Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq32170 156 4e-33 seq53698 104 2e-17 >seq32170 Length=3971 Score = 156 bits (172), Expect = 4e-33 Identities = 273/396 (69%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 || ||| |||| || || || ||| ||||| | | ||||| || || || | | Sbjct 3431 CCGCAGCTGTCCTCCTGCTTTCTGCTGACGCTCTCCGAGGACTCGATTGAGGGCATCTAC 3490 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 |||| || ||| | || || | |||||| || | || || || || || ||| || Sbjct 3491 GACACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCAACGTG 3550 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 ||| | | || ||| ||| |||||||| |||| || || ||| | ||| || || Sbjct 3551 CACTGCATCCGCGCCGCGGGCACCTACATCAGCGGCACAAACGGCGTCAGCAATGGGCTG 3610 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||||| || |||| ||||||| | || ||||||||||||||||| || | | Sbjct 3611 GTGCCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGGAACAAG 3670 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | || || |||| ||||| || |||||||| ||| | | || || Sbjct 3671 CGCCCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCGACATCTTCGAGTTTCTC 3730 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAG---AGGGCCAGAGACCTCTTCTACGCT 94284 |||||||| |||||| |||| || |||| | ||| | |||||||||||||| Sbjct 3731 GACCTGCGCAAGAACACCGGCTCGGA---GGAGCTCCGTGCCCGCGACCTCTTCTACGCC 3787 Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | |||||||| ||||| |||||||| |||||| || Sbjct 3788 ATGTGGGTGCCGGACCTCTTTATGAAGCGCGTCCAG 3823 >seq53698 Length=1888 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 95212 GTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTC 95271 ||| ||||| | ||||| || | ||||||||| | || | ||| ||| || | Sbjct 1648 GTCGTCAACCACCACCTGCTGCTCGACCTGACGGAGCGCGGCATCTGGAATGAGGAGCTG 1589 Query 95272 AAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGAC 95331 ||||| | | | || | ||||||| || ||| |||| | | || || |||||| Sbjct 1588 AAGAATGAGATCATCGCCGGCCACGGCTCGGTGCAGGGCATCGCCGAGATTCCCGAGGAC 1529 Query 95332 ATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCG 95391 |||||||| |||||||||||||| |||||||| |||||| | ||| || || || Sbjct 1528 ATCAAGGCCCTCTACAAGACCGTCTGGGAGATTCCGCAGAAGGCGATTCTGGAGATGGCC 1469 Query 95392 GCCGCCCGCGGGCCCTTCATCTGCCAG 95418 |||| ||||||| |||||||| |||| Sbjct 1468 GCCGACCGCGGGGCCTTCATCGACCAG 1442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494187229253200