Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq22380 84.2 2e-11 seq8352 82.4 8e-11 >seq22380 Length=7273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/132 (76%), Gaps = 8/132 (6%) Strand=Plus/Minus Query 127556 GTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAACACTTCAATCCC 127615 || |||||||| ||||||| | ||||| ||||| ||| | || | |||||||| ||| Sbjct 6708 GTTCACGAGTTTGGCGACAACACCAACGGCTGCACCTCGTCTGGTGCTCACTTCAA-CCC 6650 Query 127616 ACCGGTATGGA-TCACGGAGCGCCCA---ACGCGCTCGTTCGTCACGTTGGCGACCTGGG 127671 || || || |||||| | |||| ||| | | |||||||||||||||||||| Sbjct 6649 ACAGGGCAAGACTCACGGCGGCCCCACTGACGAG---GAGCGTCACGTTGGCGACCTGGG 6593 Query 127672 CAACGTGGAGGC 127683 |||||||||||| Sbjct 6592 CAACGTGGAGGC 6581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/132 (76%), Gaps = 8/132 (6%) Strand=Plus/Minus Query 127556 GTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAACACTTCAATCCC 127615 || |||||||| ||||||| | ||||| ||||| ||| | || | |||||||| ||| Sbjct 6937 GTTCACGAGTTTGGCGACAACACCAACGGCTGCACCTCGTCTGGTGCTCACTTCAA-CCC 6879 Query 127616 ACCGGTATGGA-TCACGGAGCGCCCA---ACGCGCTCGTTCGTCACGTTGGCGACCTGGG 127671 || || || |||||| | |||| ||| | | |||||||||||||||||||| Sbjct 6878 ACAGGGCAAGACTCACGGCGGCCCCACTGACGAG---GAGCGTCACGTTGGCGACCTGGG 6822 Query 127672 CAACGTGGAGGC 127683 |||||||||||| Sbjct 6821 CAACGTGGAGGC 6810 >seq8352 Length=27642 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 127525 CGGTCTGCCGCGAGGTTTGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGG 127584 ||| ||| ||| || |||||| || ||||| ||| ||||||||||||| ||| |||| Sbjct 21164 CGGCCTGACGCCGGGCAAGCACGGTTTTCACGTCCACCAGTTCGGCGACACCTCGGACGG 21223 Query 127585 TTGCACGTCGGC--GGGGGAACACTTCAATCCCACCGGTATGGATCACGGAGCGCCC-AA 127641 ||||| | || ||| |||| ||| ||| |||| ||||| |||||| | Sbjct 21224 CTGCAC--CAGCATGGGCCCGCACTACAACCCCGCCGGACACAGCCACGGGGCGCCCGGA 21281 Query 127642 CGCGCTCGTTCGTCACGTTGGCGACCTGGGCAACGTGGAGGCGGCTAGCA 127691 ||| || || ||||| ||||||||||||||| | ||||||| |||| Sbjct 21282 GACGC-CGCCCGACACGTCGGCGACCTGGGCAACATCGAGGCGGACAGCA 21330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537020774133200