Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq40302 196 8e-45 seq53698 154 2e-32 seq32170 113 7e-20 seq13731 104 4e-17 >seq40302 Length=2817 Score = 196 bits (216), Expect = 8e-45 Identities = 554/843 (66%), Gaps = 16/843 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || || |||||||| ||||||| | || |||||||| | || || || Sbjct 1961 CTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCATGAAGTCAAAGGGATT 2020 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||| || | ||||| || |||||| || ||| || | || Sbjct 2021 CTTGACGTTGTAGTACTTGGGCACGCCGAGCTCCACCAGCAGCCGGTCGGCGCAGTACTC 2080 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| | ||||| |||| ||| || || | || || || || || || | Sbjct 2081 AATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCGACCGGAAGGGCGTCAGT 2140 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||||| ||| || ||| || ||| | | |||||| || || || | Sbjct 2141 GAGGAACTCCTGCTCGATGCGGACGGCCTCGTTGATGATCTGCACCACCCGCTCATCGTA 2200 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 |||||| | ||| ||| ||| ||||| || ||||||||||||||||| ||||| Sbjct 2201 CGGCTT---CTTAATCAGGTGGCGAAAGAGGAGACAGGCAAAGTCGCAGTGCAGGCCCTC 2257 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 ||| || ||| | ||| ||| | | | ||||||||||| | || ||| || || Sbjct 2258 GTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCCCGGCATCAGGCCGCGCTTCTTCAG 2317 Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 |||||| ||| ||||| | ||||| || ||||| ||||||||||| || || || || Sbjct 2318 CCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAAGATGCCCTCCACGGCGGCGAAGGCGAC 2377 Query 160069 GAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG---GTCCACCTTTTGGCCCATTCAGC 160125 ||| | ||| |||| | |||| | | || | ||||| ||||||| | || Sbjct 2378 GAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCGGCCGTCCAGGCCATGGCCCACTTCGC 2437 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| |||| ||| ||||| || || |||||| || | || || || || Sbjct 2438 CTTCTTCGCGACGCAGGGCATCGTCTGGATGGCGTTGAAGA---GGTACTCGCGCTGGAC 2494 Query 160186 ---ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 || |||| || |||||| |||||||| || | ||| || || ||||| Sbjct 2495 GCGGTCGCTGATGTAGGTGTTGATCAGCAGGGAGTACATCTCCGAGTGGACGTTCTCGAT 2554 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTG-CACCTCCTGTGTGAACC 160301 ||| ||||| ||| |||||| | |||| | | || | |||||| | |||| | Sbjct 2555 GGCAATCTGGAAGCCGTAGAAGCAACGGGCCT-CGGTGACGGTCACCTCGCGGATGAAGC 2613 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | | || || |||| || | |||||| ||| || ||||| |||| ||||| | Sbjct 2614 GCTCCGCGAGGTTCTCATTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAGAACGTGGG 2673 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAG-TCTCTTTTCCCAGTGTGTCACGTCTTGGGCC 160420 |||| || || | ||||| | || || || | || |||||| | | ||| | | Sbjct 2674 AGATAAAGTGGCGCTCGTTTCGATTTAGCTCGCCGTT-CCAGTGGGCGAGGTCGCGACTC 2732 Query 160421 AAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 | || ||||| || || |||| | |||| || | |||||||| | ||||||| Sbjct 2733 AGGTCCACCTCCTCGACGGTCCAGAAGCTCGCCTCGGCCTTCTTGTACATCGTCCAGATG 2792 Query 160481 GCG 160483 || Sbjct 2793 TCG 2795 >seq53698 Length=1888 Score = 154 bits (170), Expect = 2e-32 Identities = 258/368 (70%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||||||||||||||||| |||||||| || | | | || ||| | | | ||| ||||| Sbjct 1286 CTTCGTCTTGTCCACCGTAAACTGAATCGCCTGCGCCGCCGGCTTCGTGCGCAGGTAGTA 1345 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| ||||| |||||| | ||| || | | |||||| || | | || || Sbjct 1346 CATGCCCGTCTTCAGGCCCAGTTTCCAGCCAAAGAAGTGCATCGAGGTGATCTTCGCCAT 1405 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 | | || ||||| ||||| | ||| || ||||| ||||||||||| | | | || || Sbjct 1406 GGTCGGCTCGGCAATGTGCACGTTGAGCGACTGCGACTGGTCGATGAAGGCCCCGCGGTC 1465 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 |||||||| | | ||| | |||||||| ||||||||| || |||||| | | | | | Sbjct 1466 GGCGGCCATCTCCAGAATCGCCTTCTGCGGAATCTCCCAGACGGTCTTGTAGAGGGCCTT 