Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq280 107 1e-18
seq886 91.5 1e-13
>seq280
Length=341618
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550
|||| || || | ||| || |||||||| | ||| ||| || || ||||| || ||||
Sbjct 104655 CGCCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGG 104714
Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610
|||| || | || ||||| ||||| ||| ||||||| |||||||| ||||| | |
Sbjct 104715 ACAAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAG 104774
Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| | ||||| || || ||||| ||||| | | | ||||||| || |
Sbjct 104775 GAATACCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAA 104834
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| ||||| || || |||||||| || | || || ||||||||||||||
Sbjct 104835 CCTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|||| || |||||||| || ||| || || ||||| || || | ||| |||| ||
Sbjct 106265 CGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCA 106324
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| ||||| || || || | ||||||||||| || ||||| | || | ||||| ||
Sbjct 106325 TCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTA 106384
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| ||||| ||| | || | | || || | || || |||||||| ||
Sbjct 106385 TCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 106444
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||||||||| |||||||| ||||| |||||||||
Sbjct 106445 GTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 106480
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|||| || |||||||| || ||| || || ||||| || || | ||| |||| ||
Sbjct 114511 CGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCA 114570
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| ||||| || || || | ||||||||||| || ||||| | || | ||||| ||
Sbjct 114571 TCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTA 114630
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| ||||| ||| | || | | || || | || || |||||||| ||
Sbjct 114631 TCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 114690
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||||||||| |||||||| ||||| |||||||||
Sbjct 114691 GTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 114726
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || |||| ||| | || || ||||| || || |||||||
Sbjct 106480 GCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGA 106539
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| |||| | || ||||||||||| ||| |||| |||||||| |||||||| | ||
Sbjct 106540 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGG 106599
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| || |||||||| || || ||| | || | | || || | ||| ||
Sbjct 106600 AATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAAC 106659
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||| ||| || || || || || ||||| || |||||||| |||||
Sbjct 106660 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 106707
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || |||| ||| | || || ||||| || || |||||||
Sbjct 114726 GCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGA 114785
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| |||| | || ||||||||||| ||| |||| |||||||| |||||||| | ||
Sbjct 114786 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGG 114845
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| || |||||||| || || ||| | || | | || || | ||| ||
Sbjct 114846 AATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAAC 114905
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||| ||| || || || || || ||||| || |||||||| |||||
Sbjct 114906 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 114953
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | |||||| |||||||| | || || ||||| || |||||||||| |
Sbjct 104885 CCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGAC 104944
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| || |||| || | || || ||| | || ||||||||||| ||||| | ||
Sbjct 104945 AAAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG 105004
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||||||||| || || |||| || | | ||||||| || ||
Sbjct 105005 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACC 105064
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || ||||| || || | ||| || ||||| || |||||
Sbjct 105065 TCCAAGGTGATGGTTTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | |||||| |||||||||| ||| || ||||| || || || || | |
Sbjct 105797 CCACCACGAAGACGCAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 105856
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| || | ||||| ||| | || || |||||||||||||| | |||
Sbjct 105857 AAGGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 105916
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||| || || || || ||||| | | | ||||||| || ||
Sbjct 105917 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACC 105976
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || ||||| || |||| || || |||||||| |||||
Sbjct 105977 TCCAAGGTGATAGTTTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 106023
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | |||||| |||||||||| ||| || ||||| || || || || | |
Sbjct 114043 CCACCACGAAGACGCAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 114102
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| || | ||||| ||| | || || |||||||||||||| | |||
Sbjct 114103 AAGGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 114162
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||| || || || || ||||| | | | ||||||| || ||
Sbjct 114163 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACC 114222
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || ||||| || |||| || || |||||||| |||||
Sbjct 114223 TCCAAGGTGATAGTTTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 114269
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | |||||| || ||||||| || ||||||||||| |||||||||| |
Sbjct 106025 CCACCACGGAGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGAC 106084
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| || | || || ||| | || ||||||||||| ||||| | ||
Sbjct 106085 AAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG 106144
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| || || ||||| ||| || ||| || || || | ||| |
Sbjct 106145 ATACCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCGATA--GTATCGGAAGGTTCAA 106202
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||| ||| || ||||| || || || ||||| || || || |||||
Sbjct 106203 CCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | |||||| || ||||||| || ||||||||||| |||||||||| |
Sbjct 114271 CCACCACGGAGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGAC 114330
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| || | || || ||| | || ||||||||||| ||||| | ||
Sbjct 114331 AAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG 114390
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| || || ||||| ||| || ||| || || || | ||| |
Sbjct 114391 ATACCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCGATA--GTATCGGAAGGTTCAA 114448
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||| ||| || ||||| || || || ||||| || || || |||||
Sbjct 114449 CCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497
>seq886
Length=177178
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571
|||||||| |||||||| | ||| || | ||| || || |||| || ||||| |
Sbjct 132003 ATGTTACCCAAATCACCTAAATGACGATTTTCGTCGGTTGGAGCGCCATGCTCTTTGCCA 132062
Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631
||||| ||||| |||||||||||| || ||||||||| ||||||||||||| ||
Sbjct 132063 GCTGGATTGAAATGGGGACCAGCCGATGTGCAGCCATTGGTGTTATCTCCAAATTCGTGC 132122
Query 42632 ATATGAAAACCGTGATAACC 42651
| ||| || || || | |||
Sbjct 132123 ACATGGAAGCCATGTTGACC 132142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347002676748110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |