Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3435 111 1e-19 seq12171 98.7 8e-16 seq180 91.5 1e-13 seq280 86.0 5e-12 >seq3435 Length=63382 Score = 111 bits (122), Expect = 1e-19 Identities = 91/106 (86%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 45759 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 45700 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 115632 ||| ||||||| || ||||||||||| ||| || ||||| ||||| Sbjct 45699 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA-TATGG 45655 Score = 111 bits (122), Expect = 1e-19 Identities = 91/106 (86%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 45759 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 45700 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 114435 ||| ||||||| || ||||||||||| ||| || ||||| ||||| Sbjct 45699 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA-TATGG 45655 Score = 111 bits (122), Expect = 1e-19 Identities = 91/106 (86%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 46538 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 46479 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 115632 ||| ||||||| || ||||||||||| ||| || ||||| ||||| Sbjct 46478 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA-TATGG 46434 Score = 111 bits (122), Expect = 1e-19 Identities = 91/106 (86%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 46538 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 46479 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAAGTATGG 114435 ||| ||||||| || ||||||||||| ||| || ||||| ||||| Sbjct 46478 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA-TATGG 46434 >seq12171 Length=17760 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | |||||| |||||| Sbjct 9100 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 9041 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 9040 ATAACTGATATAATGAGCCTTTTGCGGTTTC 9010 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | |||||| |||||| Sbjct 9100 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 9041 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 9040 ATAACTGATATAATGAGCCTTTTGCGGTTTC 9010 >seq180 Length=417715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 37827 ACGCACGATC-TCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCA 37885 ||||||||| |||| ||||| || || || |||||| | || ||||| || || ||||| Sbjct 107564 ACGCACGATGATCTT-TGGAATGCTGCACAGATTCAGTTGGTTCGCGAAGGCAAAATGCA 107622 Query 37886 TCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC 37945 | | |||||||||||||| || || || ||||||||||||| | | | | Sbjct 107623 CGGATTTCTGCGCATGTATTGGGCGAAAAAGATATTGGAATGGTCTGCTACACCCGAAAT 107682 Query 37946 CGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAA 38005 || || | ||||||| | | |||||||| || || || || || || ||||| || Sbjct 107683 GGCTCTAGAAACCGCCATTCTTTTTAATGATAAATATAGTTTAGATGGACGAGATCCGAA 107742 Query 38006 CGGTTACGTCGG 38017 ||| ||||| || Sbjct 107743 CGGCTACGTAGG 107754 >seq280 Length=341618 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/231 (68%), Gaps = 18/231 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || ||||||||||| || |||||| || ||||||||||| | ||| || Sbjct 106490 AGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGT 106549 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||||||| ||||||||||| || | || |||||||| || | | |||| Sbjct 106550 CCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCT 106609 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT---TCGACC 34086 ||||| ||| || |||| | ||| | ||| ||| ||| || || ||| Sbjct 106610 TTGTCTTGAATCTTG-GCTT--------TTACATTCTCAATAGTATCGGATGGTTCAACC 106660 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || || || || | || ||||| ||||||||||||||| Sbjct 106661 TCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTTT 106711 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/231 (68%), Gaps = 18/231 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || ||||||||||| || |||||| || ||||||||||| | ||| || Sbjct 114736 AGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGT 114795 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||||||| ||||||||||| || | || |||||||| || | | |||| Sbjct 114796 CCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCT 114855 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT---TCGACC 34086 ||||| ||| || |||| | ||| | ||| ||| ||| || || ||| Sbjct 114856 TTGTCTTGAATCTTG-GCTT--------TTACATTCTCAATAGTATCGGATGGTTCAACC 114906 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || || || || | || ||||| ||||||||||||||| Sbjct 114907 TCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTTT 114957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396642986709340