Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq40302 118 1e-21 seq3737 109 7e-19 seq4881 105 8e-18 seq7596 82.4 9e-11 >seq40302 Length=2817 Score = 118 bits (130), Expect = 1e-21 Identities = 361/550 (66%), Gaps = 35/550 (6%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| |||||||| ||||| || ||||| || || |||||||| | |||||| Sbjct 1946 GTACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCAT 2005 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || ||||| || ||||| ||| | | ||| ||||| || | || || || Sbjct 2006 GAAGTCAAAGGGATTCTTGACGTTGTAGTACTTG--GGCACGCCGAGCTCCACCAGCAGC 2063 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | | ||||||||||||| |||||| ||| |||||| || |||||| Sbjct 2064 CGGTCGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCG 2123 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || ||||| || |||| ||| ||| ||| || || | ||| |||| Sbjct 2124 ACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGC--CTCGT-TGATGATC 2180 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAG--TCTTGAAGAGTT--CCACA----- 127519 || | |||||| | || || |||| | |||| | || | | | | Sbjct 2181 TGCA------CCACCC--GCTC-AT--CGTACGGCTTCTTAATCAGGTGGCGAAAGAGGA 2229 Query 127520 -----GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 127574 ||||| || ||| || |||||||| ||| ||| || ||||| |||| || Sbjct 2230 GACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCA 2289 Query 127575 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 127634 | || ||||| || || |||||||||| ||| || || ||| ||||| ||||| Sbjct 2290 GGCCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGA 2349 Query 127635 AGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTT---G 127691 |||| |||||||| ||||| || | || ||||||||||||| | | ||| | Sbjct 2350 AGATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGG 2409 Query 127692 TATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCG 127751 | ||| ||| ||||||| ||||| ||| ||| || || | |||||||| | Sbjct 2410 CGGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGG 2469 Query 127752 CTTCAAAGAG 127761 | | ||||| Sbjct 2470 CGTTGAAGAG 2479 >seq3737 Length=58963 Score = 109 bits (120), Expect = 7e-19 Identities = 274/413 (66%), Gaps = 4/413 (1%) Strand=Plus/Minus Query 12695 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 12754 ||||| || ||||||||||||||||| || || || | ||| || || || | ||||| Sbjct 33147 GATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTT 33088 Query 12755 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAG 12814 || || || | || || | | || | | | |||||| |||||||| | || Sbjct 33087 GGTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAG 33028 Query 12815 TTGATTGATGGTTTGTTCACGTTCATC-ATTCGCGGGCATACCACCCGC-ACTGCGTTGC 12872 ||||||| || |||| | | | | | | || | || | | | | || ||| | Sbjct 33027 CTGATTGAGCGT--GTTCTCCTGCTCCGAGTGGCCGCCAAAGCTGCGACCACCGCGCTTT 32970 Query 12873 TTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACT 12932 |||||| |||||||||||||||||||| | ||| ||||| || | || || | Sbjct 32969 CGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCATG 32910 Query 12933 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 12992 |||| ||||| || |||| | | ||| || |||||||||||||||| ||| | | | Sbjct 32909 GCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGAG 32850 Query 12993 GCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 | ||| | ||||| || || || | ||| || || ||||| ||| || | || Sbjct 32849 CCAGAAACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACGTT 32790 Query 13053 TTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 || || || || ||| || | || | |||||| || ||| ||||||| Sbjct 32789 TTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737 >seq4881 Length=46776 Score = 105 bits (116), Expect = 8e-18 Identities = 277/421 (66%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || |||||||| || |||| |||||| || || ||||| |||| | |||| |||| | Sbjct 37338 CCGGTGCCAATGCCCTCGGCGCCGTTGACCAGCACCATGGGAATGATGGGCACATAGTAC 37279 Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGGA 175867 || || |||||| | ||||||| || ||||| |||| || |||||| | || Sbjct 37278 TCGGGCTCAATCTTGAGGTTGTCATCGTACAGGTAGTTTAGCAGCGGCTCATCCAGCTGA 37219 Query 175868 TCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCT--CGTTTGAGACG 175925 ||| | || || || | |||| | || |||||||| | || | | | || Sbjct 37218 CTAAACAGCTTCCGGGCGAGCGGACTGAGCATGGTAAAGATGTAACGGGCGCTGGCGGCG 37159 Query 175926 CATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATAT 175985 || ||||| ||| || || || ||||| || ||| ||| || || || || | Sbjct 37158 --TCCTTGCCGCCCTGCAGGCGGGTGCCAAACTGGCCAATGGGCATCAGCAGGTTAATGT 37101 Query 175986 TGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCAC 176045 |||| ||| | | |||| | ||||| |||| || || | ||| ||||| || | Sbjct 37100 TGTTGCTGCCGACAAAGTCCTGCGCCAGGTTGATGATGGTCGACATGAGCGAGACCTCGC 37041 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 |||| |||||||| | || |||| | | |||| |||||||||||| | ||| Sbjct 37040 CGTGGTGGTAGGCGCTGTGCTCGCCCACCGAGCCGGCCAGCTGCGCCACCTTGACCTCGC 36981 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 |||| ||| | |||||| | | | | ||||| | ||| |||||||| |||| Sbjct 36980 GCTTGTCGTTGCGCTTGAAGCAGGTAAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGT 36921 Query 176166 C 176166 | Sbjct 36920 C 36920 >seq7596 Length=30452 Score = 82.4 bits (90), Expect = 9e-11 Identities = 260/397 (65%), Gaps = 7/397 (2%) Strand=Plus/Plus Query 10456 TCGGAGATGTTTGGTAAAGTTAGGGA-ATCCCCACAAAATGAGGAGACGCCCTTCTATCC 10514 || ||| | ||||| ||||| ||| |||||| || ||| || || ||||| || Sbjct 25140 TCTGAGCTTTTTGGGAAAGTACAGGAGATCCCC-CAGCGAGAGACCACTCCATTCTACCC 25198 Query 10515 ACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTATCGCGA 10574 |||||| || || ||| |||||| || | ||| | || ||||| ||||| Sbjct 25199 TCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTGTCGTCAATTACCGCGA 25258 Query 10575 ATCCTATG---GTCTCTTTG-TGTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTC 10630 || || |||| |||| |||| || || || |||||||| || ||||| ||| Sbjct 25259 GTCATACCCAAGTCTGTTTGCTGTGAAT-GGAATCCTATTCAACCATGAATCACCTCGTA 25317 Query 10631 GTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTGGCGGGTG 10690 | ||| ||| ||||| | || |||||| ||| | | ||| || | Sbjct 25318 GAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGAAGATCTACCTTGGAG 25377 Query 10691 AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGG 10750 || ||| ||||| || |||| |||||| || | | | |||||||| || || | Sbjct 25378 AGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGACTGGGGCCATGCTCGTG 25437 Query 10751 ACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCG 10810 |||| ||||||||||||||| | | | || |||||| | ||||||| | |||| | | Sbjct 25438 ACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCCGGACGACTTTGTCATTG 25497 Query 10811 CGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 10847 | || || || | || || || | ||||| || || Sbjct 25498 CCACTGGAGAAGCGCATTCAGTGCGAGAGTTTGTCGA 25534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612842541637200