Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_009236.1
Length=36690
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 343 3e-90
>seq52999
Length=1923
Score = 343 bits (380), Expect = 3e-90
Identities = 671/984 (68%), Gaps = 28/984 (3%)
Strand=Plus/Plus
Query 2984 GAAGGAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGA 3043
||||||| ||||||| || ||||| |||||||||||||||||| | || || |||
Sbjct 122 GAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGA 181
Query 3044 GCGGCTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAA 3103
||| | || || | |||| | | | | || || ||| |||||||||| |||||
Sbjct 182 GCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGACCTGAATCCGAA 241
Query 3104 GATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCGC--GCAACGAAA----TCAG 3157
| | | |||||| |||||| ||| ||| | | || ||| ||||
Sbjct 242 CGTGGAGAACCGCAACAAGGGCCCG------CGTAAGCCCCCGGAAAAGAACCTGTTCAG 295
Query 3158 CGACGAGCAGC---ACAAGC-GCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATC 3213
|||||| ||| | |||| ||| || | |||| || ||| |||||| ||| |
Sbjct 296 CGACGAACAGATTGAGAAGCTGCAG----GAGGTTTTCCACGGCTCGATGTTCGGCTACC 351
Query 3214 AGAAAGTCTGGTATCGGAACGGCGATCAGCGCACG---CGCAACATCCTGAAATCGCGGC 3270
|| |||| | ||| || || | | |||||| | ||||| ||||| |
Sbjct 352 AGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCC 411
Query 3271 AGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACC 3330
|||| || || || | | || || ||||||||||| |||| || || ||||| |
Sbjct 412 AGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGC 471
Query 3331 GTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATCA 3390
| ||||| || ||||| || || || ||||| ||||||||||||||||||||||||||||
Sbjct 472 GCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCA 531
Query 3391 CGCAGTTCGCGCGCGCGGCGGCCGACATCGAGCTCACGGGCGATCCGATCATCTTGCCGA 3450
| || || |||| || || || | || || | |||||| ||||| | | |
Sbjct 532 TTGAATTTGCCCGCGAGGTGGACG---TAGACCTGAAGGGCGACCCGATGACGCTCAGTA 588
Query 3451 GCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCA 3510
||| ||| ||||| |||||||| || ||||| |||||||||||| || |||||||
Sbjct 589 ACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGGCA 648
Query 3511 ACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCT 3570
| | ||| | || ||||| || ||| | |||||||| | || ||| | || || || |
Sbjct 649 ATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGT 708
Query 3571 CCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCA 3630
||||||||||| |||||||| |||||| | || ||||| ||| ||||||||| |||
Sbjct 709 CCGGCATGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCA 768
Query 3631 CGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG 3690
||||| || || |||||||| ||| |||| ||| ||||| ||| | |
Sbjct 769 CGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGCTG 828
Query 3691 AGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACG 3750
| || | | || ||| ||||| || | || | ||| | ||||| ||||
Sbjct 829 ACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACG 888
Query 3751 CGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCG 3810
|||| || |||||||| ||||| |||||| || |||||||| |||||||| |
Sbjct 889 GCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTG 948
Query 3811 ACATCGACGAGCTGCGC-CGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGC 3869
|| | || |||||||| |||| |||||| | ||||| | | ||| ||||| ||||||
Sbjct 949 ACCTGGAGCAGCTGCGCACGCG-CTACAGCCCGGAGGATTACCAGAACCTGCTGATGTGC 1007
Query 3870 CAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTC 3929
|| || |||||| | |||||| ||| ||||| | ||||| ||||||||
Sbjct 1008 GTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATGCATGGTG 1067
Query 3930 GACTCGTGGGAAGAATGGGCGGAC 3953
||| ||||||| ||| | |||
Sbjct 1068 GACAGCTGGGAAGTCTGGACCGAC 1091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117165688104080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |