Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq4881 100 6e-16
seq1736 96.9 7e-15
seq1658 96.9 7e-15
seq731 96.9 7e-15
seq38461 95.1 2e-14
seq989 95.1 2e-14
seq602 95.1 2e-14
seq8974 93.3 9e-14
seq1 93.3 9e-14
seq501 91.5 3e-13
seq28231 89.7 1e-12
seq6386 89.7 1e-12
seq570 89.7 1e-12
seq1824 86.0 1e-11
seq257 86.0 1e-11
seq1178 84.2 4e-11
>seq4881
Length=46776
Score = 100 bits (110), Expect = 6e-16
Identities = 404/624 (65%), Gaps = 28/624 (4%)
Strand=Plus/Plus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATG-ATGTGGAGCGTTCTATTCC 218576
||||| || |||||||||| ||||| || | || ||| | ||||| || |||||
Sbjct 36851 GACTTTGTCAACAAGGAGCTGATTCTCTT-TAGCAACATGGACAATGAGCGCTCCATTCC 36909
Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636
||||||| || |||||||| ||||| ||| | |||||| || ||||||||
Sbjct 36910 GTCGCTGGTGGACGGGCTCAAGCCGGGCCAGCGCAAGGTGCTCTTTACCTGCTTCAAGCG 36969
Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696
||| | || | ||||| || ||| | | || | || ||| |
Sbjct 36970 CAACGACAAGCGCGAGGTCAAGGTGGCGCAGCTGGCCGGCTCGGTGGGCGAGCACAGCGC 37029
Query 218697 CTACCATCACGGTGAGCAGAGTCTG---CAGGGTG-CCATTGTAGGCATGGCACAGGACT 218752
|||||| ||||| ||| |||| || | | |||| | | |||| |||||||
Sbjct 37030 CTACCACCACGGCGAG----GTCTCGCTCATGTCGACCATCATCAACCTGGCGCAGGACT 37085
Query 218753 ATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTAT 218812
||| ||||| |||||||| ||| ||||| | |||| || |||||||| | || ||
Sbjct 37086 TTGTCGGCAGCAACAACATTAACCTGCTGATGCCCATTGGCCAGTTTGGCACCCGCCTGC 37145
Query 218813 TGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTT--GTC-GCCCGTGA 218869
||| || ||||| || ||| | || |||||||| | | | ||| || ||
Sbjct 37146 AGGGCGGCAAGGACGCCGCCAGCGCCCGTTACATCTTTACCATGCTCAGTCCGCTCG--- 37202
Query 218870 CGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTT 218929
| || || |||| | |||| ||||| ||| || || || || | ||||||
Sbjct 37203 CCCGGAAGCTGTTTAGTCAGCTGGATGAGCCGCTGCTAAACTACCT---GTACGATGACA 37259
Query 218930 -CTTC--GATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTG 218986
| || |||||||||||||| |||||||| ||||| | |||| || || || |
Sbjct 37260 ACCTCAAGATTGAGCCCGAGTACTATGTGCCCATCATTCCCATGGTGCTGGTCAACGGCG 37319
Query 218987 CCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCA 219046
|| | || || || || |||| || || | ||||| |||||||| ||||||
Sbjct 37320 CCGAGGGCATTGGCACCGGGTGGAGCACCAAGATTCCCAACTACAATCCACGGGACATTG 37379
Query 219047 TTGACAACGTCAAGCGTCTCATATCTGGCAAGGAG---ATGGTACCGATGTCTCCGTGGT 219103
| |||||| | ||| | || ||| ||||| | ||| |||| || ||||
Sbjct 37380 TCGACAACATTCGGCGGATGATGCGCGGCGAGGAGGTCAAGGT---GATGAAGCCCTGGT 37436
Query 219104 ACAAGGAGTTTACTGGGTCTATTG 219127
||||| ||||| || || ||||
Sbjct 37437 TCAAGGGCTTTACCGGCTCCATTG 37460
>seq1736
Length=109086
Score = 96.9 bits (106), Expect = 7e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 12906 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 12965
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| |||||
Sbjct 12966 CCCACGTTGGGCGGAAGT 12983
>seq1658
Length=113207
Score = 96.9 bits (106), Expect = 7e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 106182 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 106123
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| |||||
Sbjct 106122 CCCACGTTGGGCGGAAGT 106105
>seq731
Length=200492
Score = 96.9 bits (106), Expect = 7e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 116068 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 116009
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| |||||
Sbjct 116008 CCCACGTTGGGCGGAAGT 115991
Score = 89.7 bits (98), Expect = 1e-12
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 108144 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATTTCAGGGTCGTGGGTTCGA 108203
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 108204 GCCCCACGTTGGGC 108217
>seq38461
Length=3019
Score = 95.1 bits (104), Expect = 2e-14
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2443 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2384
Query 142563 CCCCACATCGGGCAGAAGTC 142582
|||||| | |||| |||||
Sbjct 2383 CCCCACGTTGGGCGCAAGTC 2364
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 856 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 797
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 796 CCCACGTTGGGC 785
>seq989
Length=166514
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 87453 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 87394
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 87393 AGCCCCACGTTGGGC 87379
Score = 93.3 bits (102), Expect = 9e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 161935 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 161876
Query 142563 CCCCACATCGGGCAGAAGT 142581
|||||| | |||| ||||
Sbjct 161875 CCCCACGTTGGGCGCAAGT 161857
>seq602
Length=222404
Score = 95.1 bits (104), Expect = 2e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558
|||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 7520 AGATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 7579
Query 142559 CGAGCCCCACATCGGGC 142575
|||||||||| | ||||
Sbjct 7580 CGAGCCCCACGTTGGGC 7596
Score = 95.1 bits (104), Expect = 2e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558
|||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 8561 AGATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 8620
Query 142559 CGAGCCCCACATCGGGC 142575
|||||||||| | ||||
Sbjct 8621 CGAGCCCCACGTTGGGC 8637
>seq8974
Length=25430
Score = 93.3 bits (102), Expect = 9e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 11374 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 11315
Query 142563 CCCCACATCGGGCAGAAGT 142581
|||||| | |||| ||||
Sbjct 11314 CCCCACGTTGGGCGCAAGT 11296
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 9847 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9788
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 9787 CCCACGTTGGGC 9776
>seq1
Length=2471670
Score = 93.3 bits (102), Expect = 9e-14
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112
||| || ||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 1950481 GTCCCTTTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 1950540
Query 142113 CCCGCCAGAGA 142123
||||| || ||
Sbjct 1950541 CCCGCAAGGGA 1950551
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1950228 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 1950287
Query 142112 CCCCGCCAGAGA 142123
|||||| || ||
Sbjct 1950288 CCCCGCAAGGGA 1950299
>seq501
Length=246106
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 219721 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 219662
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 219661 CCCCACGTTGGGC 219649
>seq28231
Length=4947
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 4331 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4390
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 4391 CCCACGTTGGGC 4402
>seq6386
Length=36377
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 31260 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 31319
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 31320 CCCACGTTGGGC 31331
>seq570
Length=230617
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 207638 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 207697
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 207698 CCCACGTTGGGC 207709
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 214561 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 214620
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 214621 CCCACGTTGGGC 214632
>seq1824
Length=104847
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct 41831 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 41890
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 41891 CCCACGTTGGGC 41902
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct 41914 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 41973
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 41974 CCCACGTTGGGC 41985
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct 41997 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 42056
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 42057 CCCACGTTGGGC 42068
>seq257
Length=353820
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 109333 GCCCGGCTAGCTCAGTCGGGAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 109274
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 109273 CCCACGTTGGGC 109262
>seq1178
Length=149873
Score = 84.2 bits (92), Expect = 4e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 142499 AGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557
||||| |||||| |||||||||||||||||| ||||||||||||| | |||| |||
Sbjct 48909 AGATATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGTTCGTAGGT 48850
Query 142558 TCGAGCCCCACATCGGGC 142575
||||||||||| | ||||
Sbjct 48849 TCGAGCCCCACGTTGGGC 48832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1026695428989470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |