Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_008348.1
Length=168041
Score E
Sequences producing significant alignments: (Bits) Value
seq22380 84.2 2e-11
seq8352 82.4 8e-11
>seq22380
Length=7273
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/132 (76%), Gaps = 8/132 (6%)
Strand=Plus/Minus
Query 127556 GTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAACACTTCAATCCC 127615
|| |||||||| ||||||| | ||||| ||||| ||| | || | |||||||| |||
Sbjct 6708 GTTCACGAGTTTGGCGACAACACCAACGGCTGCACCTCGTCTGGTGCTCACTTCAA-CCC 6650
Query 127616 ACCGGTATGGA-TCACGGAGCGCCCA---ACGCGCTCGTTCGTCACGTTGGCGACCTGGG 127671
|| || || |||||| | |||| ||| | | ||||||||||||||||||||
Sbjct 6649 ACAGGGCAAGACTCACGGCGGCCCCACTGACGAG---GAGCGTCACGTTGGCGACCTGGG 6593
Query 127672 CAACGTGGAGGC 127683
||||||||||||
Sbjct 6592 CAACGTGGAGGC 6581
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/132 (76%), Gaps = 8/132 (6%)
Strand=Plus/Minus
Query 127556 GTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAACACTTCAATCCC 127615
|| |||||||| ||||||| | ||||| ||||| ||| | || | |||||||| |||
Sbjct 6937 GTTCACGAGTTTGGCGACAACACCAACGGCTGCACCTCGTCTGGTGCTCACTTCAA-CCC 6879
Query 127616 ACCGGTATGGA-TCACGGAGCGCCCA---ACGCGCTCGTTCGTCACGTTGGCGACCTGGG 127671
|| || || |||||| | |||| ||| | | ||||||||||||||||||||
Sbjct 6878 ACAGGGCAAGACTCACGGCGGCCCCACTGACGAG---GAGCGTCACGTTGGCGACCTGGG 6822
Query 127672 CAACGTGGAGGC 127683
||||||||||||
Sbjct 6821 CAACGTGGAGGC 6810
>seq8352
Length=27642
Score = 82.4 bits (90), Expect = 8e-11
Identities = 123/170 (72%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 127525 CGGTCTGCCGCGAGGTTTGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGG 127584
||| ||| ||| || |||||| || ||||| ||| ||||||||||||| ||| ||||
Sbjct 21164 CGGCCTGACGCCGGGCAAGCACGGTTTTCACGTCCACCAGTTCGGCGACACCTCGGACGG 21223
Query 127585 TTGCACGTCGGC--GGGGGAACACTTCAATCCCACCGGTATGGATCACGGAGCGCCC-AA 127641
||||| | || ||| |||| ||| ||| |||| ||||| |||||| |
Sbjct 21224 CTGCAC--CAGCATGGGCCCGCACTACAACCCCGCCGGACACAGCCACGGGGCGCCCGGA 21281
Query 127642 CGCGCTCGTTCGTCACGTTGGCGACCTGGGCAACGTGGAGGCGGCTAGCA 127691
||| || || ||||| ||||||||||||||| | ||||||| ||||
Sbjct 21282 GACGC-CGCCCGACACGTCGGCGACCTGGGCAACATCGAGGCGGACAGCA 21330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537020774133200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |