Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq280 141 8e-29 seq322 129 5e-25 seq21746 123 2e-23 seq4530 120 3e-22 >seq280 Length=341618 Score = 141 bits (156), Expect = 8e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || || ||| |||| Sbjct 104883 ATGCAGATCTTCGTGAAGACACTGACCGGTAAAACCATCACCTTGGAGGTTGAGCCGTCA 104824 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || |||| |||| || || || ||||| ||||| || || Sbjct 104823 GACACCATCGAA--AATGTTAAAGCCAAAATCCAG-GATAAGGAAGGTATTCCTCCAGAT 104767 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||||||||| ||||| || ||||| | || ||| || ||| ||| Sbjct 104766 CAACAGCGTTTGATTTTTGCCGGTAAACAGTTGGAAGACGGCCGTACTTTGTCCGACTAC 104707 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| || || ||||| ||||| Sbjct 104706 AATATTCAGAAGGAATCGACTCTCCATTTGGTGCT 104672 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| |||| || ||| ||||||| | || || ||| |||| Sbjct 105111 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCGTCA 105052 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||||||||| || ||||| || ||| Sbjct 105051 GACACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGATCAA 104992 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| || ||| || |||||| || Sbjct 104991 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTTTGTCCGATTATAAC 104932 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || ||||| || || Sbjct 104931 ATCCAAAAGGAGTCTACCCTCCATTTGGTCCT 104900 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || ||||| || ||| ||||||| | || || || | || Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||||| |||| |||||| || || ||||| || ||||| || ||| Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| ||||| || |||||| || Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || |||||||| || Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGTCCT 106040 Score = 125 bits (138), Expect = 6e-24 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || || ||||||||||| || || ||||||| | || || || | Sbjct 106711 AAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACC 106652 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || ||||| ||| | || |||| || | ||| |||||||| || |||||||| Sbjct 106651 ATCCGATACTATTGAG--AATGTAAAAGCCAAGATTCAA-GACAAAGAGGGTATTCCACC 106595 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || || | || ||||||||||||||||| ||||| | ||||| || ||| Sbjct 106594 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 106535 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||||| || || || || ||| | || || Sbjct 106534 TTACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCT 106496 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || ||||| || ||| ||||||| | || || || | || Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||||| |||| |||||| || || ||||| || ||||| || ||| Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| ||||| || |||||| || Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || |||||||| || Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGTCCT 114286 Score = 125 bits (138), Expect = 6e-24 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || || ||||||||||| || || ||||||| | || || || | Sbjct 114957 AAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACC 114898 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || ||||| ||| | || |||| || | ||| |||||||| || |||||||| Sbjct 114897 ATCCGATACTATTGAG--AATGTAAAAGCCAAGATTCAA-GACAAAGAGGGTATTCCACC 114841 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || || | || ||||||||||||||||| ||||| | ||||| || ||| Sbjct 114840 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 114781 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||||| || || || || ||| | || || Sbjct 114780 TTACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCT 114742 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| |||||| ||||||| | || || ||| | || Sbjct 106479 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCC 106420 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| ||| || || ||||| || ||||| || Sbjct 106419 GATACCATTGAG--AATGTCAAAGCTAAAATTCAG-GATAAGGAAGGAATCCCACCAGAT 106363 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || ||||| || || || |||| ||||| || || ||| Sbjct 106362 CAACAACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTAC 106303 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || ||||| || | |||||||| | | ||| | ||||| Sbjct 106302 AATATTCAGAAGGAATCTACATTGCATTTAGTTTTGCGCCTACGTGGAGG 106253 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| |||||| ||||||| | || || ||| | || Sbjct 114725 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCC 114666 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| ||| || || ||||| || ||||| || Sbjct 114665 GATACCATTGAG--AATGTCAAAGCTAAAATTCAG-GATAAGGAAGGAATCCCACCAGAT 114609 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || ||||| || || || |||| ||||| || || ||| Sbjct 114608 CAACAACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTAC 114549 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || ||||| || | |||||||| | | ||| | ||||| Sbjct 114548 AATATTCAGAAGGAATCTACATTGCATTTAGTTTTGCGCCTACGTGGAGG 114499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| | ||||| | || || ||| | || Sbjct 106023 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 105964 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || |||| || | || || || ||||| ||||| || || Sbjct 105963 GACACCATCGAA--AATGTTAAAGCCAAGATCCAA-GATAAGGAAGGTATTCCCCCAGAT 105907 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||||||||| | ||||||| ||||| || || ||| Sbjct 105906 CAGCAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTAC 105847 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || ||||| || || Sbjct 105846 AACATCCAAAAGGAGTCTACTCTGCATTTGGTCCT 105812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| | ||||| | || || ||| | || Sbjct 114269 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 114210 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || |||| || | || || || ||||| ||||| || || Sbjct 114209 GACACCATCGAA--AATGTTAAAGCCAAGATCCAA-GATAAGGAAGGTATTCCCCCAGAT 114153 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||||||||| | ||||||| ||||| || || ||| Sbjct 114152 CAGCAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTAC 114093 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || ||||| || || Sbjct 114092 AACATCCAAAAGGAGTCTACTCTGCATTTGGTCCT 114058 >seq322 Length=316913 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || | || || | || || ||| | || Sbjct 56428 ATGCAAATTTTCGTTAAGACCCTAACGGGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 56369 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | |||| ||| ||||| |||||||| || || || || Sbjct 56368 GATACAATTGAGCATGTTAAGGCGAAAATTCAA-GACAAGGAAGGGATCCCTCCAGATCA 56310 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || || || ||||||||||||| || || | | ||||||||| Sbjct 56309 ACAGCGCCTAATTTTCGCAGGAAAGCAATTAGAAGATGGGCGAACCTTAGCCGATTACAA 56250 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| ||||| || |||||||||| || |||| || ||||| Sbjct 56249 TATTCAAAAGGAATCTACTTTACATTTAGTACTTCGGCTCAGGGGAGG 56202 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || | || | || || | || || ||| | || Sbjct 38533 ATGCAAATTTTCGTTAAGACCCTAACGCGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 38592 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| |||||| ||| ||||| | |||||| || || || || Sbjct 38593 GATACAATTGAGCATGTGAAGGCAAAAATTCAA-GACAAGGGAGGGATCCCCCCAGATCA 38651 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || || ||||||| ||||||| || || | | || |||||| Sbjct 38652 ACAGCGCCTAATTTTCGCAGGAAAACAATAGGAAGATGGGCGAACCTTAGCCGGTTACAA 38711 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| ||||| || |||||||||| || |||| || ||||| Sbjct 38712 TATTCAAAAGGAATCTACTTTACATTTAGTACTTCGGCTCAGGGGAGG 38759 >seq21746 Length=7614 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | || || || ||||||| | || || ||| | || Sbjct 2195 AATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAGCCTTC 2254 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| | ||| |||||| || |||||||| || ||||| || || Sbjct 2255 TGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCAGATCA 2314 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| |||||||| ||||| ||||||| ||| ||| || ||| ||||| Sbjct 2315 ACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGACTACAA 2374 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||||| || || || || || || ||| Sbjct 2375 CATTCAAAAGGAGTCAACCCTCCACTTGGTG 2405 >seq4530 Length=49833 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || | || | || || | || || ||| | || Sbjct 18307 ATGCAAATTTTCGTTAAGACCCTAACGCGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 18366 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| |||||| ||| ||||| | |||||| || || || || Sbjct 18367 GATACAATTGAGCATGTGAAGGCAAAAATTCAA-GACAAGGGAGGGATCCCCCCAGATCA 18425 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || || ||||||| ||||||| || || | | || |||||| Sbjct 18426 ACAGCGCCTAATTTTCGCAGGAAAACAATAGGAAGATGGGCGAACCTTAGCCGGTTACAA 18485 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| ||||| || |||||||||| || |||| || ||||| Sbjct 18486 TATTCAAAAGGAATCTACTTTACATTTAGTACTTCGGCTCAGGGGAGG 18533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432870279696050