Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq40302 378 1e-99 seq32170 188 1e-42 seq53698 107 4e-18 seq59797 104 4e-17 >seq40302 Length=2817 Score = 378 bits (418), Expect = 1e-99 Identities = 529/731 (72%), Gaps = 16/731 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||||||||||||| |||||||| |||||||||||||| || | ||||| Sbjct 2665 CTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAATGAGAACCTCGCGGAGCGCTTCATC 2606 Query 42483 AAAGAGGTG-CAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||| | || | ||||| || |||||||||||||||||||| ||||| ||||| Sbjct 2605 CGCGAGGTGACCGT-CACCGAGGCCCGTTGCTTCTACGGCTTCCAGATTGCCATCGAGAA 2547 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 ||| ||||| ||| ||||| || ||| ||||||| |||||| || | |||| |||| Sbjct 2546 CGTCCACTCGGAGATGTACTCCCTGCTGATCAACACCTACATCAGCGACCGCGTCCAGCG 2487 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | || ||||| ||||| |||||||||||||| || |||||||||| | ||||| Sbjct 2486 CGAGTACCTCTTCAACGCCATCCAGACGATGCCCTGCGTCGCGAAGAAGGCGAAGTGGGC 2427 Query 42662 GCTCAACTGGATCGAGAGTC----CCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 | ||||| || | | || ||| || || | |||| | || || ||||| Sbjct 2426 CATGGCCTGGA-CGGCCGCCGAAAACGGCGCCACCTTTGCCGAGCGCCTCGTCGCCTTCG 2368 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 ||||||| ||||||||||||||| ||| |||| ||| |||||| ||||| ||| || Sbjct 2367 CCGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTTTGCCAGCATCTTTTGGCTGAAGAAGC 2308 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | |||||| || || |||||| || || || |||||| | |||||||| |||| Sbjct 2307 GCGGCCTGATGCCGGGCCTGACCTTCAGCAATGAGCTGATCAGCCGCGACGAGGGCCTGC 2248 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | ||||||||||| ||||| || || ||||||| | | ||||| | | |||| Sbjct 2247 ACTGCGACTTTGCCTGTCTCCTCTT-TC--GCCACCTGATTAAGAAGCCGTACGATGAGC 2191 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 |||| | ||||||| |||||||| |||||| ||||||||||||| | | | Sbjct 2190 GGGTGGTGCAGATCATCAACGAGGCCGTCCGCATCGAGCAGGAGTTCCTCACTGACGCCC 2131 Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 | || || |||| | ||||||||| |||| || |||| || |||||| ||||| || Sbjct 2130 TTCCGGTCGCCCTCATTGGCATGAACAACGAGCTGATGTCCACGTACATTGAGTACTGCG 2071 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCC--GTGCCCCT 43074 |||||| || ||| || | || | ||| | ||| || ||| | | |||| Sbjct 2070 CCGACCGGCTGCTGGTGGAGCTCGGCGT--GCC-CAAGTACTACAACGTCAAGAATCCCT 2014 Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134 | ||||| |||||| | ||| ||||||| |||||||| || || ||||||||||||| Sbjct 2013 TTGACTTCATGGAGCAGATCAGCCTGGAGGGAAAGACCAATTTCTTTGAGAAGCGCGTCG 1954 Query 43135 CCGACTACCAG 43145 ||| |||||| Sbjct 1953 GCGAGTACCAG 1943 >seq32170 Length=3971 Score = 188 bits (208), Expect = 1e-42 Identities = 344/501 (69%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 244897 CTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC 244956 ||| |||||||| |||||| |||| || | ||||||| || | ||||| Sbjct 3925 CTCCGCCTCGTACTTCTCGTACAGCTCCTCAAAGGCCTCGCCCCAGCAGTCCTGCAGGCC 3866 Query 244957 GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016 ||||||| ||||||||| || ||| ||||| | ||| ||| | || ||| || Sbjct 3865 GGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATAAA 3806 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGT 245076 |||||| || | ||| | ||| | ||||||||| | || | |||| |||||||| || Sbjct 3805 GAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCGGT 3746 Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 |||||| | ||| || | ||| || |||| |||| ||||||| || || | ||||| || Sbjct 3745 GTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATGGC 3686 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGA 245192 | || || || |||||||| || |||||||||| | | || ||| |||| Sbjct 3685 AAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCA----CGTAGCGGGCGGTGTTGTTGT 3630 Query 245193 AGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGC 245252 ||| |||||| | ||||| | || || | |||||| ||||| ||||||||| || Sbjct 3629 AGACGCGCAGCATCGGCACCAGCCCATTGCTGACGCCGTTTGTGCCGCTGATGTAGGTGC 3570 Query 245253 CCTTGCCCCTGAGG--TTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 || | | | || | ||| | ||| ||| | |||||||| ||||||||||| Sbjct 3569 CCGCGGCGCGGATGCAGTGCACGTTGAC--GCCAATGCCGCCGGCCGACTTGGAGATGAT 3512 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 |||||| ||| | ||||| |||||||| || |||| | | ||||| Sbjct 3511 GGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCAATCGAGTCCTCGGAGAGCGTCAGCAG 3452 Query 245371 AAAGCAGGAGGACAGCTGGGG 245391 |||||||||||||||||| || Sbjct 3451 AAAGCAGGAGGACAGCTGCGG 3431 >seq53698 Length=1888 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||| || || ||||| || ||| ||||| ||| | || |||||| ||| Sbjct 1720 ACCTGAAACTCGCCGGAGAGCACCCGTCGCGAGTAGATGTTATTCGTGTACGGCTCAATG 1779 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| ||||||| || ||||||||||| || || ||||| |||| || ||||||| Sbjct 1780 GACTCATTGTTGCCGAGAATCTGCGCCGTCGAGGCGGTGGGCATCGGCGCCAGCAGCAGA 1839 Query 244217 CTGTTCCTCACGCCGTGCC 244235 ||||| | ||||||||||| Sbjct 1840 CTGTTGCGCACGCCGTGCC 1858 >seq59797 Length=1646 Score = 104 bits (114), Expect = 4e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||||| || || || || || || ||||| ||| || || |||||||| | || | Sbjct 1427 TGTTCAACGCTATTGAAACTATTCCATGCATTAAGCGCAAAGCTGACTGGGCAGTTAAGT 1486 Query 42670 GGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||| | | | || ||| | || || ||||| || ||||| ||| | ||||| || Sbjct 1487 GGATCAAT-GACGAGAAAGCATCATTTGGTGAGAGACTAGTAGCATTTGCTGCCGTAGAA 1545 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787 || || |||||||| || | || || ||||| |||||||||||| ||| |||| | ||| Sbjct 1546 GGTATTTTCTTCTCTGGTTCATTTGCATCCATTTTCTGGCTCAAGAAGAGAGGT-TTGAT 1604 Query 42788 GCCCGGACTCACCTTCTCGAACGAA 42812 ||| || | || ||||| || ||| Sbjct 1605 GCCTGGTTTGACATTCTCTAATGAA 1629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943316126519200