Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq4881 131 4e-25
>seq4881
Length=46776
Score = 131 bits (144), Expect = 4e-25
Identities = 326/487 (67%), Gaps = 6/487 (1%)
Strand=Plus/Minus
Query 297235 GTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGAT 297294
|||||| || ||||| ||||||||| | || || || || ||| ||||| || ||
Sbjct 37387 GTTGTCGACAATGTCCCGTGGATTGTAGTTGGGAATCTTGGTGCTCCACCCGGTGCCAAT 37328
Query 297295 TCCACTCGAA-CCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGA 297353
|| |||| || || ||||| | | ||||| | |||||||| ||||| || || |
Sbjct 37327 GCC-CTCGGCGCCGTTGACCAGCACCATGGGAATGATGGGCACATAGTACTCGGGCTCAA 37269
Query 297354 TCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAA-ACC 297412
||||| |||||| ||||| || || || || || ||| | ||| ||| | |
Sbjct 37268 TCTTGAGGTTGTCATCGTACAGGTAGTTTAGCAGCGGCTCATCCAGCT-GACTAAACAGC 37210
Query 297413 TGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCA 297472
| || | | || | || | || || || || || || || ||| ||||| ||
Sbjct 37209 TTCCGGGCGAGCGGACTGAGCATGGTAAAGATGTAACGGGCGCTGGCGGCGTCCTTGCCG 37150
Query 297473 CCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCG 297532
||||||| | | || |||||||| |||| || | ||| ||||| ||||| |||
Sbjct 37149 CCCTGCAGGCGGGTGCCAAACTGGCCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCG 37090
Query 297533 ACATAATCCTGTGCAAGGTTCACGATGGTCC-CTTGCAGAGATGCTTCGCCATGGTGATA 297591
||| | ||||| || ||||| | ||||||| | || || || | ||||| ||||| ||
Sbjct 37089 ACAAAGTCCTGCGCCAGGTTGATGATGGTCGACATG-AGCGAGACCTCGCCGTGGTGGTA 37031
Query 297592 GGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATT 297651
|||||| ||||| | || | ||| | ||| || ||||| || ||| | | ||
Sbjct 37030 GGCGCTGTGCTCGCCCACCGAGCCGGCCAGCTGCGCCACCTTGACCTCGCGCTTGTCGTT 36971
Query 297652 GCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGA 297711
||||||||| | | | | ||| || || || || |||| || || || | |||
Sbjct 36970 GCGCTTGAAGCAGGTAAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGTCCACCAGCGA 36911
Query 297712 CGGAATG 297718
|||||||
Sbjct 36910 CGGAATG 36904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1101655296564500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |