Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4881 131 4e-25 >seq4881 Length=46776 Score = 131 bits (144), Expect = 4e-25 Identities = 326/487 (67%), Gaps = 6/487 (1%) Strand=Plus/Minus Query 297235 GTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGAT 297294 |||||| || ||||| ||||||||| | || || || || ||| ||||| || || Sbjct 37387 GTTGTCGACAATGTCCCGTGGATTGTAGTTGGGAATCTTGGTGCTCCACCCGGTGCCAAT 37328 Query 297295 TCCACTCGAA-CCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGA 297353 || |||| || || ||||| | | ||||| | |||||||| ||||| || || | Sbjct 37327 GCC-CTCGGCGCCGTTGACCAGCACCATGGGAATGATGGGCACATAGTACTCGGGCTCAA 37269 Query 297354 TCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAA-ACC 297412 ||||| |||||| ||||| || || || || || ||| | ||| ||| | | Sbjct 37268 TCTTGAGGTTGTCATCGTACAGGTAGTTTAGCAGCGGCTCATCCAGCT-GACTAAACAGC 37210 Query 297413 TGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCA 297472 | || | | || | || | || || || || || || || ||| ||||| || Sbjct 37209 TTCCGGGCGAGCGGACTGAGCATGGTAAAGATGTAACGGGCGCTGGCGGCGTCCTTGCCG 37150 Query 297473 CCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCG 297532 ||||||| | | || |||||||| |||| || | ||| ||||| ||||| ||| Sbjct 37149 CCCTGCAGGCGGGTGCCAAACTGGCCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCG 37090 Query 297533 ACATAATCCTGTGCAAGGTTCACGATGGTCC-CTTGCAGAGATGCTTCGCCATGGTGATA 297591 ||| | ||||| || ||||| | ||||||| | || || || | ||||| ||||| || Sbjct 37089 ACAAAGTCCTGCGCCAGGTTGATGATGGTCGACATG-AGCGAGACCTCGCCGTGGTGGTA 37031 Query 297592 GGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATT 297651 |||||| ||||| | || | ||| | ||| || ||||| || ||| | | || Sbjct 37030 GGCGCTGTGCTCGCCCACCGAGCCGGCCAGCTGCGCCACCTTGACCTCGCGCTTGTCGTT 36971 Query 297652 GCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGA 297711 ||||||||| | | | | ||| || || || || |||| || || || | ||| Sbjct 36970 GCGCTTGAAGCAGGTAAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGTCCACCAGCGA 36911 Query 297712 CGGAATG 297718 ||||||| Sbjct 36910 CGGAATG 36904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101655296564500