Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq280 84.2 2e-11 seq886 82.4 5e-11 seq322 82.4 5e-11 >seq280 Length=341618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG-C 21892 ||||| || || | || ||| | || || |||||||| ||| |||| || |||| | Sbjct 104883 ATGCAGATCTTCGTGAAGACACTGACCGGTAAAACCATCACCTTGGAGGTTGA-GCCGTC 104825 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| ||||| ||||| || ||| | ||| | | || Sbjct 104824 AGACACCATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAAGGTATTCCTCCAGATCA 104765 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | | || ||||| || ||||| | ||||| ||| || |||| ||||| Sbjct 104764 ACAGCGTTTGATTTTTGCCGGTAAACAGTTGGAAGACGGCCGTACTTTGTCCGACTACAA 104705 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||| ||||| ||| |||| | ||| | || ||||| Sbjct 104704 TATTCAGAAGGAATCGACTCTCCATTTGGTGCTTCGTCTTCGCGGAGG 104657 >seq886 Length=177178 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 20083 CACGGGTTCCATGTCCACGAATACGGCGACATGAGCAACGGCTGCACGTCGGCCGGCGAG 20142 || || |||||||| ||||||| || || | | ||| |||||||| ||||| || Sbjct 132136 CATGGCTTCCATGTGCACGAATTTGGAGATAACACCAATGGCTGCACATCGGCTGGTCCC 132077 Query 20143 CATTTTAATCCCACCGACGAAGACCATGGCGCTCCCGATGCCGAAATTAGGCATGTCGGT 20202 ||||| ||||| | | | |||| ||||||||||| | ||||| | | ||| | ||| Sbjct 132076 CATTTCAATCCAGCTGGCAAAGAGCATGGCGCTCCAACCGACGAAAATCGTCATTTAGGT 132017 Query 20203 GATTTAGGCAACATAAAGTCGGCTGGTTAT 20232 ||||| || ||||| || | ||||| || Sbjct 132016 GATTTGGGTAACATTGAGGCCCCTGGTAAT 131987 >seq322 Length=316913 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || |||||||||| || ||||| | || || | | Sbjct 56428 ATGCAAATTTTCGTTAAGACCCTAACGGGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 56369 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| || || || || | ||| | | ||| Sbjct 56368 GATACAATTGAGCATGTTAAGGCGAAAATTCAAGACAAGGAAGGGATCCCTCCAGATCAA 56309 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || || || || || || ||| |||||||| ||| | |||||||||||| Sbjct 56308 CAGCGCCTAATTTTCGCAGGAAAGCAATTAGAAGATGGGCGAACCTTAGCCGATTACAAT 56249 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| |||||||||||| | ||| | ||| Sbjct 56248 ATTCAAAAGGAATCTACTTTACATTTAGTA 56219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357746516131180