Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_009382.1
Length=38760
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 572 4e-159
>seq52999
Length=1923
Score = 572 bits (634), Expect = 4e-159
Identities = 1031/1498 (69%), Gaps = 37/1498 (2%)
Strand=Plus/Minus
Query 4200 GCCGGCGTCGAACTCCAGCCTGCCCTTGCTGATCACGTCGTGCGCCTTGAGCACCAGGGC 4259
|| |||||| |||||||||| || || ||| ||||| ||||| |||||||||||
Sbjct 1481 GCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCGTAAGCCTTCAGCACCAGGGC 1422
Query 4260 GGTTTTCACGTCCACGGAATAGGTGAAG-CCTTCGGCATCCGGACGGAACTTCTGCACCA 4318
| ||||||||| | | |||| || ||||| | | ||| | | | || ||
Sbjct 1421 GTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGCGGGAAGAAGGCTTTG-ACAT 1363
Query 4319 GGCGGAACACCGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGCGACGTCGTAGC 4378
| | || || |||| |||||| ||||||||| | |||| ||||| ||
Sbjct 1362 TCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTATACT 1303
Query 4379 GCTCAGCGAC-GCG-CCGGATGGCGCCGGCCTGTTCCTCGTAGTCGATGCCGCGGAACTG 4436
||| ||| | ||| || ||||||| | ||||| || | |||| || ||||| ||||
Sbjct 1302 GCT--GCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCACTG 1245
Query 4437 GTGCCGCTCCAGCACGCGGAACTTGCCGCCCGGTAC--CAGT-GGCGNNNNNNNNNNNNN 4493
||| ||||| || | |||||||||||||||||| || ||| || |
Sbjct 1244 GTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACGCA 1185
Query 4494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNTT---GGGGTCGTAGCCGACCCACACCGGCCG 4550
|| |||||||||||||| ||||||
Sbjct 1184 TCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTTCTTT 1125
Query 4551 GTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAGTCTTCCCATACCTCCCAACTGTCCAC 4610
||||||||| || |||| | || | ||||| ||| || ||||| ||||||||
Sbjct 1124 CCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCCAGACTTCCCAGCTGTCCAC 1065
Query 4611 CATCCCGCGCATGAGCATCGCGAGCGGAAACACCGACGCGTTGTCGTCGATGAATACGCA 4670
||| | | ||||| || ||| | || |||||||| ||||| || || |||||
Sbjct 1064 CATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAAAGACGCA 1005
Query 4671 CATGAGCAGGTTGGCGAAATCGAGTTCGCTGTACTCCAGGCGCAGCTGGTCGAGGTCGAA 4730
||| |||||||| | |||| |||||| | ||||||||| || ||||| ||
Sbjct 1004 CATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTGCGCAGCTGCTCCAGGTCAAA 945
Query 4731 CAGGTTGCAGCCGCCGCGGAGCGCATCCTCCACCGTCACGATTTGGCGCCACTGGCCGTC 4790
||||| ||||||||||| | |||||| || || || ||||| ||||| ||||||||||
Sbjct 944 CAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGCGAAACTGGCCGTC 885
Query 4791 CGCGCAGCGCATGCCGTCGCGAAGCGCGGCGTGGCTCAGGTCGAGCTTGATCTGTTTGTC 4850
||||| | ||| || || | ||||| ||||| | | | | | | |
Sbjct 884 TTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAGGTCAATATCAACCCGGTCAGC 825
Query 4851 CTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGACCAGAACGGATAGGCCTCATGCGACAA 4910
|||||| ||| ||||||| | | |||||||||||||||||||| |||| |
Sbjct 824 TTTGGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAGGCGCTGTGCGTGAG 765
Query 4911 GCTGGACGGCGTGGAGAAGTAGGTCTGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGC 4970
||||||||| ||||| |||||||| | ||||| | |||||| | |||||||||||| ||
Sbjct 764 GCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGCGCCATGCCGGACGC 705
Query 4971 GACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAGTATTCATCGAAGTACAGGTTGCC 5030
|| || |||||||||| || ||| | |||||| |||||||| | |||||| |||||
Sbjct 704 CACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAATATTCATCCAGGTACAGATTGCC 645
Query 5031 GTGATACGACTGCGCGGTGCGGGCGTTCGTGCCGAGAAAGTAGAGCGTGGCGCCGTTGGG 5090
|||||| |||||||||||||||||| ||||| || || || || || |||||
Sbjct 644 GTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACCGTTACT 585
Query 5091 CAGCACCATCGGATCGCCCTTCAGCTCGATCCCGGCCGCGTCCTTGGCGAACTGGATGAT 5150
||| |||||| ||||||||||| || | || || | || ||| || | |||||
Sbjct 584 GAGCGTCATCGGGTCGCCCTTCAGGTCTA---CGTCCACCTCGCGGGCAAATTCAATGAT 528
Query 5151 GTATTGCTTGAAGACGTGCGCCTGCGCCTTGCTGGCCGATAGGAAAATCTGGTTGCGGCC 5210
||| |||||||||||||||||||||||||| ||||| || ||||| ||||| ||||| ||
Sbjct 527 GTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATTGCGCCC 468
Query 5211 GGTGGTCAGCGCGTCGATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCG 5270
|||||||||||| ||||| | ||||||||| || || | | || || || ||||| ||
Sbjct 467 GGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCG 408
Query 5271 GCTCTTGAGCAGGTTGCGGATGCGCTCGACCTGCCCAGCCTCGTACCAGACGCGCTGGTA 5330
||| ||||||||||||| | | | ||| ||||| |||| |||||||||
Sbjct 407 CGACTTCAGCAGGTTGCGGACGGAGTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTA 348
Query 5331 ATCGAACATCGAGTCGCGGAAGGCCTCCAGGAGCTGC---GTCTGTTCCTCG--GGACTG 5385
||||||||||| || |||| ||||| | |||| | ||||||| ||| | || |
Sbjct 347 GCCGAACATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAG 288
Query 5386 ATCGCATTGCGCTCGGGCTTGCTGCGCGGCCCCTTGTTGCGGTTCGCCACCTTCGGGTTC 5445
| | || | | ||||| | ||||| ||||||||||||||| |||| ||||| |||
Sbjct 287 GT-TCTTTTC-CGGGGGCT---TACGCGGGCCCTTGTTGCGGTTCTCCACGTTCGGATTC 233
Query 5446 AGGTCGGTTTCGTTGCCGC--TGGCCTCGTACCGGCGCACGCGCGCCATGCGCTCCATTT 5503
||||| | ||| ||||||| | || | | || | || || |||||| |
Sbjct 232 AGGTCCGCTTCATTGCCGCCATTGC--TGAATTTGCCGATCCGGGCATGGCGCTCGGACT 175
Query 5504 GTCGGCCAAGCAGGTCGATTTCCTTGTAGTCCCGGCCTTCCTTCACCTCCTTGGCGACGA 5563
| || | |||||||||||||||||| ||||| ||||||||| |||||| || ||
Sbjct 174 GCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTTCCTTCTGCTCCTTCATGATGA 115
Query 5564 GCTGCGCCAT-GCGCTCTTCGATGCTGTTCGCCACGCGCTCCACTG---CATCCGCCGCG 5619
|||| || | ||| | || || | | || | |||| | ||| | |||
Sbjct 114 GCTG-GCAGTAGCGTGCGGCGGTGGTCAGCTGCATCTGATCCAGCGGGCCAT-AGTCGC- 58
Query 5620 TCCCACCCATCGCGCCGCTTCCAGCTGTGCACCGTCACGGGCTTCACACCCAGCATTT 5677
||||| ||||||| |||||||||||| || || |||| ||| | ||||||||||
Sbjct 57 -CCCACTTATCGCGCTTCTTCCAGCTGTGAACGGTTGCGGGTTTCTCTCCCAGCATTT 1
Score = 109 bits (120), Expect = 1e-19
Identities = 127/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 3733 CTTCACGTAGACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGGCCATC 3792
||||||| || || |||||||| ||| ||||||||||||||| ||||||||| || ||
Sbjct 1918 CTTCACGCTGATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTC 1859
Query 3793 CCACGG-CATGGGCGGTTCATACCACTGGCCCATGCGCATGCACTCGACGTAATCCAGCA 3851
||| || ||| ||||||||||| | | || | |||||| ||||| |||||||
Sbjct 1858 A-ACGCTCACGGGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCA 1800
Query 3852 ACTCGCGCCGGTCCAGCACTTCGACGGGATCGCCGAAAGAGAACACCTC 3900
||||| ||||||||||| || || ||||| || | ||| ||||
Sbjct 1799 GTTCGCGGCGGTCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTC 1751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123782870641880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |