Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq40302 118 1e-21
seq3737 109 7e-19
seq4881 105 8e-18
seq7596 82.4 9e-11
>seq40302
Length=2817
Score = 118 bits (130), Expect = 1e-21
Identities = 361/550 (66%), Gaps = 35/550 (6%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| || ||||| |||||||| ||||| || ||||| || || |||||||| | ||||||
Sbjct 1946 GTACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCAT 2005
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| ||||| || ||||| ||| | | ||| ||||| || | || || ||
Sbjct 2006 GAAGTCAAAGGGATTCTTGACGTTGTAGTACTTG--GGCACGCCGAGCTCCACCAGCAGC 2063
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| || | | ||||||||||||| |||||| ||| |||||| || ||||||
Sbjct 2064 CGGTCGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCG 2123
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || ||||| || |||| ||| ||| ||| || || | ||| ||||
Sbjct 2124 ACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGC--CTCGT-TGATGATC 2180
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAG--TCTTGAAGAGTT--CCACA----- 127519
|| | |||||| | || || |||| | |||| | || | | | |
Sbjct 2181 TGCA------CCACCC--GCTC-AT--CGTACGGCTTCTTAATCAGGTGGCGAAAGAGGA 2229
Query 127520 -----GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 127574
||||| || ||| || |||||||| ||| ||| || ||||| |||| ||
Sbjct 2230 GACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCA 2289
Query 127575 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 127634
| || ||||| || || |||||||||| ||| || || ||| ||||| |||||
Sbjct 2290 GGCCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGA 2349
Query 127635 AGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTT---G 127691
|||| |||||||| ||||| || | || ||||||||||||| | | ||| |
Sbjct 2350 AGATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGG 2409
Query 127692 TATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCG 127751
| ||| ||| ||||||| ||||| ||| ||| || || | |||||||| |
Sbjct 2410 CGGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGG 2469
Query 127752 CTTCAAAGAG 127761
| | |||||
Sbjct 2470 CGTTGAAGAG 2479
>seq3737
Length=58963
Score = 109 bits (120), Expect = 7e-19
Identities = 274/413 (66%), Gaps = 4/413 (1%)
Strand=Plus/Minus
Query 12695 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 12754
||||| || ||||||||||||||||| || || || | ||| || || || | |||||
Sbjct 33147 GATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTT 33088
Query 12755 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAG 12814
|| || || | || || | | || | | | |||||| |||||||| | ||
Sbjct 33087 GGTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAG 33028
Query 12815 TTGATTGATGGTTTGTTCACGTTCATC-ATTCGCGGGCATACCACCCGC-ACTGCGTTGC 12872
||||||| || |||| | | | | | | || | || | | | | || ||| |
Sbjct 33027 CTGATTGAGCGT--GTTCTCCTGCTCCGAGTGGCCGCCAAAGCTGCGACCACCGCGCTTT 32970
Query 12873 TTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACT 12932
|||||| |||||||||||||||||||| | ||| ||||| || | || || |
Sbjct 32969 CGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCATG 32910
Query 12933 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 12992
|||| ||||| || |||| | | ||| || |||||||||||||||| ||| | | |
Sbjct 32909 GCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGAG 32850
Query 12993 GCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052
| ||| | ||||| || || || | ||| || || ||||| ||| || | ||
Sbjct 32849 CCAGAAACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACGTT 32790
Query 13053 TTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105
|| || || || ||| || | || | |||||| || ||| |||||||
Sbjct 32789 TTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737
>seq4881
Length=46776
Score = 105 bits (116), Expect = 8e-18
Identities = 277/421 (66%), Gaps = 4/421 (1%)
Strand=Plus/Minus
Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807
|| |||||||| || |||| |||||| || || ||||| |||| | |||| |||| |
Sbjct 37338 CCGGTGCCAATGCCCTCGGCGCCGTTGACCAGCACCATGGGAATGATGGGCACATAGTAC 37279
Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGGA 175867
|| || |||||| | ||||||| || ||||| |||| || |||||| | ||
Sbjct 37278 TCGGGCTCAATCTTGAGGTTGTCATCGTACAGGTAGTTTAGCAGCGGCTCATCCAGCTGA 37219
Query 175868 TCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCT--CGTTTGAGACG 175925
||| | || || || | |||| | || |||||||| | || | | | ||
Sbjct 37218 CTAAACAGCTTCCGGGCGAGCGGACTGAGCATGGTAAAGATGTAACGGGCGCTGGCGGCG 37159
Query 175926 CATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATAT 175985
|| ||||| ||| || || || ||||| || ||| ||| || || || || |
Sbjct 37158 --TCCTTGCCGCCCTGCAGGCGGGTGCCAAACTGGCCAATGGGCATCAGCAGGTTAATGT 37101
Query 175986 TGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCAC 176045
|||| ||| | | |||| | ||||| |||| || || | ||| ||||| || |
Sbjct 37100 TGTTGCTGCCGACAAAGTCCTGCGCCAGGTTGATGATGGTCGACATGAGCGAGACCTCGC 37041
Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105
|||| |||||||| | || |||| | | |||| |||||||||||| | |||
Sbjct 37040 CGTGGTGGTAGGCGCTGTGCTCGCCCACCGAGCCGGCCAGCTGCGCCACCTTGACCTCGC 36981
Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165
|||| ||| | |||||| | | | | ||||| | ||| |||||||| ||||
Sbjct 36980 GCTTGTCGTTGCGCTTGAAGCAGGTAAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGT 36921
Query 176166 C 176166
|
Sbjct 36920 C 36920
>seq7596
Length=30452
Score = 82.4 bits (90), Expect = 9e-11
Identities = 260/397 (65%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 10456 TCGGAGATGTTTGGTAAAGTTAGGGA-ATCCCCACAAAATGAGGAGACGCCCTTCTATCC 10514
|| ||| | ||||| ||||| ||| |||||| || ||| || || ||||| ||
Sbjct 25140 TCTGAGCTTTTTGGGAAAGTACAGGAGATCCCC-CAGCGAGAGACCACTCCATTCTACCC 25198
Query 10515 ACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTATCGCGA 10574
|||||| || || ||| |||||| || | ||| | || ||||| |||||
Sbjct 25199 TCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTGTCGTCAATTACCGCGA 25258
Query 10575 ATCCTATG---GTCTCTTTG-TGTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTC 10630
|| || |||| |||| |||| || || || |||||||| || ||||| |||
Sbjct 25259 GTCATACCCAAGTCTGTTTGCTGTGAAT-GGAATCCTATTCAACCATGAATCACCTCGTA 25317
Query 10631 GTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTGGCGGGTG 10690
| ||| ||| ||||| | || |||||| ||| | | ||| || |
Sbjct 25318 GAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGAAGATCTACCTTGGAG 25377
Query 10691 AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGG 10750
|| ||| ||||| || |||| |||||| || | | | |||||||| || || |
Sbjct 25378 AGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGACTGGGGCCATGCTCGTG 25437
Query 10751 ACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCG 10810
|||| ||||||||||||||| | | | || |||||| | ||||||| | |||| | |
Sbjct 25438 ACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCCGGACGACTTTGTCATTG 25497
Query 10811 CGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 10847
| || || || | || || || | ||||| || ||
Sbjct 25498 CCACTGGAGAAGCGCATTCAGTGCGAGAGTTTGTCGA 25534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612842541637200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |