Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq40302 120 4e-22 seq3737 95.1 1e-14 seq7596 87.8 2e-12 >seq40302 Length=2817 Score = 120 bits (132), Expect = 4e-22 Identities = 358/548 (65%), Gaps = 31/548 (6%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || |||||||| ||||| || ||||| || |||| |||||| | |||||| Sbjct 1946 GTACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCAT 2005 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || ||||| || ||||| ||| | | ||| ||||| || | || || || Sbjct 2006 GAAGTCAAAGGGATTCTTGACGTTGTAGTACTTG--GGCACGCCGAGCTCCACCAGCAGC 2063 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | | ||||||||||||| |||||| ||| |||||| || |||||| Sbjct 2064 CGGTCGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCG 2123 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || ||||| || |||| ||| ||| || ||||| | || Sbjct 2124 ACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCT------------CG 2171 Query 125996 TGAATGGTGTCCACC-CCAGGTC----TATTGC-GCAAAGTCTTG------AAGAGTTCC 126043 | ||| | | |||| || | || || || | | || | ||||| Sbjct 2172 TTGATGATCTGCACCACCCGCTCATCGTACGGCTTCTTAATCAGGTGGCGAAAGAGGAGA 2231 Query 126044 ACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGT 126103 |||||| || ||| || |||||||| ||| ||| || ||||| |||| ||| Sbjct 2232 CAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGG 2291 Query 126104 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAG 126163 || ||||| || || |||||||||| ||| || || ||| || || ||||||| Sbjct 2292 CCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAAG 2351 Query 126164 ATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGCGACTTT--GTG 126220 || |||||||| ||||| || | ||| ||||| ||||||| |||| ||| | | Sbjct 2352 ATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCG 2411 Query 126221 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 126280 | ||| ||| ||||||| |||||| ||| ||| || || | |||||||| || Sbjct 2412 GCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGCG 2471 Query 126281 TCAAAGAG 126288 | ||||| Sbjct 2472 TTGAAGAG 2479 >seq3737 Length=58963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 271/413 (66%), Gaps = 4/413 (1%) Strand=Plus/Minus Query 10780 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 10839 ||||| || ||||||||||||||||| || || || | ||| || || || | ||||| Sbjct 33147 GATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTT 33088 Query 10840 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAG 10899 || || || | || || | | || | | | ||||| |||||||| | || Sbjct 33087 GGTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAG 33028 Query 10900 TTGATTGATGGTTTGTTCGCGTTCATC-ATTCGCGGGCATACCACCCGC-ACTGCGTTGC 10957 ||||||| || |||| | | | | | | || | || | | | | || ||| | Sbjct 33027 CTGATTGAGCGT--GTTCTCCTGCTCCGAGTGGCCGCCAAAGCTGCGACCACCGCGCTTT 32970 Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACT 11017 |||||| ||||||||||| || ||||| | ||| ||||| || | || || | Sbjct 32969 CGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCATG 32910 Query 11018 TCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCG 11077 |||| ||||| || |||| | | ||| || ||||||||||| |||| ||| | | | Sbjct 32909 GCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGAG 32850 Query 11078 GCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11137 | ||| | ||||| || || || | ||| || || ||||| ||| || | || Sbjct 32849 CCAGAAACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACGTT 32790 Query 11138 TTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 || || || |||||| || | || | |||||| || ||| ||||||| Sbjct 32789 TTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737 >seq7596 Length=30452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 261/397 (66%), Gaps = 7/397 (2%) Strand=Plus/Plus Query 8541 TCGGAGATGTTTGGTAAAGTTAGGGA-ATCCCCTCAAAATGAGGAGACACCCTTCTATCC 8599 || ||| | ||||| ||||| ||| |||||| || ||| || || ||||| || Sbjct 25140 TCTGAGCTTTTTGGGAAAGTACAGGAGATCCCC-CAGCGAGAGACCACTCCATTCTACCC 25198 Query 8600 ACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTACCGAGA 8659 |||||| || || ||| |||||| || | ||| | || |||||||| || Sbjct 25199 TCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTGTCGTCAATTACCGCGA 25258 Query 8660 ATCCTATG---GTCTCTTTGC-GTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTC 8715 || || |||| ||||| ||| || || || |||||||| || ||||| ||| Sbjct 25259 GTCATACCCAAGTCTGTTTGCTGTGAAT-GGAATCCTATTCAACCATGAATCACCTCGTA 25317 Query 8716 GTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTCGCGGGTG 8775 | ||| ||| ||||| | || |||||| ||| | | ||| | || | Sbjct 25318 GAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGAAGATCTACCTTGGAG 25377 Query 8776 AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGG 8835 || ||| ||||| || |||| |||||| || | | | |||||||| || || | Sbjct 25378 AGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGACTGGGGCCATGCTCGTG 25437 Query 8836 ACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCG 8895 |||| ||||||||||||||| | | | || |||||| | ||||||| | |||| | | Sbjct 25438 ACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCCGGACGACTTTGTCATTG 25497 Query 8896 CGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 8932 | || || || | || || || | ||||| || || Sbjct 25498 CCACTGGAGAAGCGCATTCAGTGCGAGAGTTTGTCGA 25534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596706442043600