Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_009234.1
Length=35741
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 394 2e-105
>seq52999
Length=1923
Score = 394 bits (436), Expect = 2e-105
Identities = 722/1050 (69%), Gaps = 31/1050 (3%)
Strand=Plus/Plus
Query 2929 GAAGGAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGA 2988
||||||| ||||||| || ||||| |||||||||||||||||| | || || |||
Sbjct 122 GAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGA 181
Query 2989 GCGGCTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAA 3048
||| | || || | |||| | | | | || || ||| |||||||||| |||||
Sbjct 182 GCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGACCTGAATCCGAA 241
Query 3049 GATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCCC--GTAACGAAA----TCAG 3102
| | | |||||| |||||| ||| ||||| | || ||| ||||
Sbjct 242 CGTGGAGAACCGCAACAAGGGCCCG------CGTAAGCCCCCGGAAAAGAACCTGTTCAG 295
Query 3103 CGACGAACAGC---ACAAGC-GCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATC 3158
|||||||||| | |||| ||| || | |||| || ||| |||||| ||| |
Sbjct 296 CGACGAACAGATTGAGAAGCTGCAG----GAGGTTTTCCACGGCTCGATGTTCGGCTACC 351
Query 3159 AGAAAGTCTGGTATCGGAACGGCGATCAGCGCACG---CGCAACATCCTGAAATCGCGGC 3215
|| |||| | ||| || || | | |||||| | ||||| ||||| |
Sbjct 352 AGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCC 411
Query 3216 AGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACCGACC 3275
|||| || || || | | || || ||||||||||| |||| ||||| ||||| |
Sbjct 412 AGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGC 471
Query 3276 GCAATCAGATCTTCCTATCGGCCAGCAAGGCGCAGGCGCACGTCTTCAAGCAATACATCA 3335
|||||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||
Sbjct 472 GCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCA 531
Query 3336 CGCAGTTCGCGCGCGATGCCGCCGACGTCGAGCTCACGGGCGACCCGATCATCTTGCCGA 3395
| || || ||||| | | |||| || || | |||||||||||| | | |
Sbjct 532 TTGAATTTGCCCGCGAGGTGG---ACGTAGACCTGAAGGGCGACCCGATGACGCTCAGTA 588
Query 3396 GCGGTGCGACGCTGTACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCA 3455
||||||| ||||| |||||||| || ||||| || ||||||||| ||||||||||
Sbjct 589 ACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGGCA 648
Query 3456 ACTTCTATTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGT 3515
| | || | || ||||| || ||| | |||||||| | || || | || || ||||
Sbjct 649 ATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGT 708
Query 3516 CGGGCATGGCGATGCACAAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCA 3575
| ||||||||| |||||||| |||||| | |||||||| ||| ||||| || |||
Sbjct 709 CCGGCATGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCA 768
Query 3576 CGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG 3635
||||| || | |||||||| ||| |||| ||| ||||| ||| | |
Sbjct 769 CGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGCTG 828
Query 3636 AGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACG 3695
| || | | || ||| ||||| || | || | ||| | ||||| ||||
Sbjct 829 ACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACG 888
Query 3696 CGCAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTCG 3755
|||| || |||||||| ||||| || ||| || |||||||| ||||||| |
Sbjct 889 GCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTG 948
Query 3756 ACATCGACGAGCTGCGC-CGCGAATACAGCGCCGAGGAATTCGCGAACCTGCTGATGTGC 3814
|| | || |||||||| |||| |||||| | ||||| | | ||||||||||||||||
Sbjct 949 ACCTGGAGCAGCTGCGCACGCG-CTACAGCCCGGAGGATTACCAGAACCTGCTGATGTGC 1007
Query 3815 CACTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTC 3874
||| || |||||| | |||||| ||| ||||| | ||||| ||||||||
Sbjct 1008 GTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATGCATGGTG 1067
Query 3875 GACTCGTGGGAGGAATGGGCGGACGACTTTTCGCCGCTGCTGCTGCGTCCGTTCGGTCAT 3934
||| ||||| | ||| | ||||||| | ||||| |||||| ||||||||
Sbjct 1068 GACAGCTGGGAAGTCTGGAC---CGACTTTGAGGCGCTGGCGCTGCGCCCGTTCGGCTGG 1124
Query 3935 CGCGAGGTGTGGGTCGGCTACGATCCGGCG 3964
|| |||||| |||||||||| || |||
Sbjct 1125 AAAGAAGTGTGGATCGGCTACGACCCCGCG 1154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114132013597620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |