Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq52999 572 4e-159 >seq52999 Length=1923 Score = 572 bits (634), Expect = 4e-159 Identities = 1031/1498 (69%), Gaps = 37/1498 (2%) Strand=Plus/Minus Query 4200 GCCGGCGTCGAACTCCAGCCTGCCCTTGCTGATCACGTCGTGCGCCTTGAGCACCAGGGC 4259 || |||||| |||||||||| || || ||| ||||| ||||| ||||||||||| Sbjct 1481 GCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCGTAAGCCTTCAGCACCAGGGC 1422 Query 4260 GGTTTTCACGTCCACGGAATAGGTGAAG-CCTTCGGCATCCGGACGGAACTTCTGCACCA 4318 | ||||||||| | | |||| || ||||| | | ||| | | | || || Sbjct 1421 GTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGCGGGAAGAAGGCTTTG-ACAT 1363 Query 4319 GGCGGAACACCGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGCGACGTCGTAGC 4378 | | || || |||| |||||| ||||||||| | |||| ||||| || Sbjct 1362 TCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTATACT 1303 Query 4379 GCTCAGCGAC-GCG-CCGGATGGCGCCGGCCTGTTCCTCGTAGTCGATGCCGCGGAACTG 4436 ||| ||| | ||| || ||||||| | ||||| || | |||| || ||||| |||| Sbjct 1302 GCT--GCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCACTG 1245 Query 4437 GTGCCGCTCCAGCACGCGGAACTTGCCGCCCGGTAC--CAGT-GGCGNNNNNNNNNNNNN 4493 ||| ||||| || | |||||||||||||||||| || ||| || | Sbjct 1244 GTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACGCA 1185 Query 4494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNTT---GGGGTCGTAGCCGACCCACACCGGCCG 4550 || |||||||||||||| |||||| Sbjct 1184 TCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTTCTTT 1125 Query 4551 GTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAGTCTTCCCATACCTCCCAACTGTCCAC 4610 ||||||||| || |||| | || | ||||| ||| || ||||| |||||||| Sbjct 1124 CCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCCAGACTTCCCAGCTGTCCAC 1065 Query 4611 CATCCCGCGCATGAGCATCGCGAGCGGAAACACCGACGCGTTGTCGTCGATGAATACGCA 4670 ||| | | ||||| || ||| | || |||||||| ||||| || || ||||| Sbjct 1064 CATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAAAGACGCA 1005 Query 4671 CATGAGCAGGTTGGCGAAATCGAGTTCGCTGTACTCCAGGCGCAGCTGGTCGAGGTCGAA 4730 ||| |||||||| | |||| |||||| | ||||||||| || ||||| || Sbjct 1004 CATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTGCGCAGCTGCTCCAGGTCAAA 945 Query 4731 CAGGTTGCAGCCGCCGCGGAGCGCATCCTCCACCGTCACGATTTGGCGCCACTGGCCGTC 4790 ||||| ||||||||||| | |||||| || || || ||||| ||||| |||||||||| Sbjct 944 CAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGCGAAACTGGCCGTC 885 Query 4791 CGCGCAGCGCATGCCGTCGCGAAGCGCGGCGTGGCTCAGGTCGAGCTTGATCTGTTTGTC 4850 ||||| | ||| || || | ||||| ||||| | | | | | | | Sbjct 884 TTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAGGTCAATATCAACCCGGTCAGC 825 Query 4851 CTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGACCAGAACGGATAGGCCTCATGCGACAA 4910 |||||| ||| ||||||| | | |||||||||||||||||||| |||| | Sbjct 824 TTTGGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAGGCGCTGTGCGTGAG 765 Query 4911 GCTGGACGGCGTGGAGAAGTAGGTCTGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGC 4970 ||||||||| ||||| |||||||| | ||||| | |||||| | |||||||||||| || Sbjct 764 GCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGCGCCATGCCGGACGC 705 Query 4971 GACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAGTATTCATCGAAGTACAGGTTGCC 5030 || || |||||||||| || ||| | |||||| |||||||| | |||||| ||||| Sbjct 704 CACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAATATTCATCCAGGTACAGATTGCC 645 Query 5031 GTGATACGACTGCGCGGTGCGGGCGTTCGTGCCGAGAAAGTAGAGCGTGGCGCCGTTGGG 5090 |||||| |||||||||||||||||| ||||| || || || || || ||||| Sbjct 644 GTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACCGTTACT 585 Query 5091 CAGCACCATCGGATCGCCCTTCAGCTCGATCCCGGCCGCGTCCTTGGCGAACTGGATGAT 5150 ||| |||||| ||||||||||| || | || || | || ||| || | ||||| Sbjct 584 GAGCGTCATCGGGTCGCCCTTCAGGTCTA---CGTCCACCTCGCGGGCAAATTCAATGAT 528 Query 5151 GTATTGCTTGAAGACGTGCGCCTGCGCCTTGCTGGCCGATAGGAAAATCTGGTTGCGGCC 5210 ||| |||||||||||||||||||||||||| ||||| || ||||| ||||| ||||| || Sbjct 527 GTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATTGCGCCC 468 Query 5211 GGTGGTCAGCGCGTCGATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCG 5270 |||||||||||| ||||| | ||||||||| || || | | || || || ||||| || Sbjct 467 GGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCG 408 Query 5271 GCTCTTGAGCAGGTTGCGGATGCGCTCGACCTGCCCAGCCTCGTACCAGACGCGCTGGTA 5330 ||| ||||||||||||| | | | ||| ||||| |||| ||||||||| Sbjct 407 CGACTTCAGCAGGTTGCGGACGGAGTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTA 348 Query 5331 ATCGAACATCGAGTCGCGGAAGGCCTCCAGGAGCTGC---GTCTGTTCCTCG--GGACTG 5385 ||||||||||| || |||| ||||| | |||| | ||||||| ||| | || | Sbjct 347 GCCGAACATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAG 288 Query 5386 ATCGCATTGCGCTCGGGCTTGCTGCGCGGCCCCTTGTTGCGGTTCGCCACCTTCGGGTTC 5445 | | || | | ||||| | ||||| ||||||||||||||| |||| ||||| ||| Sbjct 287 GT-TCTTTTC-CGGGGGCT---TACGCGGGCCCTTGTTGCGGTTCTCCACGTTCGGATTC 233 Query 5446 AGGTCGGTTTCGTTGCCGC--TGGCCTCGTACCGGCGCACGCGCGCCATGCGCTCCATTT 5503 ||||| | ||| ||||||| | || | | || | || || |||||| | Sbjct 232 AGGTCCGCTTCATTGCCGCCATTGC--TGAATTTGCCGATCCGGGCATGGCGCTCGGACT 175 Query 5504 GTCGGCCAAGCAGGTCGATTTCCTTGTAGTCCCGGCCTTCCTTCACCTCCTTGGCGACGA 5563 | || | |||||||||||||||||| ||||| ||||||||| |||||| || || Sbjct 174 GCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTTCCTTCTGCTCCTTCATGATGA 115 Query 5564 GCTGCGCCAT-GCGCTCTTCGATGCTGTTCGCCACGCGCTCCACTG---CATCCGCCGCG 5619 |||| || | ||| | || || | | || | |||| | ||| | ||| Sbjct 114 GCTG-GCAGTAGCGTGCGGCGGTGGTCAGCTGCATCTGATCCAGCGGGCCAT-AGTCGC- 58 Query 5620 TCCCACCCATCGCGCCGCTTCCAGCTGTGCACCGTCACGGGCTTCACACCCAGCATTT 5677 ||||| ||||||| |||||||||||| || || |||| ||| | |||||||||| Sbjct 57 -CCCACTTATCGCGCTTCTTCCAGCTGTGAACGGTTGCGGGTTTCTCTCCCAGCATTT 1 Score = 109 bits (120), Expect = 1e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 3733 CTTCACGTAGACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGGCCATC 3792 ||||||| || || |||||||| ||| ||||||||||||||| ||||||||| || || Sbjct 1918 CTTCACGCTGATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTC 1859 Query 3793 CCACGG-CATGGGCGGTTCATACCACTGGCCCATGCGCATGCACTCGACGTAATCCAGCA 3851 ||| || ||| ||||||||||| | | || | |||||| ||||| ||||||| Sbjct 1858 A-ACGCTCACGGGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCA 1800 Query 3852 ACTCGCGCCGGTCCAGCACTTCGACGGGATCGCCGAAAGAGAACACCTC 3900 ||||| ||||||||||| || || ||||| || | ||| |||| Sbjct 1799 GTTCGCGGCGGTCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTC 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123782870641880