Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq81708 203 3e-47 seq85787 127 2e-24 >seq81708 Length=1085 Score = 203 bits (224), Expect = 3e-47 Identities = 159/190 (84%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 60956 TGCCATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 61015 ||| |||||| || || ||||| ||||||| ||||| || |||||||| || || ||| Sbjct 233 TGCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTC 292 Query 61016 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 61075 || | ||||||||| || ||||| ||||| || || ||||||| ||| |||||||||||| Sbjct 293 AGCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCC 352 Query 61076 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 61135 ||||| || || |||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct 353 GGATGGTTCACGGCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGA 412 Query 61136 CCACCTTCAA 61145 |||||||||| Sbjct 413 CCACCTTCAA 422 >seq85787 Length=1013 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 60956 TGCCATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 61015 ||| ||||||| || || || ||||| | || || || |||||| || ||| Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643 Query 61016 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 61075 || ||||| ||||| || ||||| || || || ||||||||||||||||||||||| ||| Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703 Query 61076 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 61135 ||||| | | ||||| ||| | |||||| || ||||| |||||||| |||||| Sbjct 704 GGATGTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGA 763 Query 61136 CCACCTTC 61143 |||||||| Sbjct 764 CCACCTTC 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528671429414800