Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq40302 378 1e-99
seq32170 188 1e-42
seq53698 107 4e-18
seq59797 104 4e-17
>seq40302
Length=2817
Score = 378 bits (418), Expect = 1e-99
Identities = 529/731 (72%), Gaps = 16/731 (2%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|||||||||||||||||| |||||||| |||||||||||||| || | |||||
Sbjct 2665 CTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAATGAGAACCTCGCGGAGCGCTTCATC 2606
Query 42483 AAAGAGGTG-CAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|||||| | || | ||||| || |||||||||||||||||||| ||||| |||||
Sbjct 2605 CGCGAGGTGACCGT-CACCGAGGCCCGTTGCTTCTACGGCTTCCAGATTGCCATCGAGAA 2547
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
||| ||||| ||| ||||| || ||| ||||||| |||||| || | |||| ||||
Sbjct 2546 CGTCCACTCGGAGATGTACTCCCTGCTGATCAACACCTACATCAGCGACCGCGTCCAGCG 2487
Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661
| || ||||| ||||| |||||||||||||| || |||||||||| | |||||
Sbjct 2486 CGAGTACCTCTTCAACGCCATCCAGACGATGCCCTGCGTCGCGAAGAAGGCGAAGTGGGC 2427
Query 42662 GCTCAACTGGATCGAGAGTC----CCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717
| ||||| || | | || ||| || || | |||| | || || |||||
Sbjct 2426 CATGGCCTGGA-CGGCCGCCGAAAACGGCGCCACCTTTGCCGAGCGCCTCGTCGCCTTCG 2368
Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777
||||||| ||||||||||||||| ||| |||| ||| |||||| ||||| ||| ||
Sbjct 2367 CCGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTTTGCCAGCATCTTTTGGCTGAAGAAGC 2308
Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837
| |||||| || || |||||| || || || |||||| | |||||||| ||||
Sbjct 2307 GCGGCCTGATGCCGGGCCTGACCTTCAGCAATGAGCTGATCAGCCGCGACGAGGGCCTGC 2248
Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897
| | ||||||||||| ||||| || || ||||||| | | ||||| | | ||||
Sbjct 2247 ACTGCGACTTTGCCTGTCTCCTCTT-TC--GCCACCTGATTAAGAAGCCGTACGATGAGC 2191
Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957
|||| | ||||||| |||||||| |||||| ||||||||||||| | | |
Sbjct 2190 GGGTGGTGCAGATCATCAACGAGGCCGTCCGCATCGAGCAGGAGTTCCTCACTGACGCCC 2131
Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017
| || || |||| | ||||||||| |||| || |||| || |||||| ||||| ||
Sbjct 2130 TTCCGGTCGCCCTCATTGGCATGAACAACGAGCTGATGTCCACGTACATTGAGTACTGCG 2071
Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCC--GTGCCCCT 43074
|||||| || ||| || | || | ||| | ||| || ||| | | ||||
Sbjct 2070 CCGACCGGCTGCTGGTGGAGCTCGGCGT--GCC-CAAGTACTACAACGTCAAGAATCCCT 2014
Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134
| ||||| |||||| | ||| ||||||| |||||||| || || |||||||||||||
Sbjct 2013 TTGACTTCATGGAGCAGATCAGCCTGGAGGGAAAGACCAATTTCTTTGAGAAGCGCGTCG 1954
Query 43135 CCGACTACCAG 43145
||| ||||||
Sbjct 1953 GCGAGTACCAG 1943
>seq32170
Length=3971
Score = 188 bits (208), Expect = 1e-42
Identities = 344/501 (69%), Gaps = 12/501 (2%)
Strand=Plus/Minus
Query 244897 CTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC 244956
||| |||||||| |||||| |||| || | ||||||| || | |||||
Sbjct 3925 CTCCGCCTCGTACTTCTCGTACAGCTCCTCAAAGGCCTCGCCCCAGCAGTCCTGCAGGCC 3866
Query 244957 GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016
||||||| ||||||||| || ||| ||||| | ||| ||| | || ||| ||
Sbjct 3865 GGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATAAA 3806
Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGT 245076
|||||| || | ||| | ||| | ||||||||| | || | |||| |||||||| ||
Sbjct 3805 GAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCGGT 3746
Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136
|||||| | ||| || | ||| || |||| |||| ||||||| || || | ||||| ||
Sbjct 3745 GTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATGGC 3686
Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGA 245192
| || || || |||||||| || |||||||||| | | || ||| ||||
Sbjct 3685 AAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCA----CGTAGCGGGCGGTGTTGTTGT 3630
Query 245193 AGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGC 245252
||| |||||| | ||||| | || || | |||||| ||||| ||||||||| ||
Sbjct 3629 AGACGCGCAGCATCGGCACCAGCCCATTGCTGACGCCGTTTGTGCCGCTGATGTAGGTGC 3570
Query 245253 CCTTGCCCCTGAGG--TTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310
|| | | | || | ||| | ||| ||| | |||||||| |||||||||||
Sbjct 3569 CCGCGGCGCGGATGCAGTGCACGTTGAC--GCCAATGCCGCCGGCCGACTTGGAGATGAT 3512
Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370
|||||| ||| | ||||| |||||||| || |||| | | |||||
Sbjct 3511 GGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCAATCGAGTCCTCGGAGAGCGTCAGCAG 3452
Query 245371 AAAGCAGGAGGACAGCTGGGG 245391
|||||||||||||||||| ||
Sbjct 3451 AAAGCAGGAGGACAGCTGCGG 3431
>seq53698
Length=1888
Score = 107 bits (118), Expect = 4e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156
||||||||||| || || ||||| || ||| ||||| ||| | || |||||| |||
Sbjct 1720 ACCTGAAACTCGCCGGAGAGCACCCGTCGCGAGTAGATGTTATTCGTGTACGGCTCAATG 1779
Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216
||| ||||||| || ||||||||||| || || ||||| |||| || |||||||
Sbjct 1780 GACTCATTGTTGCCGAGAATCTGCGCCGTCGAGGCGGTGGGCATCGGCGCCAGCAGCAGA 1839
Query 244217 CTGTTCCTCACGCCGTGCC 244235
||||| | |||||||||||
Sbjct 1840 CTGTTGCGCACGCCGTGCC 1858
>seq59797
Length=1646
Score = 104 bits (114), Expect = 4e-17
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669
||||||| || || || || || || ||||| ||| || || |||||||| | || |
Sbjct 1427 TGTTCAACGCTATTGAAACTATTCCATGCATTAAGCGCAAAGCTGACTGGGCAGTTAAGT 1486
Query 42670 GGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728
||||| | | | || ||| | || || ||||| || ||||| ||| | ||||| ||
Sbjct 1487 GGATCAAT-GACGAGAAAGCATCATTTGGTGAGAGACTAGTAGCATTTGCTGCCGTAGAA 1545
Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787
|| || |||||||| || | || || ||||| |||||||||||| ||| |||| | |||
Sbjct 1546 GGTATTTTCTTCTCTGGTTCATTTGCATCCATTTTCTGGCTCAAGAAGAGAGGT-TTGAT 1604
Query 42788 GCCCGGACTCACCTTCTCGAACGAA 42812
||| || | || ||||| || |||
Sbjct 1605 GCCTGGTTTGACATTCTCTAATGAA 1629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943316126519200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |