Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq280 138 8e-28 seq322 93.3 3e-14 >seq280 Length=341618 Score = 138 bits (152), Expect = 8e-28 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||||||| |||||||| |||||||||||||| |||||| || || || | |||| Sbjct 106043 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCG--GACAAGGTGCGGCCATCTT 106100 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | || ||||| ||| | || ||||||||||| || ||| || |||||||| || Sbjct 106101 CGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTT 106160 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| ||| ||| |||| ||||||||| | ||| || || | || ||||||| Sbjct 106161 GGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTT 106220 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||| ||||| ||||| ||||||||| Sbjct 106221 TGCCAGTCAATGTTTTAACAAATATTTGCATA 106252 Score = 138 bits (152), Expect = 8e-28 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||||||| |||||||| |||||||||||||| |||||| || || || | |||| Sbjct 114289 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCG--GACAAGGTGCGGCCATCTT 114346 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | || ||||| ||| | || ||||||||||| || ||| || |||||||| || Sbjct 114347 CGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTT 114406 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| ||| ||| |||| ||||||||| | ||| || || | || ||||||| Sbjct 114407 GGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTT 114466 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||| ||||| ||||| ||||||||| Sbjct 114467 TGCCAGTCAATGTTTTAACAAATATTTGCATA 114498 Score = 129 bits (142), Expect = 4e-25 Identities = 173/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| | |||||| ||||| || ||||| |||||||||||| Sbjct 106479 TGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG- 106537 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || || ||||||| ||||||||||| || | || ||||| || || || Sbjct 106538 -GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGG 106596 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| || || ||||| ||| ||| ||||||| | || ||||||||| ||| Sbjct 106597 TGGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTC 106656 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || | || ||||| || || |||| ||| || || || |||||||| ||||||| Sbjct 106657 AACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAAA 106715 Score = 129 bits (142), Expect = 4e-25 Identities = 173/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| | |||||| ||||| || ||||| |||||||||||| Sbjct 114725 TGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG- 114783 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || || ||||||| ||||||||||| || | || ||||| || || || Sbjct 114784 -GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGG 114842 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| || || ||||| ||| ||| ||||||| | || ||||||||| ||| Sbjct 114843 TGGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTC 114902 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || | || ||||| || || |||| ||| || || || |||||||| ||||||| Sbjct 114903 AACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAAA 114961 Score = 114 bits (126), Expect = 9e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 ||||||||||| | ||||| || || || || ||||| || || ||| || | | Sbjct 106268 AAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA--GACAATGTGCGTCCAT 106325 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 | || || || ||||||||| | || ||||| ||||| || ||| ||||||||||| | Sbjct 106326 CCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTAT 106385 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | |||||| ||| ||| | || || |||||| | || || || || || |||| Sbjct 106386 CCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGG 106445 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| |||| |||||| || ||||| ||||| Sbjct 106446 TTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479 Score = 114 bits (126), Expect = 9e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 ||||||||||| | ||||| || || || || ||||| || || ||| || | | Sbjct 114514 AAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA--GACAATGTGCGTCCAT 114571 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 | || || || ||||||||| | || ||||| ||||| || ||| ||||||||||| | Sbjct 114572 CCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTAT 114631 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | |||||| ||| ||| | || || |||||| | || || || || || |||| Sbjct 114632 CCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGG 114691 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| |||| |||||| || ||||| ||||| Sbjct 114692 TTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725 Score = 102 bits (112), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| |||||||| || ||||| |||||||| || || || || |||||| Sbjct 105131 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCC--GACAAGGTGCGGCCGTCTT 105188 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | |||||||| || ||| | |||||||| ||||| || ||||| ||||| || || Sbjct 105189 CCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTT 105248 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||| || || |||| || || || || || || ||||| ||||||| Sbjct 105249 GAATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTT 105308 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || || || || || || ||||||||| Sbjct 105309 TACCAGTTAGGGTCTTCACGAAGATTTGCATA 105340 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || || || || ||||| ||| | | | | ||||||| Sbjct 104675 ACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCGTCTTCC 104734 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || ||||| || || | |||||||||||||| || ||||| |||||||| || Sbjct 104735 AACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCCTGG 104794 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| |||| || || || || || || ||||| ||||||||| Sbjct 104795 ATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 104854 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || || || || || |||||| Sbjct 104855 CCGGTCAGTGTCTTCACGAAGATCTGCATA 104884 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| |||||||| || ||||| ||||| |||||| | | | | | ||||| Sbjct 104903 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGGCCATCTTCG 104962 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | || ||||||||||| || ||| || ||||| ||||| Sbjct 104963 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCTTTGTCCTGG 105022 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || || || || || ||||| |||||||| Sbjct 105023 ATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTG 105082 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| || || |||||||||||| Sbjct 105083 CCAGTCAGAGTCTTGACGAAAATTTGCATA 105112 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025 || ||||| |||||||| || ||||| |||||||| || || || | | | |||||| Sbjct 105359 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCC--GACAAGGTGCGCCCGTCTT 105416 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | || || ||||| | |||||||| || ||||| ||||| ||||||||||| Sbjct 105417 CGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTT 105476 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||| || || |||| || || ||| || || || ||||| || |||| Sbjct 105477 GAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTATAGTTT 105536 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| || || || || |||||||| Sbjct 105537 TGCCAGTCAGGGTCTTCACGAAGATTTGCAT 105567 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| || ||||| || ||||| |||||||| || || || || | |||| Sbjct 105815 ACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCA--GACAAGGTGCGGCCATCTT 105872 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | |||||||| ||| | ||||||||||| || || ||||| |||||||| || Sbjct 105873 CAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATCTT 105932 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || ||| ||| ||| |||| || || || || || || ||||| || |||| Sbjct 105933 GGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGTTT 105992 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || || ||||||||| Sbjct 105993 TGCCAGTTAGGGTCTTCACGAAGATTTGCATA 106024 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| || ||||| || ||||| |||||||| || || || || | |||| Sbjct 114061 ACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCA--GACAAGGTGCGGCCATCTT 114118 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | |||||||| ||| | ||||||||||| || || ||||| |||||||| || Sbjct 114119 CAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATCTT 114178 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || ||| ||| ||| |||| || || || || || || ||||| || |||| Sbjct 114179 GGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGTTT 114238 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || || ||||||||| Sbjct 114239 TGCCAGTTAGGGTCTTCACGAAGATTTGCATA 114270 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || || || ||||| || ||||| |||||||| ||| || || || | ||| Sbjct 105586 AACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGGCCATCT 105643 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| ||||| ||| | || |||||||| || || ||||| || |||||||| Sbjct 105644 TCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 105703 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || ||| || | || || || ||| || || || || || |||||| Sbjct 105704 TGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTT 105763 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || ||||| || |||||| Sbjct 105764 TTACCAGTTAGGGTCTTCACAAATATCTGCATA 105796 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || || || ||||| || ||||| |||||||| ||| || || || | ||| Sbjct 113832 AACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGGCCATCT 113889 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| ||||| ||| | || |||||||| || || ||||| || |||||||| Sbjct 113890 TCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCC 113949 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || ||| || | || || || ||| || || || || || |||||| Sbjct 113950 TGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTT 114009 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || ||||| || |||||| Sbjct 114010 TTACCAGTTAGGGTCTTCACAAATATCTGCATA 114042 >seq322 Length=316913 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CTGAGAATTCTCGCGTCTTC 15026 |||||||| | ||||| || ||||| || ||||||||| || || ||| | | ||||| Sbjct 56220 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGCTAAGG-TTCGCCCATCTTC 56278 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||| || || ||| | || | |||||||| || || || ||||||||||| Sbjct 56279 TAATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGGGATCCCTTCCTTGTCTTG 56338 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| || || ||||| | || || || | ||||| || || Sbjct 56339 AATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTT 56398 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||||||||| Sbjct 56399 GCCCGTTAGGGTCTTAACGAAAATTTGCAT 56428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357014490180950