Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 122 1e-22
seq7596 114 2e-20
seq85186 89.7 6e-13
seq59797 89.7 6e-13
seq3737 89.7 6e-13
>seq13731
Length=15303
Score = 122 bits (134), Expect = 1e-22
Identities = 448/693 (65%), Gaps = 23/693 (3%)
Strand=Plus/Minus
Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364
||||| |||||||| |||||| | ||||| || |||||||| ||| |||||||| |
Sbjct 1626 GAGACCGGTACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATCAGCAA 1567
Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424
||| | || || || | ||| || || || ||||| | |||| | | |
Sbjct 1566 AATATTGGCACCATTAAATGCAGCAATCTATGCACTGAAATTGTCGAATATTCTGCACCT 1507
Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484
|||||| |||||| || ||| | |||||||||||| | || || ||| || ||
Sbjct 1506 GATGAGGTGGCTGTATGCAACTTAGCATCAATCGCTTTGAACATGTTTGTCACACCTGA- 1448
Query 112485 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTA 112544
||| || | |||| || ||| | ||||| || |||||||| ||| ||| |
Sbjct 1447 --AAAAACTTACGATTTCCAACGGCTCAAGGAAGTCACCAAAACTGTGACACGAAATTTG 1390
Query 112545 AACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGA 112602
|| | | | ||||| | |||| || ||| ||| || || ||||| || | |
Sbjct 1389 AATAAAATCATTGAAATAAATCACTA-CCCATTGCCCGA-GGCAAAAAAATCAAACTTTA 1332
Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCC 112662
||||||||||||| || |||| || |||||| | || || | | || ||| |||
Sbjct 1331 GACACCGTCCAATCGGGATCGGCGTACAAGGTTTTGCAGACGCTCTTATACTTATGCGCT 1272
Query 112663 ACGCATTTGATTCCGACGAAG----CGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718
| | | || ||| ||| | ||||||| | | || || || ||
Sbjct 1271 ATCCGTACGAAAGCGAACAAGCATTCCTTTTAAATCAA----CAGGTTTTCGAAACCATT 1216
Query 112719 TATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778
||| | | || | || || |||| || ||||| ||| | ||| | ||||||||
Sbjct 1215 TATTATGGTGCATTAGAAGCTAGTTGTGAATTGGCTGAGAAATACGGTACCTATGAAACT 1156
Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC 112837
| ||| || | ||||| || |||||| | || |||| ||| |||||||| || |
Sbjct 1155 TATGAAGGCTGTCCAG-TTAGCAAGGGAATTCTACAATATGACATGTGGGATAAGAAGCC 1097
Query 112838 CA---AGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894
|| |||| || ||||| | | ||||| || || || | ||| || |
Sbjct 1096 CACTGAGCT---CTGGAACTGGACAGAATTGAAGGAGAAAATTAAACAGCATGGTGTTAG 1040
Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 112954
|| || || | ||||| ||||| || || || || || |||||| |||| |||||
Sbjct 1039 GAATTCCCTCCTGCTTGCACCTATGCCCACCGCTTCAACTGCGCAAATCATGGGCAATAA 980
Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTA 112987
||| | || ||||||||||| | ||||||||
Sbjct 979 TGAGTCATTCGAACCCTACACTTCTAACATCTA 947
>seq7596
Length=30452
Score = 114 bits (126), Expect = 2e-20
Identities = 268/400 (67%), Gaps = 7/400 (2%)
Strand=Plus/Plus
Query 13597 TCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 13656
||||||||||| | || ||| | ||||| || || ||||| || || |||
Sbjct 25123 TCTATCAAGCCAGCACTTCTGAGCTTTTTGGGAAAGTACAGGAGATCCCCCAGCGAGAGA 25182
Query 13657 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 13716
|| || |||||||| || || ||||||||| |||||| || | ||| | |
Sbjct 25183 CCACTCCATTCTACCCTCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTG 25242
Query 13717 TAAAGAATTACCGCGAGTCTTACGGA---CTGTTTGCATGCTCCGGAATCCTCTTCAACC 13773
| |||||||||||||| ||| | |||||||| |||||||| |||||||
Sbjct 25243 TCGTCAATTACCGCGAGTCATACCCAAGTCTGTTTGCTGTGAATGGAATCCTATTCAACC 25302
Query 13774 ATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTA-CCGAGG-GTATCAA 13831
|||||||||| | |||| | | |||||||||| || || | |||||| || | |
Sbjct 25303 ATGAATCACCTCGTAGAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGA 25362
Query 13832 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGA 13891
| ||| || || |||| ||||| || |||| ||| | || || | ||||
Sbjct 25363 --AGATCTACCTTGGAGAGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGA 25420
Query 13892 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGC 13951
||||| || || ||||| |||||||| |||||| | ||| | || ||||| | |
Sbjct 25421 CTGGGGCCATGCTCGTGACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCC 25480
Query 13952 CGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 13991
||||| | ||| | || || || || | |||||||||
Sbjct 25481 GGACGACTTTGTCATTGCCACTGGAGAAGCGCATTCAGTG 25520
>seq85186
Length=1023
Score = 89.7 bits (98), Expect = 6e-13
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATG 112960
|||||| | |||||||||||||||||||| || ||||||| ||||| | |||||||||
Sbjct 848 CTTTTGGTTGCACCAATGCCAACAGCCTCAACGTCACAAATACTTGGATT-TAATGAATG 790
Query 112961 CTTTGAACCCTACACGACGAACATCTAT 112988
||||||||| || ||| | ||||| |||
Sbjct 789 CTTTGAACCATATACGTCAAACATTTAT 762
>seq59797
Length=1646
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAG 102164
|||| ||||||| ||| | ||||| || ||||| | |||||| | || || |
Sbjct 1442 AAACTATTCCATGCATTAAGCGCAAAGCTGACTGGGCAGTTAAGTGGATCAATGACGAGA 1501
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| | | |||| |||| |||| | |||||||| || || ||||| |||||||||
Sbjct 1502 AAGCAT-CATTTGGTGAGAGACTAGTAGCATTTGCTGCCGTAGAAGGTATTTTCTTCTCT 1560
Query 102225 GGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283
||||| || ||| | |||| |||||||||||| ||||| | ||||| ||| | ||
Sbjct 1561 GGTTCATT-TGCATCCATTTTCTGGCTCAAGAAGAGAGGTTTGATGCCTGGTTTGACATT 1619
Query 102284 CTCCAACGAGCTTATCTCTCGTGACGA 102310
||| || || | || || ||||||||
Sbjct 1620 CTCTAATGAATTAATTTCACGTGACGA 1646
>seq3737
Length=58963
Score = 89.7 bits (98), Expect = 6e-13
Identities = 271/415 (65%), Gaps = 8/415 (2%)
Strand=Plus/Minus
Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937
||||| || |||||||||||||||||||| || || | || || || || || || ||
Sbjct 33147 GATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTT 33088
Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997
|| ||||| | || || | | | | | || || |||||||| | ||
Sbjct 33087 GGTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAG 33028
Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTGCGTTGCT 16056
||| || | || | ||| | || | | || | || | | | | ||| ||| ||
Sbjct 33027 CTGATTGAGCGTGTTCTCCTGCTCCG-AGTGGCCGCCAAAGCTGCGACCACCGCG---CT 32972
Query 16057 TTC---CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113
||| | || || ||||| || |||||||||| |||||| || || | |||||| |
Sbjct 32971 TTCGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCA 32912
Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173
|||| | ||| || || || | | ||||| || ||||||||||||| ||| | |
Sbjct 32911 TGGCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCG 32852
Query 16174 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
| | ||| | ||||| || || || | ||| || ||| ||||| ||| || | |
Sbjct 32851 AGCCAGAAACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACG 32792
Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
| || || || || || || | || | ||||||| ||||||||||| ||
Sbjct 32791 TTTTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620069903202400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |