Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq81708 145 8e-30 seq85787 114 1e-20 >seq81708 Length=1085 Score = 145 bits (160), Expect = 8e-30 Identities = 136/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62001 GGTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGAC 62060 ||| || ||||| | |||||| ||||||||||| |||| |||||| | ||||| || || Sbjct 250 GGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGCAC 309 Query 62061 AGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATC 62120 ||||| || ||||| ||||| |||| ||| ||||||||||| ||||| | || ||||| Sbjct 310 GGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCATC 369 Query 62121 TTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTTCAA 62173 ||| || ||||| | ||| || || |||||||| || || |||||||||| Sbjct 370 TTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAA 422 >seq85787 Length=1013 Score = 114 bits (126), Expect = 1e-20 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 61998 CTTGGTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCG 62057 || |||||||||||||| ||| || || |||||| ||| || || || || || || Sbjct 598 CTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCGAGTTGAAGCG 657 Query 62058 GACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGC 62117 |||||||| |||||||| || || |||||||| |||||||| || ||||||| | || Sbjct 658 TACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGATGTTCCATGGC 717 Query 62118 ATCTTCTAAAG--TTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTTC 62171 ||| | | || | || | ||| || || |||||||||||||| |||||||| Sbjct 718 ATC--CAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCACCTTC 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529026244600000