Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq280 141 8e-29
seq322 129 5e-25
seq21746 123 2e-23
seq4530 120 3e-22
>seq280
Length=341618
Score = 141 bits (156), Expect = 8e-29
Identities = 162/215 (75%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||||||| ||||||| | || || ||| ||||
Sbjct 104883 ATGCAGATCTTCGTGAAGACACTGACCGGTAAAACCATCACCTTGGAGGTTGAGCCGTCA 104824
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| | || |||| |||| || || || ||||| ||||| || ||
Sbjct 104823 GACACCATCGAA--AATGTTAAAGCCAAAATCCAG-GATAAGGAAGGTATTCCTCCAGAT 104767
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | ||||||||||| ||||| || ||||| | || ||| || ||| |||
Sbjct 104766 CAACAGCGTTTGATTTTTGCCGGTAAACAGTTGGAAGACGGCCGTACTTTGTCCGACTAC 104707
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || ||||| || || ||||| |||||
Sbjct 104706 AATATTCAGAAGGAATCGACTCTCCATTTGGTGCT 104672
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||| |||| || ||| ||||||| | || || ||| ||||
Sbjct 105111 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCGTCA 105052
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||||||||| || ||||| || |||
Sbjct 105051 GACACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGATCAA 104992
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || |||||||| || | ||||||| || ||| || |||||| ||
Sbjct 104991 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTTTGTCCGATTATAAC 104932
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || || || ||||| || ||
Sbjct 104931 ATCCAAAAGGAGTCTACCCTCCATTTGGTCCT 104900
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| || || ||||| || ||| ||||||| | || || || | ||
Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| |||||||| |||| |||||| || || ||||| || ||||| || |||
Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || |||||||| || | ||||||| ||||| || |||||| ||
Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||| || || || |||||||| ||
Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGTCCT 106040
Score = 125 bits (138), Expect = 6e-24
Identities = 161/219 (74%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| ||||||||| || || ||||||||||| || || ||||||| | || || || |
Sbjct 106711 AAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACC 106652
Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|| || ||||| ||| | || |||| || | ||| |||||||| || ||||||||
Sbjct 106651 ATCCGATACTATTGAG--AATGTAAAAGCCAAGATTCAA-GACAAAGAGGGTATTCCACC 106595
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
|| || || || | || ||||||||||||||||| ||||| | ||||| || |||
Sbjct 106594 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 106535
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| || ||||| || || || || ||| | || ||
Sbjct 106534 TTACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCT 106496
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| || || ||||| || ||| ||||||| | || || || | ||
Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| |||||||| |||| |||||| || || ||||| || ||||| || |||
Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || |||||||| || | ||||||| ||||| || |||||| ||
Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||| || || || |||||||| ||
Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGTCCT 114286
Score = 125 bits (138), Expect = 6e-24
Identities = 161/219 (74%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| ||||||||| || || ||||||||||| || || ||||||| | || || || |
Sbjct 114957 AAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACC 114898
Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|| || ||||| ||| | || |||| || | ||| |||||||| || ||||||||
Sbjct 114897 ATCCGATACTATTGAG--AATGTAAAAGCCAAGATTCAA-GACAAAGAGGGTATTCCACC 114841
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
|| || || || | || ||||||||||||||||| ||||| | ||||| || |||
Sbjct 114840 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 114781
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| || ||||| || || || || ||| | || ||
Sbjct 114780 TTACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCT 114742
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || |||||||| |||||| ||||||| | || || ||| | ||
Sbjct 106479 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCC 106420
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || ||| | || |||| |||| ||| || || ||||| || ||||| ||
Sbjct 106419 GATACCATTGAG--AATGTCAAAGCTAAAATTCAG-GATAAGGAAGGAATCCCACCAGAT 106363
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | ||||| || ||||| || || || |||| ||||| || || |||
Sbjct 106362 CAACAACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTAC 106303
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| || ||||| || | |||||||| | | ||| | |||||
Sbjct 106302 AATATTCAGAAGGAATCTACATTGCATTTAGTTTTGCGCCTACGTGGAGG 106253
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || |||||||| |||||| ||||||| | || || ||| | ||
Sbjct 114725 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCC 114666
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || ||| | || |||| |||| ||| || || ||||| || ||||| ||
Sbjct 114665 GATACCATTGAG--AATGTCAAAGCTAAAATTCAG-GATAAGGAAGGAATCCCACCAGAT 114609
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | ||||| || ||||| || || || |||| ||||| || || |||
Sbjct 114608 CAACAACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTAC 114549
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| || ||||| || | |||||||| | | ||| | |||||
Sbjct 114548 AATATTCAGAAGGAATCTACATTGCATTTAGTTTTGCGCCTACGTGGAGG 114499
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || || ||| | ||||| | || || ||| | ||
Sbjct 106023 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 105964
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| | || |||| || | || || || ||||| ||||| || ||
Sbjct 105963 GACACCATCGAA--AATGTTAAAGCCAAGATCCAA-GATAAGGAAGGTATTCCCCCAGAT 105907
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || ||||||||||| | ||||||| ||||| || || |||
Sbjct 105906 CAGCAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTAC 105847
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| || || || || ||||| || ||
Sbjct 105846 AACATCCAAAAGGAGTCTACTCTGCATTTGGTCCT 105812
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || || ||| | ||||| | || || ||| | ||
Sbjct 114269 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 114210
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| | || |||| || | || || || ||||| ||||| || ||
Sbjct 114209 GACACCATCGAA--AATGTTAAAGCCAAGATCCAA-GATAAGGAAGGTATTCCCCCAGAT 114153
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || ||||||||||| | ||||||| ||||| || || |||
Sbjct 114152 CAGCAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTAC 114093
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| || || || || ||||| || ||
Sbjct 114092 AACATCCAAAAGGAGTCTACTCTGCATTTGGTCCT 114058
>seq322
Length=316913
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || || || | || || | || || ||| | ||
Sbjct 56428 ATGCAAATTTTCGTTAAGACCCTAACGGGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 56369
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| | ||| | |||| ||| ||||| |||||||| || || || ||
Sbjct 56368 GATACAATTGAGCATGTTAAGGCGAAAATTCAA-GACAAGGAAGGGATCCCTCCAGATCA 56310
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | ||||| || || || ||||||||||||| || || | | |||||||||
Sbjct 56309 ACAGCGCCTAATTTTCGCAGGAAAGCAATTAGAAGATGGGCGAACCTTAGCCGATTACAA 56250
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||| ||||| || |||||||||| || |||| || |||||
Sbjct 56249 TATTCAAAAGGAATCTACTTTACATTTAGTACTTCGGCTCAGGGGAGG 56202
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || | || | || || | || || ||| | ||
Sbjct 38533 ATGCAAATTTTCGTTAAGACCCTAACGCGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 38592
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| ||||| |||||| ||| ||||| | |||||| || || || ||
Sbjct 38593 GATACAATTGAGCATGTGAAGGCAAAAATTCAA-GACAAGGGAGGGATCCCCCCAGATCA 38651
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | ||||| || || ||||||| ||||||| || || | | || ||||||
Sbjct 38652 ACAGCGCCTAATTTTCGCAGGAAAACAATAGGAAGATGGGCGAACCTTAGCCGGTTACAA 38711
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||| ||||| || |||||||||| || |||| || |||||
Sbjct 38712 TATTCAAAAGGAATCTACTTTACATTTAGTACTTCGGCTCAGGGGAGG 38759
>seq21746
Length=7614
Score = 123 bits (136), Expect = 2e-23
Identities = 154/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || || | || || || ||||||| | || || ||| | ||
Sbjct 2195 AATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAGCCTTC 2254
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||||||| | ||| |||||| || |||||||| || ||||| || ||
Sbjct 2255 TGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCAGATCA 2314
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | ||||| |||||||| ||||| ||||||| ||| ||| || ||| |||||
Sbjct 2315 ACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGACTACAA 2374
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|||||||| || || || || || || |||
Sbjct 2375 CATTCAAAAGGAGTCAACCCTCCACTTGGTG 2405
>seq4530
Length=49833
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || | || | || || | || || ||| | ||
Sbjct 18307 ATGCAAATTTTCGTTAAGACCCTAACGCGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 18366
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| ||||| |||||| ||| ||||| | |||||| || || || ||
Sbjct 18367 GATACAATTGAGCATGTGAAGGCAAAAATTCAA-GACAAGGGAGGGATCCCCCCAGATCA 18425
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | ||||| || || ||||||| ||||||| || || | | || ||||||
Sbjct 18426 ACAGCGCCTAATTTTCGCAGGAAAACAATAGGAAGATGGGCGAACCTTAGCCGGTTACAA 18485
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||| ||||| || |||||||||| || |||| || |||||
Sbjct 18486 TATTCAAAAGGAATCTACTTTACATTTAGTACTTCGGCTCAGGGGAGG 18533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432870279696050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |