Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_008953.1
Length=3935
Score E
Sequences producing significant alignments: (Bits) Value
seq45828 113 1e-21
seq11632 89.7 1e-14
seq32073 86.0 2e-13
seq10665 80.6 7e-12
seq1170 80.6 7e-12
seq34533 77.0 8e-11
>seq45828
Length=2350
Score = 113 bits (124), Expect = 1e-21
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426
|| || || ||| |||||| | || ||| | || | || |||| | |||||||||
Sbjct 1825 TGCACCTTCCACCGATACGGAGCCTCCGGCGACGTGCAGAAGCACGACGCCCTCTGCATC 1766
Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486
|||||| |||| | |||||||||||||||||||| |||||||||||||||||| | |
Sbjct 1765 CTCCCGCTGAACATCGTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTCGTCTTC 1706
Query 3487 CTAGCCATCATCAGCGG 3503
|| |||||||||| |||
Sbjct 1705 CTCGCCATCATCACCGG 1689
>seq11632
Length=18754
Score = 89.7 bits (98), Expect = 1e-14
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391
||||||||| || ||||| || || || || || || ||||| ||||| || |
Sbjct 15029 ACCCCATGATGCAGGTCTTCCCCCGCATGACCAAGTGCACCTTCCACAACTACGGCCCCT 15088
Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451
||||| | || | || ||||| | ||||| ||||| | ||| | ||||||||||
Sbjct 15089 CGGGCGACATGCAGAAGTACGACGCCATCTGCGTCCTCTCCATCAACATCGTCAACGAGA 15148
Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTCTAC 3483
|| |||| | |||||||||||||||||||||
Sbjct 15149 AGGGCTACCTCTTCCTCTGGTTCTGGTTCTAC 15180
>seq32073
Length=3989
Score = 86.0 bits (94), Expect = 2e-13
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 3421 TGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480
||| |||| |||| |||| | ||| ||||||| ||||| | || |||||||||||||||
Sbjct 1773 TGCCTCCTTCCGGTGAACATTCTCAGCGAGAAGGTCTACCTCTTTCTCTGGTTCTGGTTC 1714
Query 3481 TACGTGCTAGCCATCATCAGCGGTATCGTTGTTCTGTACCGC 3522
|| |||| ||| || ||||| || | || |||| ||||||
Sbjct 1713 CACCTGCTCGCCCTCCTCAGCAGTCTGGTCCTTCTCTACCGC 1672
>seq10665
Length=20746
Score = 80.6 bits (88), Expect = 7e-12
Identities = 106/147 (72%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393
|| ||| ||| |||||||| | | |||| ||| || || |||||||||||||| ||
Sbjct 15976 CCGATGGCGCGTGTCTTTCCGAAAGTCACCAAATGCACATTCCACAAATACGGTCCATCT 16035
Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453
|| || || |||| | ||| || ||||| | | || ||| | || || |||||
Sbjct 16036 GGTTCGGTGCAAAAGTTCGACGGTCTCTGTGTGTTGCCATTGAATATTGTGAATGAGAAA 16095
Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480
|||||| | ||||| ||||| ||||||
Sbjct 16096 ATCTACGTATTCCTGTGGTTTTGGTTC 16122
>seq1170
Length=150246
Score = 80.6 bits (88), Expect = 7e-12
Identities = 106/147 (72%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393
|| ||| ||| |||||||| | | |||| ||| || || |||||||||||||| ||
Sbjct 71728 CCGATGGCGCGTGTCTTTCCGAAAGTCACCAAATGCACATTCCACAAATACGGTCCATCT 71669
Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453
|| || || |||| | ||| || ||||| | | || ||| | || || |||||
Sbjct 71668 GGTTCGGTGCAAAAGTTCGACGGTCTCTGTGTGTTGCCATTGAATATTGTGAATGAGAAA 71609
Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480
||||| | ||||| ||||||||||||
Sbjct 71608 ATCTATGTATTCCTGTGGTTCTGGTTC 71582
>seq34533
Length=3558
Score = 77.0 bits (84), Expect = 8e-11
Identities = 62/75 (83%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 3421 TGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480
||||| || ||| ||| | |||||||||||| | ||||| ||||||||||||||||||
Sbjct 346 TGCATTCTGCCGATCAACATCGTCAACGAGAAGGTGTACATCTTCCTCTGGTTCTGGTTC 287
Query 3481 TACGTGCTAGCCATC 3495
||| | || ||||||
Sbjct 286 TACTTCCTCGCCATC 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 12468169545000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |