Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq31836 279 2e-70 >seq31836 Length=4037 Score = 279 bits (308), Expect = 2e-70 Identities = 356/484 (74%), Gaps = 10/484 (2%) Strand=Plus/Plus Query 34137 TCCTGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGTAACTCAGGCTGCCAGAT 34196 |||||||||||||||| ||||| ||||||| ||| | | | ||||||||||||| ||| Sbjct 2318 TCCTGAACCGCCCCGGTTTTCCGGGAGAGTTTTTAGTACGGG-AACTCAGGCTGCCTGAT 2376 Query 34197 CATCGTTTCC--GATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCC 34254 | | | ||| | |||||||||||| | || |||||||| | |||| || ||| Sbjct 2377 CTT--TATCCATCAGGGAAGCATAATACGTTTGCTCTGCTTCAACTGGAGCTACATAGCC 2434 Query 34255 CAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTC 34314 | | | |||||||||| || ||||| |||||| ||||| | || |||| || Sbjct 2435 GATGCGTTCCAGCAATCGGCGGTTGTTGAACCAGTTTACCCAGTCCAACGTCGCCAACTC 2494 Query 34315 CAC-TTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCAT 34373 ||| | |||| | |||||||| |||| ||||||||||||||||||||||| | || | Sbjct 2495 CACATCCTGC-CTATTTTTCCAACTCTGCCGGTGTATTACCTCCGCTTTGTATAACCCGT 2553 Query 34374 TGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTA 34433 |||| || || |||| |||||||||||||||||| ||| | ||| |||||||| Sbjct 2554 TGATACTTTCTGCCAACGCGTTGTCATACGAGTCACCTACGGTACCTACTGATGCCATCG 2613 Query 34434 ATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGC 34493 | | || ||||| | ||| | |||||| ||||| || || || || ||||| ||| | Sbjct 2614 CTTCAGCCTCTTTCAATCGTTGCGTATACGCCAGAGAGACGTATTGGGAGCCACGATCAC 2673 Query 34494 TGTGATGGATGGTG---CCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCA 34550 | ||||||||| || ||| || | | |||||| |||||||| ||||| || |||| Sbjct 2674 TATGATGGATGATGCCACCATCTGGTCTTCTGGCCCATAACGCCTGTTCCAGTGCGTCCA 2733 Query 34551 GCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACA 34610 | || || | |||||||| | ||||| || ||||||||||| || || || |||| Sbjct 2734 GAACCAACGAGGTTTCCATGGTTGATGACACTCGCCACCCCACAATAACACCAGCGAACA 2793 Query 34611 CATC 34614 |||| Sbjct 2794 CATC 2797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198544246492860