Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq32170 156 4e-33
seq53698 104 2e-17
>seq32170
Length=3971
Score = 156 bits (172), Expect = 4e-33
Identities = 273/396 (69%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987
|| ||| |||| || || || ||| ||||| | | ||||| || || || | |
Sbjct 3431 CCGCAGCTGTCCTCCTGCTTTCTGCTGACGCTCTCCGAGGACTCGATTGAGGGCATCTAC 3490
Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047
|||| || ||| | || || | |||||| || | || || || || || ||| ||
Sbjct 3491 GACACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCAACGTG 3550
Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107
||| | | || ||| ||| |||||||| |||| || || ||| | ||| || ||
Sbjct 3551 CACTGCATCCGCGCCGCGGGCACCTACATCAGCGGCACAAACGGCGTCAGCAATGGGCTG 3610
Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167
|| || ||||| || |||| ||||||| | || ||||||||||||||||| || | |
Sbjct 3611 GTGCCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGGAACAAG 3670
Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227
| ||| | || || |||| ||||| || |||||||| ||| | | || ||
Sbjct 3671 CGCCCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCGACATCTTCGAGTTTCTC 3730
Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAG---AGGGCCAGAGACCTCTTCTACGCT 94284
|||||||| |||||| |||| || |||| | ||| | ||||||||||||||
Sbjct 3731 GACCTGCGCAAGAACACCGGCTCGGA---GGAGCTCCGTGCCCGCGACCTCTTCTACGCC 3787
Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320
| |||||||| ||||| |||||||| |||||| ||
Sbjct 3788 ATGTGGGTGCCGGACCTCTTTATGAAGCGCGTCCAG 3823
>seq53698
Length=1888
Score = 104 bits (114), Expect = 2e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 95212 GTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTC 95271
||| ||||| | ||||| || | ||||||||| | || | ||| ||| || |
Sbjct 1648 GTCGTCAACCACCACCTGCTGCTCGACCTGACGGAGCGCGGCATCTGGAATGAGGAGCTG 1589
Query 95272 AAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGAC 95331
||||| | | | || | ||||||| || ||| |||| | | || || ||||||
Sbjct 1588 AAGAATGAGATCATCGCCGGCCACGGCTCGGTGCAGGGCATCGCCGAGATTCCCGAGGAC 1529
Query 95332 ATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCG 95391
|||||||| |||||||||||||| |||||||| |||||| | ||| || || ||
Sbjct 1528 ATCAAGGCCCTCTACAAGACCGTCTGGGAGATTCCGCAGAAGGCGATTCTGGAGATGGCC 1469
Query 95392 GCCGCCCGCGGGCCCTTCATCTGCCAG 95418
|||| ||||||| |||||||| ||||
Sbjct 1468 GCCGACCGCGGGGCCTTCATCGACCAG 1442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494187229253200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |