Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq22 304 1e-77 seq59797 143 3e-29 seq80133 127 2e-24 seq73849 127 2e-24 seq8687 127 2e-24 seq51670 123 3e-23 seq93 123 3e-23 seq17816 116 4e-21 seq20575 87.8 2e-12 >seq22 Length=933496 Score = 304 bits (336), Expect = 1e-77 Identities = 506/725 (70%), Gaps = 16/725 (2%) Strand=Plus/Minus Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 || |||| || || | ||| || |||||||| || || | |||||| | | ||||| Sbjct 329817 CAGCTCGACCAGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATT 329758 Query 92968 CATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC 93027 ||| || | | | ||||||| || || || ||||| |||| || ||| ||| || Sbjct 329757 CATGCCAATCAAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGC 329698 Query 93028 TTCTTTCAAGATTTCTAT--TACTCTAC-TATTTGGTGGTTTTTGTACGACATAATTGTA 93084 ||| | |||||| || ||| | | || |||| || || | || | | | | Sbjct 329697 TTCAGCAATGATTTCAATAATACGGTCCCTACTTGGC---TTCTGAATGAGGTGTTGGAA 329641 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 ||| | ||| ||||| ||| |||||| |||||||| | ||| || | |||||| ||| Sbjct 329640 CATCAGGCAAGCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAA 329581 Query 93145 TGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGa 93204 ||| ||||| || | || || |||||||| |||||||| |||||||||||||| ||| Sbjct 329580 TGTCAAACCAGGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACT 329521 Query 93205 aaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT 93264 ||| || || ||||| || || |||||||| | ||||||||| |||| || || || || Sbjct 329520 AAAGAAAATGCCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTT 329461 Query 93265 ACTGCTG--ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 | || ||||| | |||||||| || || ||||| | ||| | || || Sbjct 329460 --CGATGAAATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCA 329403 Query 93323 ATAGCGTTAAATAGGTAATC---TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| || || | |||||| | ||| | | ||| || |||||||| ||||| Sbjct 329402 ATAGCATTGAACAAGTAATCCCTTTGCTTGCC---ATCCTTAATATATGTATCAATTAAT 329346 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | |||||||||||||| ||||||||||| || ||||| ||||| ||||| || | Sbjct 329345 ATGCTGTACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGC 329286 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 || || ||||| || |||||||| || | || || | |||||||| || |||||| Sbjct 329285 GCCTCTGTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCA 329226 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||||| || ||||| || ||||| | ||| || ||||| |||| || | || Sbjct 329225 TCGGAGGCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGA 329166 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||||| | |||||| ||||| || || ||||| || ||||| || |||||| Sbjct 329165 CGCGCCCAATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCT 329106 Query 93620 TCTGC 93624 ||||| Sbjct 329105 TCTGC 329101 >seq59797 Length=1646 Score = 143 bits (158), Expect = 3e-29 Identities = 197/275 (72%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || || || || || | || || || | ||||||||| ||| ||| Sbjct 1352 ATGTAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGG 1293 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||||||||| ||||| | || ||| || || || ||||| || | || Sbjct 1292 AAACCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGG 1233 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| ||||| || ||||| || || || || |||| ||| | || || || Sbjct 1232 TTCTCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGC 1173 Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 |||||||| | || | | || | ||| || | | ||| || || | || | |||| Sbjct 1172 TTCTCATCCTTGTTTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCT 1113 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 || ||||||| || || ||||||||||| ||||| Sbjct 1112 TCTGCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078 Score = 114 bits (126), Expect = 1e-20 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| ||||| || || ||||| |||||| ||||| || | || |||| |||||| Sbjct 1646 TCGTCACGTGAAATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTG 1587 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || || ||||| |||||| || || |||||||| ||||| |||||||| Sbjct 1586 AGCCAGAAAATGGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCT 1527 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACT----GCTGATCCATTTTAAAGCCCAATC 93291 || | | || |||| ||| || || ||||||| || | ||||| || Sbjct 1526 ACTAGTCTCTCACCAAATGATGC----TTTCTCGTCATTGATCCACTTAACTGCCCAGTC 1471 Query 93292 GGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCG 93345 ||||| |||||| || || | ||||| |||||||| || | |||||| || Sbjct 1470 AGCTTTGCGCTTAATGCATGGAATAGTTTCAATAGCGTTGAACAAGTAATCACG 1417 >seq80133 Length=1114 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 872 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 931 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 932 GTGGGTTCGAACCCCACACCTGACAAA 958 >seq73849 Length=1237 Score = 127 bits (140), Expect = 2e-24 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 672 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 613 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||||| Sbjct 612 AGCGTGGGTTCGAACCCCACACCTGACAA 584 >seq8687 Length=26405 Score = 127 bits (140), Expect = 2e-24 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 16237 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 16178 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||||| Sbjct 16177 AGCGTGGGTTCGAACCCCACACCTGACAA 16149 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 14726 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 14667 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 14666 GTGGGTTCGAACCCCACACCTGACAA 14641 >seq51670 Length=1991 Score = 123 bits (136), Expect = 3e-23 Identities = 80/87 (92%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 || ||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 671 ACGGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGA 730 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||||| Sbjct 731 GCGTGGGTTCGAACCCCACACCTGACA 757 >seq93 Length=564405 Score = 123 bits (136), Expect = 3e-23 Identities = 80/87 (92%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 || ||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 13755 ACGGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGA 13696 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||||| Sbjct 13695 GCGTGGGTTCGAACCCCACACCTGACA 13669 >seq17816 Length=10514 Score = 116 bits (128), Expect = 4e-21 Identities = 81/91 (89%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 5188 AGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 5129 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||||||||||||| |||||| | ||| Sbjct 5128 GTGGGTTCGAACCCCACATCTGACACAGTAT 5098 >seq20575 Length=8356 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 ||||||| | ||||||||||||| |||||| |||| |||||||||| | | || | | Sbjct 7280 ACAGTCATGATGGCCGAGTGGTCCAAGGCGTCAGACTTAAGATCTGATCCTCTGATGAGG 7339 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| | ||||| Sbjct 7340 GCGTGGGTTCGAACCCCACTCATGACA 7366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556257510930800