Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq40302 120 4e-22
seq3737 95.1 1e-14
seq7596 87.8 2e-12
>seq40302
Length=2817
Score = 120 bits (132), Expect = 4e-22
Identities = 358/548 (65%), Gaps = 31/548 (6%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| || || || |||||||| ||||| || ||||| || |||| |||||| | ||||||
Sbjct 1946 GTACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCAT 2005
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
|| ||||| || ||||| ||| | | ||| ||||| || | || || ||
Sbjct 2006 GAAGTCAAAGGGATTCTTGACGTTGTAGTACTTG--GGCACGCCGAGCTCCACCAGCAGC 2063
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| || | | ||||||||||||| |||||| ||| |||||| || ||||||
Sbjct 2064 CGGTCGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCG 2123
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|| || ||||| || |||| ||| ||| || ||||| | ||
Sbjct 2124 ACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCT------------CG 2171
Query 125996 TGAATGGTGTCCACC-CCAGGTC----TATTGC-GCAAAGTCTTG------AAGAGTTCC 126043
| ||| | | |||| || | || || || | | || | |||||
Sbjct 2172 TTGATGATCTGCACCACCCGCTCATCGTACGGCTTCTTAATCAGGTGGCGAAAGAGGAGA 2231
Query 126044 ACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGT 126103
|||||| || ||| || |||||||| ||| ||| || ||||| |||| |||
Sbjct 2232 CAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGG 2291
Query 126104 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAG 126163
|| ||||| || || |||||||||| ||| || || ||| || || |||||||
Sbjct 2292 CCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAAG 2351
Query 126164 ATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGCGACTTT--GTG 126220
|| |||||||| ||||| || | ||| ||||| ||||||| |||| ||| | |
Sbjct 2352 ATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCG 2411
Query 126221 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 126280
| ||| ||| ||||||| |||||| ||| ||| || || | |||||||| ||
Sbjct 2412 GCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGCG 2471
Query 126281 TCAAAGAG 126288
| |||||
Sbjct 2472 TTGAAGAG 2479
>seq3737
Length=58963
Score = 95.1 bits (104), Expect = 1e-14
Identities = 271/413 (66%), Gaps = 4/413 (1%)
Strand=Plus/Minus
Query 10780 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 10839
||||| || ||||||||||||||||| || || || | ||| || || || | |||||
Sbjct 33147 GATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTT 33088
Query 10840 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAG 10899
|| || || | || || | | || | | | ||||| |||||||| | ||
Sbjct 33087 GGTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAG 33028
Query 10900 TTGATTGATGGTTTGTTCGCGTTCATC-ATTCGCGGGCATACCACCCGC-ACTGCGTTGC 10957
||||||| || |||| | | | | | | || | || | | | | || ||| |
Sbjct 33027 CTGATTGAGCGT--GTTCTCCTGCTCCGAGTGGCCGCCAAAGCTGCGACCACCGCGCTTT 32970
Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACT 11017
|||||| ||||||||||| || ||||| | ||| ||||| || | || || |
Sbjct 32969 CGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCATG 32910
Query 11018 TCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCG 11077
|||| ||||| || |||| | | ||| || ||||||||||| |||| ||| | | |
Sbjct 32909 GCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGAG 32850
Query 11078 GCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11137
| ||| | ||||| || || || | ||| || || ||||| ||| || | ||
Sbjct 32849 CCAGAAACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACGTT 32790
Query 11138 TTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190
|| || || |||||| || | || | |||||| || ||| |||||||
Sbjct 32789 TTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737
>seq7596
Length=30452
Score = 87.8 bits (96), Expect = 2e-12
Identities = 261/397 (66%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 8541 TCGGAGATGTTTGGTAAAGTTAGGGA-ATCCCCTCAAAATGAGGAGACACCCTTCTATCC 8599
|| ||| | ||||| ||||| ||| |||||| || ||| || || ||||| ||
Sbjct 25140 TCTGAGCTTTTTGGGAAAGTACAGGAGATCCCC-CAGCGAGAGACCACTCCATTCTACCC 25198
Query 8600 ACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTACCGAGA 8659
|||||| || || ||| |||||| || | ||| | || |||||||| ||
Sbjct 25199 TCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTGTCGTCAATTACCGCGA 25258
Query 8660 ATCCTATG---GTCTCTTTGC-GTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTC 8715
|| || |||| ||||| ||| || || || |||||||| || ||||| |||
Sbjct 25259 GTCATACCCAAGTCTGTTTGCTGTGAAT-GGAATCCTATTCAACCATGAATCACCTCGTA 25317
Query 8716 GTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTCGCGGGTG 8775
| ||| ||| ||||| | || |||||| ||| | | ||| | || |
Sbjct 25318 GAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGAAGATCTACCTTGGAG 25377
Query 8776 AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGG 8835
|| ||| ||||| || |||| |||||| || | | | |||||||| || || |
Sbjct 25378 AGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGACTGGGGCCATGCTCGTG 25437
Query 8836 ACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCG 8895
|||| ||||||||||||||| | | | || |||||| | ||||||| | |||| | |
Sbjct 25438 ACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCCGGACGACTTTGTCATTG 25497
Query 8896 CGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 8932
| || || || | || || || | ||||| || ||
Sbjct 25498 CCACTGGAGAAGCGCATTCAGTGCGAGAGTTTGTCGA 25534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596706442043600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |