Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq280 138 8e-28
seq322 93.3 3e-14
>seq280
Length=341618
Score = 138 bits (152), Expect = 8e-28
Identities = 159/212 (75%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|||||||| |||||||| |||||||||||||| |||||| || || || | ||||
Sbjct 106043 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCG--GACAAGGTGCGGCCATCTT 106100
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| | || ||||| ||| | || ||||||||||| || ||| || |||||||| ||
Sbjct 106101 CGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTT 106160
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
|||||| ||| ||| |||| ||||||||| | ||| || || | || |||||||
Sbjct 106161 GGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTT 106220
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || |||| ||||| ||||| |||||||||
Sbjct 106221 TGCCAGTCAATGTTTTAACAAATATTTGCATA 106252
Score = 138 bits (152), Expect = 8e-28
Identities = 159/212 (75%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|||||||| |||||||| |||||||||||||| |||||| || || || | ||||
Sbjct 114289 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCG--GACAAGGTGCGGCCATCTT 114346
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| | || ||||| ||| | || ||||||||||| || ||| || |||||||| ||
Sbjct 114347 CGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTT 114406
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
|||||| ||| ||| |||| ||||||||| | ||| || || | || |||||||
Sbjct 114407 GGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTT 114466
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || |||| ||||| ||||| |||||||||
Sbjct 114467 TGCCAGTCAATGTTTTAACAAATATTTGCATA 114498
Score = 129 bits (142), Expect = 4e-25
Identities = 173/239 (72%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | | ||| | |||||| ||||| || ||||| ||||||||||||
Sbjct 106479 TGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG- 106537
Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
|| || || ||||||| ||||||||||| || | || ||||| || || ||
Sbjct 106538 -GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGG 106596
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
|||||| || || ||||| ||| ||| ||||||| | || ||||||||| |||
Sbjct 106597 TGGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTC 106656
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184
|| || | || ||||| || || |||| ||| || || || |||||||| |||||||
Sbjct 106657 AACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAAA 106715
Score = 129 bits (142), Expect = 4e-25
Identities = 173/239 (72%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | | ||| | |||||| ||||| || ||||| ||||||||||||
Sbjct 114725 TGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG- 114783
Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
|| || || ||||||| ||||||||||| || | || ||||| || || ||
Sbjct 114784 -GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGG 114842
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
|||||| || || ||||| ||| ||| ||||||| | || ||||||||| |||
Sbjct 114843 TGGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTC 114902
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184
|| || | || ||||| || || |||| ||| || || || |||||||| |||||||
Sbjct 114903 AACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAAA 114961
Score = 114 bits (126), Expect = 9e-21
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022
||||||||||| | ||||| || || || || ||||| || || ||| || | |
Sbjct 106268 AAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA--GACAATGTGCGTCCAT 106325
Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082
| || || || ||||||||| | || ||||| ||||| || ||| ||||||||||| |
Sbjct 106326 CCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTAT 106385
Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142
| |||||| ||| ||| | || || |||||| | || || || || || ||||
Sbjct 106386 CCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGG 106445
Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||||| |||| |||||| || ||||| |||||
Sbjct 106446 TTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479
Score = 114 bits (126), Expect = 9e-21
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022
||||||||||| | ||||| || || || || ||||| || || ||| || | |
Sbjct 114514 AAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA--GACAATGTGCGTCCAT 114571
Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082
| || || || ||||||||| | || ||||| ||||| || ||| ||||||||||| |
Sbjct 114572 CCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTAT 114631
Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142
| |||||| ||| ||| | || || |||||| | || || || || || ||||
Sbjct 114632 CCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGG 114691
Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||||| |||| |||||| || ||||| |||||
Sbjct 114692 TTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725
Score = 102 bits (112), Expect = 6e-17
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|| ||||| |||||||| || ||||| |||||||| || || || || ||||||
Sbjct 105131 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCC--GACAAGGTGCGGCCGTCTT 105188
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| |||||||| || ||| | |||||||| ||||| || ||||| ||||| || ||
Sbjct 105189 CCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTT 105248
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||| ||| || || |||| || || || || || || ||||| |||||||
Sbjct 105249 GAATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTT 105308
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|||| || || || || || || |||||||||
Sbjct 105309 TACCAGTTAGGGTCTTCACGAAGATTTGCATA 105340
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||| || || || || || || || ||||| ||| | | | | |||||||
Sbjct 104675 ACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCGTCTTCC 104734
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| ||||| || || | |||||||||||||| || ||||| |||||||| ||
Sbjct 104735 AACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCCTGG 104794
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|||||| ||| ||| |||| || || || || || || ||||| |||||||||
Sbjct 104795 ATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 104854
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| ||||| || || || || || ||||||
Sbjct 104855 CCGGTCAGTGTCTTCACGAAGATCTGCATA 104884
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||| |||||||| || ||||| ||||| |||||| | | | | | |||||
Sbjct 104903 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGGCCATCTTCG 104962
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || ||||| ||| | || ||||||||||| || ||| || ||||| |||||
Sbjct 104963 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCTTTGTCCTGG 105022
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| || || | || || || || || || || ||||| ||||||||
Sbjct 105023 ATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTG 105082
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| |||||||| || || ||||||||||||
Sbjct 105083 CCAGTCAGAGTCTTGACGAAAATTTGCATA 105112
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025
|| ||||| |||||||| || ||||| |||||||| || || || | | | ||||||
Sbjct 105359 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCC--GACAAGGTGCGCCCGTCTT 105416
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| | || || ||||| | |||||||| || ||||| ||||| |||||||||||
Sbjct 105417 CGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTT 105476
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||| ||| || || |||| || || ||| || || || ||||| || ||||
Sbjct 105477 GAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTATAGTTT 105536
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || ||||| || || || || ||||||||
Sbjct 105537 TGCCAGTCAGGGTCTTCACGAAGATTTGCAT 105567
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|| ||||| || ||||| || ||||| |||||||| || || || || | ||||
Sbjct 105815 ACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCA--GACAAGGTGCGGCCATCTT 105872
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| | |||||||| ||| | ||||||||||| || || ||||| |||||||| ||
Sbjct 105873 CAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATCTT 105932
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
|| ||| ||| ||| |||| || || || || || || ||||| || ||||
Sbjct 105933 GGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGTTT 105992
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || || || || || || || |||||||||
Sbjct 105993 TGCCAGTTAGGGTCTTCACGAAGATTTGCATA 106024
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|| ||||| || ||||| || ||||| |||||||| || || || || | ||||
Sbjct 114061 ACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCA--GACAAGGTGCGGCCATCTT 114118
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| | |||||||| ||| | ||||||||||| || || ||||| |||||||| ||
Sbjct 114119 CAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATCTT 114178
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
|| ||| ||| ||| |||| || || || || || || ||||| || ||||
Sbjct 114179 GGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGTTT 114238
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || || || || || || || |||||||||
Sbjct 114239 TGCCAGTTAGGGTCTTCACGAAGATTTGCATA 114270
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024
||| || || || ||||| || ||||| |||||||| ||| || || || | |||
Sbjct 105586 AACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGGCCATCT 105643
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| | ||| ||||| ||| | || |||||||| || || ||||| || ||||||||
Sbjct 105644 TCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 105703
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
|| || ||| || | || || || ||| || || || || || ||||||
Sbjct 105704 TGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTT 105763
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| || || || || ||||| || ||||||
Sbjct 105764 TTACCAGTTAGGGTCTTCACAAATATCTGCATA 105796
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024
||| || || || ||||| || ||||| |||||||| ||| || || || | |||
Sbjct 113832 AACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGGCCATCT 113889
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| | ||| ||||| ||| | || |||||||| || || ||||| || ||||||||
Sbjct 113890 TCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 113949
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
|| || ||| || | || || || ||| || || || || || ||||||
Sbjct 113950 TGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTT 114009
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| || || || || ||||| || ||||||
Sbjct 114010 TTACCAGTTAGGGTCTTCACAAATATCTGCATA 114042
>seq322
Length=316913
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CTGAGAATTCTCGCGTCTTC 15026
|||||||| | ||||| || ||||| || ||||||||| || || ||| | | |||||
Sbjct 56220 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGCTAAGG-TTCGCCCATCTTC 56278
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
|||||| || || ||| | || | |||||||| || || || |||||||||||
Sbjct 56279 TAATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGGGATCCCTTCCTTGTCTTG 56338
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|||||| || ||| || || ||||| | || || || | ||||| || ||
Sbjct 56339 AATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTT 56398
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || |||||||||||
Sbjct 56399 GCCCGTTAGGGTCTTAACGAAAATTTGCAT 56428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357014490180950
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