Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq52999 343 3e-90 >seq52999 Length=1923 Score = 343 bits (380), Expect = 3e-90 Identities = 671/984 (68%), Gaps = 28/984 (3%) Strand=Plus/Plus Query 2984 GAAGGAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGA 3043 ||||||| ||||||| || ||||| |||||||||||||||||| | || || ||| Sbjct 122 GAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGA 181 Query 3044 GCGGCTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAA 3103 ||| | || || | |||| | | | | || || ||| |||||||||| ||||| Sbjct 182 GCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGACCTGAATCCGAA 241 Query 3104 GATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCGC--GCAACGAAA----TCAG 3157 | | | |||||| |||||| ||| ||| | | || ||| |||| Sbjct 242 CGTGGAGAACCGCAACAAGGGCCCG------CGTAAGCCCCCGGAAAAGAACCTGTTCAG 295 Query 3158 CGACGAGCAGC---ACAAGC-GCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATC 3213 |||||| ||| | |||| ||| || | |||| || ||| |||||| ||| | Sbjct 296 CGACGAACAGATTGAGAAGCTGCAG----GAGGTTTTCCACGGCTCGATGTTCGGCTACC 351 Query 3214 AGAAAGTCTGGTATCGGAACGGCGATCAGCGCACG---CGCAACATCCTGAAATCGCGGC 3270 || |||| | ||| || || | | |||||| | ||||| ||||| | Sbjct 352 AGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCC 411 Query 3271 AGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACC 3330 |||| || || || | | || || ||||||||||| |||| || || ||||| | Sbjct 412 AGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGC 471 Query 3331 GTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATCA 3390 | ||||| || ||||| || || || ||||| |||||||||||||||||||||||||||| Sbjct 472 GCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCA 531 Query 3391 CGCAGTTCGCGCGCGCGGCGGCCGACATCGAGCTCACGGGCGATCCGATCATCTTGCCGA 3450 | || || |||| || || || | || || | |||||| ||||| | | | Sbjct 532 TTGAATTTGCCCGCGAGGTGGACG---TAGACCTGAAGGGCGACCCGATGACGCTCAGTA 588 Query 3451 GCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCA 3510 ||| ||| ||||| |||||||| || ||||| |||||||||||| || ||||||| Sbjct 589 ACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGGCA 648 Query 3511 ACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCT 3570 | | ||| | || ||||| || ||| | |||||||| | || ||| | || || || | Sbjct 649 ATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGT 708 Query 3571 CCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCA 3630 ||||||||||| |||||||| |||||| | || ||||| ||| ||||||||| ||| Sbjct 709 CCGGCATGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCA 768 Query 3631 CGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG 3690 ||||| || || |||||||| ||| |||| ||| ||||| ||| | | Sbjct 769 CGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGCTG 828 Query 3691 AGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACG 3750 | || | | || ||| ||||| || | || | ||| | ||||| |||| Sbjct 829 ACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACG 888 Query 3751 CGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCG 3810 |||| || |||||||| ||||| |||||| || |||||||| |||||||| | Sbjct 889 GCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTG 948 Query 3811 ACATCGACGAGCTGCGC-CGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGC 3869 || | || |||||||| |||| |||||| | ||||| | | ||| ||||| |||||| Sbjct 949 ACCTGGAGCAGCTGCGCACGCG-CTACAGCCCGGAGGATTACCAGAACCTGCTGATGTGC 1007 Query 3870 CAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTC 3929 || || |||||| | |||||| ||| ||||| | ||||| |||||||| Sbjct 1008 GTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATGCATGGTG 1067 Query 3930 GACTCGTGGGAAGAATGGGCGGAC 3953 ||| ||||||| ||| | ||| Sbjct 1068 GACAGCTGGGAAGTCTGGACCGAC 1091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117165688104080