Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq280 122 7e-23 seq76387 118 9e-22 seq21746 109 5e-19 seq28390 84.2 2e-11 >seq280 Length=341618 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || ||||| | ||||| || ||||| ||||| |||||| Sbjct 104882 ATACCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCG 104941 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| || || || || ||| |||| | ||||||||| || || Sbjct 104942 GACAAAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGT 105001 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | || | |||||| | | || Sbjct 105002 GGGATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCA 105061 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| |||||||| || || ||||| ||||| Sbjct 105062 ACCTCCAAGGTGATGGTTTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | |||||||||||| | |||||||| || ||||| ||||| || Sbjct 106250 ATACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA 106309 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || | || || |||||| | || | ||| ||||| || || Sbjct 106310 GACAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGT 106369 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| || ||| | | |||| ||| |||| | || Sbjct 106370 GGGATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCA 106429 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| || |||| |||||| || |||||||||||| Sbjct 106430 ACCTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 106480 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | |||||||||||| | |||||||| || ||||| ||||| || Sbjct 114496 ATACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA 114555 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || | || || |||||| | || | ||| ||||| || || Sbjct 114556 GACAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGT 114615 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| || ||| | | |||| ||| |||| | || Sbjct 114616 GGGATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCA 114675 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| || |||| |||||| || |||||||||||| Sbjct 114676 ACCTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 114726 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || ||||| | ||||| || ||||| |||||||| || Sbjct 105110 ATACCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCC 105169 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||||||||| ||| | || | ||| ||||| || ||| Sbjct 105170 GACAAGGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGA 105229 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||||||||| || |||||| || | | ||| | |||||| | | || Sbjct 105230 GGAATGCCTTCTTTATCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCA 105289 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || || || || || || ||||| Sbjct 105290 ACCTCCAAGGTGATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| | ||| | ||||| || ||||| |||||||||||| Sbjct 106478 ATGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG 106537 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | |||||| || || |||| | ||| || || || || Sbjct 106538 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGT 106597 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| |||||| ||||| | |||| || |||| | ||| Sbjct 106598 GGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCA 106657 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| ||| || || || || ||||| Sbjct 106658 ACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 106707 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| | ||| | ||||| || ||||| |||||||||||| Sbjct 114724 ATGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG 114783 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | |||||| || || |||| | ||| || || || || Sbjct 114784 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGT 114843 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| |||||| ||||| | |||| || |||| | ||| Sbjct 114844 GGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCA 114903 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| ||| || || || || ||||| Sbjct 114904 ACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 114953 >seq76387 Length=1185 Score = 118 bits (130), Expect = 9e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 ||||| |||||||| ||||| | || ||| || || ||||| || |||||| ||||| Sbjct 573 TTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGATG 632 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 |||||||| |||||||| |||||||| || ||||| ||||| || | | ||| Sbjct 633 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCA 692 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||||||| ||| || || || | || | ||| |||||||| || || || || || Sbjct 693 ATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAG 752 Query 114375 ATCTGCAT 114382 |||||||| Sbjct 753 ATCTGCAT 760 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | || ||| || || || || || ||| Sbjct 792 GTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCGTCCTCGAGCTGCTTTCCA 851 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 852 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 911 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| ||| ||| || || || | ||| | || |||||||| || || Sbjct 912 ACATTCTCGATGGTATCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 971 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 972 TTCACAAAGATCTGCATGCCT 992 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 ||||| |||||||| ||||||| ||| ||| || || || || || |||||| ||||| Sbjct 1094 TTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATG 1153 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 || ||||| ||||||||||| ||||| || || Sbjct 1154 AGTCGCTGCTGGTCCGGAGGGATGCCCTCCTT 1185 >seq21746 Length=7614 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || || || | || || || |||||||||||||| ||| Sbjct 2425 ATACCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCG 2366 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||||| |||||| | ||| || || ||| | || | ||| ||||| || || Sbjct 2365 GACAAAGTACGACCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGT 2306 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || || || || | | ||| | ||||| | | ||| Sbjct 2305 GGTATACCTTCTTTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCG 2246 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || ||||| || ||||||||||| Sbjct 2245 ACCTCCAAAGTGATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCAT 2196 >seq28390 Length=4902 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||| | || || || | || || || || || || ||||| || Sbjct 535 ACCACCACGGAGTCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGA 476 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || || || || |||||||| ||| ||||||||||||| ||||| ||||| Sbjct 475 AAGGGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGG 416 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| |||||| || | | || | || || | || ||||| Sbjct 415 GATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCAGAGGGCTCGAC 356 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | || ||||| || || || || ||||| || |||||| Sbjct 355 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATTTGCATG 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419690615972040