCAATGGCCGCGTCAATGTCCTCGTAGTGAATGCCCACGGCGACGCGCATCAGCATC 3224 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 ||||| || | || || | ||| | || |||| || |||| | | || Sbjct 3223 TGCTGGGGGCGCTCCACCACCTTCCCGCCGATCTTCAGCAGGTAGCTGCGGTAGAGCGTC 3164 Query 63650 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || || ||||| |||||||| |||||| || ||||| || || |||||||||| Sbjct 3163 TTGAAGCCAAAGTAGTTGTAGTGAAAGTCGCGATCGTAGATGATGGCCGAGTTGAG 3108 Score = 89.7 bits (98), Expect = 7e-13 Identities = 262/400 (66%), Gaps = 8/400 (2%) Strand=Plus/Minus Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63078 ||| || || || || | ||| ||||||| |||||| | ||||| ||| || || || Sbjct 3871 CAGGCCGGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTT 3812 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138 ||||||||| || || | ||| | || || || || | || | | ||||| Sbjct 3811 CATAAAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGA 3752 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || || ||||| || ||||| ||| | | || || | ||||||||||| | ||| Sbjct 3751 GCCGGTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTA 3692 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | | || || || ||||| || ||||| || | ||| | |||||||| || Sbjct 3691 GATGGCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTT 3632 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTG--GATGTACCATTGGTCCCTGAGATATAG 63316 || || | || ||| || | | |||||| || | || || || || ||| ||| Sbjct 3631 GTAGACGCGCAGCATCGGCACCAGCCCATTGCTGACG--CCGTTTGTGCCGCTGATGTAG 3574 Query 63317 CTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63374 | || ||| || || | | | ||| | || || || || ||| || |||| Sbjct 3573 GTGCCCGCGGCGCGGATGCAGTGCACGTTG--ACGCCAATGCCGCCGGCCGACTTGGAGA 3516 Query 63375 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 63414 | | ||||| | || | ||| || ||||||||||| || Sbjct 3515 TGATGGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCAAT 3476 >seq59797 Length=1646 Score = 82.4 bits (90), Expect = 1e-10 Identities = 184/273 (67%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || |||||||||||||| || | || || || || || || || || || || Sbjct 1349 TAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAAA 1290 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 |||||||| ||||| || || | | |||||| || | | |||| ||| || || Sbjct 1289 CCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTTC 1230 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 ||||| || || |||||| || || || || || |||||||| | || || | || Sbjct 1229 TCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTTC 1170 Query 33111 TCGT-CTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 || | || || ||| || || ||| || ||||||| || || | |||| |||||| Sbjct 1169 TCATCCTTGT-TTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTC 1111 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33199 | ||||| || || || ||||| || || || Sbjct 1110 TGCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632945538932000