1525 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | ||| | || | || | | | |||| | |||||||| | |||| || | ||||| Sbjct 1526 GATGTCCTCGGGAATCTC-GGCGATGCCCTGCACCGAGCCGTGGCCGGCGATGA-TCTCA 1583 Query 204132 -TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || |||||| ||| ||||| | |||| || ||| ||||||| ||||| Sbjct 1584 TTCTTCAGCTCCTCATTCCAGATGCCGCGCTCCGTCAGGTCGAGCAGCAGGTGGTGGTTG 1643 Query 204191 ATGATCTG 204198 | || ||| Sbjct 1644 ACGACCTG 1651 >seq32170 Length=3971 Score = 113 bits (124), Expect = 7e-20 Identities = 322/490 (66%), Gaps = 10/490 (2%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| || ||||||| || ||||| | || | |||| ||| || || || Sbjct 3919 CTCGTACTTCTCGTACAGCTCCTCAAAGGCCTCGCCCCAGCAGTCCTGCAGGCCGGGGCA 3860 Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | | || |||||||| ||||| | || | | || | || |||||| ||||| Sbjct 3859 CTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATAAAGAGGTC 3800 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 | ||||| | |||| || || || ||||| | | | || || |||||| Sbjct 3799 CGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCGGTGTTCTT 3740 Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 || ||| || || || | ||||||||||||||||| || | | | ||| | | Sbjct 3739 GCGCAGGTCGAGA-AACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATGGCAAACG 3681 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || || | ||||||||| ||||||||||| ||| | | |||| | || |||| Sbjct 3680 CCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACGCGCA 3621 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCC 205418 ||||||||||||| || ||| | ||||| |||| | ||||| | ||| | || | Sbjct 3620 GCATCGGCACCAGCCCATTGCTGACGCCGTTTGTGCCGCTGATGTAGGTGCCCGCGGCGC 3561 Query 205419 TCACGTTGGAGATGGCCG----CGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC 205474 | || || || || ||||||| ||||| | |||||| ||| ||||||| Sbjct 3560 ---GGATGCAG-TGCACGTTGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCAC 3505 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCAC 205534 | | ||| ||| ||||||||| | || || || || | || |||| |||| |||| Sbjct 3504 TGCTTCAGCGTGTCGTAGATGCCCTCAATCGAGTCCTCGGAGAGCGTCAGCAGAAAGCAG 3445 Query 205535 GAAGCCAGCT 205544 || | ||||| Sbjct 3444 GAGGACAGCT 3435 >seq13731 Length=15303 Score = 104 bits (114), Expect = 4e-17 Identities = 319/491 (65%), Gaps = 2/491 (0%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||||||||| || || || || || || | ||||| || | | | |||||||| | Sbjct 558 TCTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTC 617 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | || ||||| ||| | ||| || || | || || |||| ||||||| ||| | Sbjct 618 CTGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTG 677 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || || | || ||||| | || ||||||||||||||||| | |||||||||| | Sbjct 678 GCTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTG 737 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| || || || || ||| || ||||| || || ||| ||| || | ||| Sbjct 738 CCATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCGAATGT 797 Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | || || | || | | | | || || ||||| | | || | | | | || Sbjct 798 GCTGCGGTATGGATT-CTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTC 856 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | || || |||||| |||||| | || || |||| || || | || | | Sbjct 857 ATGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACT 916 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 ||||| || || || || || | || ||| | | ||| ||| | |||||||| | | Sbjct 917 TGAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGAC 976 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 || || ||||| | || || || || || |||||||| || || || || ||||| Sbjct 977 TCATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAA 1036 Query 204317 TTGCGCACACC 204327 || | ||||| Sbjct 1037 TTCCTAACACC 1047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794293748735200