Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq45828 113 1e-21 seq11632 89.7 1e-14 seq32073 86.0 2e-13 seq10665 80.6 7e-12 seq1170 80.6 7e-12 seq34533 77.0 8e-11 >seq45828 Length=2350 Score = 113 bits (124), Expect = 1e-21 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||| |||||| | || ||| | || | || |||| | ||||||||| Sbjct 1825 TGCACCTTCCACCGATACGGAGCCTCCGGCGACGTGCAGAAGCACGACGCCCTCTGCATC 1766 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 |||||| |||| | |||||||||||||||||||| |||||||||||||||||| | | Sbjct 1765 CTCCCGCTGAACATCGTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTCGTCTTC 1706 Query 3487 CTAGCCATCATCAGCGG 3503 || |||||||||| ||| Sbjct 1705 CTCGCCATCATCACCGG 1689 >seq11632 Length=18754 Score = 89.7 bits (98), Expect = 1e-14 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 ||||||||| || ||||| || || || || || || ||||| ||||| || | Sbjct 15029 ACCCCATGATGCAGGTCTTCCCCCGCATGACCAAGTGCACCTTCCACAACTACGGCCCCT 15088 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 ||||| | || | || ||||| | ||||| ||||| | ||| | |||||||||| Sbjct 15089 CGGGCGACATGCAGAAGTACGACGCCATCTGCGTCCTCTCCATCAACATCGTCAACGAGA 15148 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTCTAC 3483 || |||| | ||||||||||||||||||||| Sbjct 15149 AGGGCTACCTCTTCCTCTGGTTCTGGTTCTAC 15180 >seq32073 Length=3989 Score = 86.0 bits (94), Expect = 2e-13 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 3421 TGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 ||| |||| |||| |||| | ||| ||||||| ||||| | || ||||||||||||||| Sbjct 1773 TGCCTCCTTCCGGTGAACATTCTCAGCGAGAAGGTCTACCTCTTTCTCTGGTTCTGGTTC 1714 Query 3481 TACGTGCTAGCCATCATCAGCGGTATCGTTGTTCTGTACCGC 3522 || |||| ||| || ||||| || | || |||| |||||| Sbjct 1713 CACCTGCTCGCCCTCCTCAGCAGTCTGGTCCTTCTCTACCGC 1672 >seq10665 Length=20746 Score = 80.6 bits (88), Expect = 7e-12 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 || ||| ||| |||||||| | | |||| ||| || || |||||||||||||| || Sbjct 15976 CCGATGGCGCGTGTCTTTCCGAAAGTCACCAAATGCACATTCCACAAATACGGTCCATCT 16035 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 || || || |||| | ||| || ||||| | | || ||| | || || ||||| Sbjct 16036 GGTTCGGTGCAAAAGTTCGACGGTCTCTGTGTGTTGCCATTGAATATTGTGAATGAGAAA 16095 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| | ||||| ||||| |||||| Sbjct 16096 ATCTACGTATTCCTGTGGTTTTGGTTC 16122 >seq1170 Length=150246 Score = 80.6 bits (88), Expect = 7e-12 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 || ||| ||| |||||||| | | |||| ||| || || |||||||||||||| || Sbjct 71728 CCGATGGCGCGTGTCTTTCCGAAAGTCACCAAATGCACATTCCACAAATACGGTCCATCT 71669 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 || || || |||| | ||| || ||||| | | || ||| | || || ||||| Sbjct 71668 GGTTCGGTGCAAAAGTTCGACGGTCTCTGTGTGTTGCCATTGAATATTGTGAATGAGAAA 71609 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 ||||| | ||||| |||||||||||| Sbjct 71608 ATCTATGTATTCCTGTGGTTCTGGTTC 71582 >seq34533 Length=3558 Score = 77.0 bits (84), Expect = 8e-11 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 3421 TGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 ||||| || ||| ||| | |||||||||||| | ||||| |||||||||||||||||| Sbjct 346 TGCATTCTGCCGATCAACATCGTCAACGAGAAGGTGTACATCTTCCTCTGGTTCTGGTTC 287 Query 3481 TACGTGCTAGCCATC 3495 ||| | || |||||| Sbjct 286 TACTTCCTCGCCATC 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12468169545000