Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4881 100 6e-16 seq1736 96.9 7e-15 seq1658 96.9 7e-15 seq731 96.9 7e-15 seq38461 95.1 2e-14 seq989 95.1 2e-14 seq602 95.1 2e-14 seq8974 93.3 9e-14 seq1 93.3 9e-14 seq501 91.5 3e-13 seq28231 89.7 1e-12 seq6386 89.7 1e-12 seq570 89.7 1e-12 seq1824 86.0 1e-11 seq257 86.0 1e-11 seq1178 84.2 4e-11 >seq4881 Length=46776 Score = 100 bits (110), Expect = 6e-16 Identities = 404/624 (65%), Gaps = 28/624 (4%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATG-ATGTGGAGCGTTCTATTCC 218576 ||||| || |||||||||| ||||| || | || ||| | ||||| || ||||| Sbjct 36851 GACTTTGTCAACAAGGAGCTGATTCTCTT-TAGCAACATGGACAATGAGCGCTCCATTCC 36909 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 ||||||| || |||||||| ||||| ||| | |||||| || |||||||| Sbjct 36910 GTCGCTGGTGGACGGGCTCAAGCCGGGCCAGCGCAAGGTGCTCTTTACCTGCTTCAAGCG 36969 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||| | || | ||||| || ||| | | || | || ||| | Sbjct 36970 CAACGACAAGCGCGAGGTCAAGGTGGCGCAGCTGGCCGGCTCGGTGGGCGAGCACAGCGC 37029 Query 218697 CTACCATCACGGTGAGCAGAGTCTG---CAGGGTG-CCATTGTAGGCATGGCACAGGACT 218752 |||||| ||||| ||| |||| || | | |||| | | |||| ||||||| Sbjct 37030 CTACCACCACGGCGAG----GTCTCGCTCATGTCGACCATCATCAACCTGGCGCAGGACT 37085 Query 218753 ATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTAT 218812 ||| ||||| |||||||| ||| ||||| | |||| || |||||||| | || || Sbjct 37086 TTGTCGGCAGCAACAACATTAACCTGCTGATGCCCATTGGCCAGTTTGGCACCCGCCTGC 37145 Query 218813 TGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTT--GTC-GCCCGTGA 218869 ||| || ||||| || ||| | || |||||||| | | | ||| || || Sbjct 37146 AGGGCGGCAAGGACGCCGCCAGCGCCCGTTACATCTTTACCATGCTCAGTCCGCTCG--- 37202 Query 218870 CGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTT 218929 | || || |||| | |||| ||||| ||| || || || || | |||||| Sbjct 37203 CCCGGAAGCTGTTTAGTCAGCTGGATGAGCCGCTGCTAAACTACCT---GTACGATGACA 37259 Query 218930 -CTTC--GATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTG 218986 | || |||||||||||||| |||||||| ||||| | |||| || || || | Sbjct 37260 ACCTCAAGATTGAGCCCGAGTACTATGTGCCCATCATTCCCATGGTGCTGGTCAACGGCG 37319 Query 218987 CCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCA 219046 || | || || || || |||| || || | ||||| |||||||| |||||| Sbjct 37320 CCGAGGGCATTGGCACCGGGTGGAGCACCAAGATTCCCAACTACAATCCACGGGACATTG 37379 Query 219047 TTGACAACGTCAAGCGTCTCATATCTGGCAAGGAG---ATGGTACCGATGTCTCCGTGGT 219103 | |||||| | ||| | || ||| ||||| | ||| |||| || |||| Sbjct 37380 TCGACAACATTCGGCGGATGATGCGCGGCGAGGAGGTCAAGGT---GATGAAGCCCTGGT 37436 Query 219104 ACAAGGAGTTTACTGGGTCTATTG 219127 ||||| ||||| || || |||| Sbjct 37437 TCAAGGGCTTTACCGGCTCCATTG 37460 >seq1736 Length=109086 Score = 96.9 bits (106), Expect = 7e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 12906 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 12965 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| ||||| Sbjct 12966 CCCACGTTGGGCGGAAGT 12983 >seq1658 Length=113207 Score = 96.9 bits (106), Expect = 7e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 106182 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 106123 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| ||||| Sbjct 106122 CCCACGTTGGGCGGAAGT 106105 >seq731 Length=200492 Score = 96.9 bits (106), Expect = 7e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 116068 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 116009 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| ||||| Sbjct 116008 CCCACGTTGGGCGGAAGT 115991 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||| | |||||||||||||| Sbjct 108144 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATTTCAGGGTCGTGGGTTCGA 108203 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 108204 GCCCCACGTTGGGC 108217 >seq38461 Length=3019 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2443 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2384 Query 142563 CCCCACATCGGGCAGAAGTC 142582 |||||| | |||| ||||| Sbjct 2383 CCCCACGTTGGGCGCAAGTC 2364 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 856 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 797 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 796 CCCACGTTGGGC 785 >seq989 Length=166514 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 87453 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 87394 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 87393 AGCCCCACGTTGGGC 87379 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 161935 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 161876 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| | |||| |||| Sbjct 161875 CCCCACGTTGGGCGCAAGT 161857 >seq602 Length=222404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 7520 AGATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 7579 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||||| | |||| Sbjct 7580 CGAGCCCCACGTTGGGC 7596 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 8561 AGATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 8620 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||||| | |||| Sbjct 8621 CGAGCCCCACGTTGGGC 8637 >seq8974 Length=25430 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 11374 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 11315 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| | |||| |||| Sbjct 11314 CCCCACGTTGGGCGCAAGT 11296 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 9847 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9788 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 9787 CCCACGTTGGGC 9776 >seq1 Length=2471670 Score = 93.3 bits (102), Expect = 9e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| |||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 1950481 GTCCCTTTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 1950540 Query 142113 CCCGCCAGAGA 142123 ||||| || || Sbjct 1950541 CCCGCAAGGGA 1950551 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 1950228 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 1950287 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 1950288 CCCCGCAAGGGA 1950299 >seq501 Length=246106 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 219721 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 219662 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 219661 CCCCACGTTGGGC 219649 >seq28231 Length=4947 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4331 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4390 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4391 CCCACGTTGGGC 4402 >seq6386 Length=36377 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 31260 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 31319 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 31320 CCCACGTTGGGC 31331 >seq570 Length=230617 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 207638 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 207697 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 207698 CCCACGTTGGGC 207709 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 214561 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 214620 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 214621 CCCACGTTGGGC 214632 >seq1824 Length=104847 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 41831 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 41890 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 41891 CCCACGTTGGGC 41902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 41914 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 41973 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 41974 CCCACGTTGGGC 41985 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 41997 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 42056 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 42057 CCCACGTTGGGC 42068 >seq257 Length=353820 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||| Sbjct 109333 GCCCGGCTAGCTCAGTCGGGAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 109274 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 109273 CCCACGTTGGGC 109262 >seq1178 Length=149873 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142499 AGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 ||||| |||||| |||||||||||||||||| ||||||||||||| | |||| ||| Sbjct 48909 AGATATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGTTCGTAGGT 48850 Query 142558 TCGAGCCCCACATCGGGC 142575 ||||||||||| | |||| Sbjct 48849 TCGAGCCCCACGTTGGGC 48832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026695428989470