Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq280 107 1e-18 seq886 91.5 1e-13 >seq280 Length=341618 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||| || || | ||| || |||||||| | ||| ||| || || ||||| || |||| Sbjct 104655 CGCCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGG 104714 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 |||| || | || ||||| ||||| ||| ||||||| |||||||| ||||| | | Sbjct 104715 ACAAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAG 104774 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||| || || ||||| ||||| | | | ||||||| || | Sbjct 104775 GAATACCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAA 104834 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || |||||||| || | || || |||||||||||||| Sbjct 104835 CCTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| || |||||||| || ||| || || ||||| || || | ||| |||| || Sbjct 106265 CGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCA 106324 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||| || || || | ||||||||||| || ||||| | || | ||||| || Sbjct 106325 TCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTA 106384 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | || | | || || | || || |||||||| || Sbjct 106385 TCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 106444 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||||||||| |||||||| ||||| ||||||||| Sbjct 106445 GTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 106480 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| || |||||||| || ||| || || ||||| || || | ||| |||| || Sbjct 114511 CGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCA 114570 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||| || || || | ||||||||||| || ||||| | || | ||||| || Sbjct 114571 TCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTA 114630 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | || | | || || | || || |||||||| || Sbjct 114631 TCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 114690 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||||||||| |||||||| ||||| ||||||||| Sbjct 114691 GTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 114726 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||| ||| | || || ||||| || || ||||||| Sbjct 106480 GCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGA 106539 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || ||||||||||| ||| |||| |||||||| |||||||| | || Sbjct 106540 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGG 106599 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || || ||| | || | | || || | ||| || Sbjct 106600 AATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAAC 106659 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || || || || ||||| || |||||||| ||||| Sbjct 106660 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 106707 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||| ||| | || || ||||| || || ||||||| Sbjct 114726 GCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGA 114785 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || ||||||||||| ||| |||| |||||||| |||||||| | || Sbjct 114786 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGG 114845 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| || || ||| | || | | || || | ||| || Sbjct 114846 AATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAAC 114905 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || || || || ||||| || |||||||| ||||| Sbjct 114906 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 114953 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||||||| | || || ||||| || |||||||||| | Sbjct 104885 CCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGAC 104944 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | || || ||| | || ||||||||||| ||||| | || Sbjct 104945 AAAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG 105004 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || |||| || | | ||||||| || || Sbjct 105005 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACC 105064 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || | ||| || ||||| || ||||| Sbjct 105065 TCCAAGGTGATGGTTTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||||||||| ||| || ||||| || || || || | | Sbjct 105797 CCACCACGAAGACGCAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 105856 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||||| ||| | || || |||||||||||||| | ||| Sbjct 105857 AAGGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 105916 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || || ||||| | | | ||||||| || || Sbjct 105917 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACC 105976 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || |||| || || |||||||| ||||| Sbjct 105977 TCCAAGGTGATAGTTTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 106023 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||||||||| ||| || ||||| || || || || | | Sbjct 114043 CCACCACGAAGACGCAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 114102 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||||| ||| | || || |||||||||||||| | ||| Sbjct 114103 AAGGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 114162 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || || ||||| | | | ||||||| || || Sbjct 114163 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACC 114222 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || |||| || || |||||||| ||||| Sbjct 114223 TCCAAGGTGATAGTTTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 114269 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| || ||||||| || ||||||||||| |||||||||| | Sbjct 106025 CCACCACGGAGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGAC 106084 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || ||| | || ||||||||||| ||||| | || Sbjct 106085 AAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG 106144 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| || || ||||| ||| || ||| || || || | ||| | Sbjct 106145 ATACCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCGATA--GTATCGGAAGGTTCAA 106202 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| ||| || ||||| || || || ||||| || || || ||||| Sbjct 106203 CCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| || ||||||| || ||||||||||| |||||||||| | Sbjct 114271 CCACCACGGAGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGAC 114330 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || ||| | || ||||||||||| ||||| | || Sbjct 114331 AAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG 114390 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| || || ||||| ||| || ||| || || || | ||| | Sbjct 114391 ATACCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCGATA--GTATCGGAAGGTTCAA 114448 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| ||| || ||||| || || || ||||| || || || ||||| Sbjct 114449 CCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497 >seq886 Length=177178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571 |||||||| |||||||| | ||| || | ||| || || |||| || ||||| | Sbjct 132003 ATGTTACCCAAATCACCTAAATGACGATTTTCGTCGGTTGGAGCGCCATGCTCTTTGCCA 132062 Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631 ||||| ||||| |||||||||||| || ||||||||| ||||||||||||| || Sbjct 132063 GCTGGATTGAAATGGGGACCAGCCGATGTGCAGCCATTGGTGTTATCTCCAAATTCGTGC 132122 Query 42632 ATATGAAAACCGTGATAACC 42651 | ||| || || || | ||| Sbjct 132123 ACATGGAAGCCATGTTGACC 132142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347002676748110