Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq52999 394 2e-105 >seq52999 Length=1923 Score = 394 bits (436), Expect = 2e-105 Identities = 722/1050 (69%), Gaps = 31/1050 (3%) Strand=Plus/Plus Query 2929 GAAGGAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGA 2988 ||||||| ||||||| || ||||| |||||||||||||||||| | || || ||| Sbjct 122 GAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGA 181 Query 2989 GCGGCTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAA 3048 ||| | || || | |||| | | | | || || ||| |||||||||| ||||| Sbjct 182 GCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGACCTGAATCCGAA 241 Query 3049 GATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCCC--GTAACGAAA----TCAG 3102 | | | |||||| |||||| ||| ||||| | || ||| |||| Sbjct 242 CGTGGAGAACCGCAACAAGGGCCCG------CGTAAGCCCCCGGAAAAGAACCTGTTCAG 295 Query 3103 CGACGAACAGC---ACAAGC-GCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATC 3158 |||||||||| | |||| ||| || | |||| || ||| |||||| ||| | Sbjct 296 CGACGAACAGATTGAGAAGCTGCAG----GAGGTTTTCCACGGCTCGATGTTCGGCTACC 351 Query 3159 AGAAAGTCTGGTATCGGAACGGCGATCAGCGCACG---CGCAACATCCTGAAATCGCGGC 3215 || |||| | ||| || || | | |||||| | ||||| ||||| | Sbjct 352 AGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCC 411 Query 3216 AGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACCGACC 3275 |||| || || || | | || || ||||||||||| |||| ||||| ||||| | Sbjct 412 AGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGC 471 Query 3276 GCAATCAGATCTTCCTATCGGCCAGCAAGGCGCAGGCGCACGTCTTCAAGCAATACATCA 3335 |||||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||||| Sbjct 472 GCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCA 531 Query 3336 CGCAGTTCGCGCGCGATGCCGCCGACGTCGAGCTCACGGGCGACCCGATCATCTTGCCGA 3395 | || || ||||| | | |||| || || | |||||||||||| | | | Sbjct 532 TTGAATTTGCCCGCGAGGTGG---ACGTAGACCTGAAGGGCGACCCGATGACGCTCAGTA 588 Query 3396 GCGGTGCGACGCTGTACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCA 3455 ||||||| ||||| |||||||| || ||||| || ||||||||| |||||||||| Sbjct 589 ACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGGCA 648 Query 3456 ACTTCTATTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGT 3515 | | || | || ||||| || ||| | |||||||| | || || | || || |||| Sbjct 649 ATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGT 708 Query 3516 CGGGCATGGCGATGCACAAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCA 3575 | ||||||||| |||||||| |||||| | |||||||| ||| ||||| || ||| Sbjct 709 CCGGCATGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCA 768 Query 3576 CGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG 3635 ||||| || | |||||||| ||| |||| ||| ||||| ||| | | Sbjct 769 CGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGCTG 828 Query 3636 AGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACG 3695 | || | | || ||| ||||| || | || | ||| | ||||| |||| Sbjct 829 ACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACG 888 Query 3696 CGCAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCG 3755 |||| || |||||||| ||||| || ||| || |||||||| ||||||| | Sbjct 889 GCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTG 948 Query 3756 ACATCGACGAGCTGCGC-CGCGAATACAGCGCCGAGGAATTCGCGAACCTGCTGATGTGC 3814 || | || |||||||| |||| |||||| | ||||| | | |||||||||||||||| Sbjct 949 ACCTGGAGCAGCTGCGCACGCG-CTACAGCCCGGAGGATTACCAGAACCTGCTGATGTGC 1007 Query 3815 CACTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTC 3874 ||| || |||||| | |||||| ||| ||||| | ||||| |||||||| Sbjct 1008 GTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATGCATGGTG 1067 Query 3875 GACTCGTGGGAGGAATGGGCGGACGACTTTTCGCCGCTGCTGCTGCGTCCGTTCGGTCAT 3934 ||| ||||| | ||| | ||||||| | ||||| |||||| |||||||| Sbjct 1068 GACAGCTGGGAAGTCTGGAC---CGACTTTGAGGCGCTGGCGCTGCGCCCGTTCGGCTGG 1124 Query 3935 CGCGAGGTGTGGGTCGGCTACGATCCGGCG 3964 || |||||| |||||||||| || ||| Sbjct 1125 AAAGAAGTGTGGATCGGCTACGACCCCGCG 1154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114132013597620