Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq13731 122 1e-22 seq7596 114 2e-20 seq85186 89.7 6e-13 seq59797 89.7 6e-13 seq3737 89.7 6e-13 >seq13731 Length=15303 Score = 122 bits (134), Expect = 1e-22 Identities = 448/693 (65%), Gaps = 23/693 (3%) Strand=Plus/Minus Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 ||||| |||||||| |||||| | ||||| || |||||||| ||| |||||||| | Sbjct 1626 GAGACCGGTACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATCAGCAA 1567 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || || || | ||| || || || ||||| | |||| | | | Sbjct 1566 AATATTGGCACCATTAAATGCAGCAATCTATGCACTGAAATTGTCGAATATTCTGCACCT 1507 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 |||||| |||||| || ||| | |||||||||||| | || || ||| || || Sbjct 1506 GATGAGGTGGCTGTATGCAACTTAGCATCAATCGCTTTGAACATGTTTGTCACACCTGA- 1448 Query 112485 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTA 112544 ||| || | |||| || ||| | ||||| || |||||||| ||| ||| | Sbjct 1447 --AAAAACTTACGATTTCCAACGGCTCAAGGAAGTCACCAAAACTGTGACACGAAATTTG 1390 Query 112545 AACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGA 112602 || | | | ||||| | |||| || ||| ||| || || ||||| || | | Sbjct 1389 AATAAAATCATTGAAATAAATCACTA-CCCATTGCCCGA-GGCAAAAAAATCAAACTTTA 1332 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCC 112662 ||||||||||||| || |||| || |||||| | || || | | || ||| ||| Sbjct 1331 GACACCGTCCAATCGGGATCGGCGTACAAGGTTTTGCAGACGCTCTTATACTTATGCGCT 1272 Query 112663 ACGCATTTGATTCCGACGAAG----CGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 | | | || ||| ||| | ||||||| | | || || || || Sbjct 1271 ATCCGTACGAAAGCGAACAAGCATTCCTTTTAAATCAA----CAGGTTTTCGAAACCATT 1216 Query 112719 TATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778 ||| | | || | || || |||| || ||||| ||| | ||| | |||||||| Sbjct 1215 TATTATGGTGCATTAGAAGCTAGTTGTGAATTGGCTGAGAAATACGGTACCTATGAAACT 1156 Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC 112837 | ||| || | ||||| || |||||| | || |||| ||| |||||||| || | Sbjct 1155 TATGAAGGCTGTCCAG-TTAGCAAGGGAATTCTACAATATGACATGTGGGATAAGAAGCC 1097 Query 112838 CA---AGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894 || |||| || ||||| | | ||||| || || || | ||| || | Sbjct 1096 CACTGAGCT---CTGGAACTGGACAGAATTGAAGGAGAAAATTAAACAGCATGGTGTTAG 1040 Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 112954 || || || | ||||| ||||| || || || || || |||||| |||| ||||| Sbjct 1039 GAATTCCCTCCTGCTTGCACCTATGCCCACCGCTTCAACTGCGCAAATCATGGGCAATAA 980 Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTA 112987 ||| | || ||||||||||| | |||||||| Sbjct 979 TGAGTCATTCGAACCCTACACTTCTAACATCTA 947 >seq7596 Length=30452 Score = 114 bits (126), Expect = 2e-20 Identities = 268/400 (67%), Gaps = 7/400 (2%) Strand=Plus/Plus Query 13597 TCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 13656 ||||||||||| | || ||| | ||||| || || ||||| || || ||| Sbjct 25123 TCTATCAAGCCAGCACTTCTGAGCTTTTTGGGAAAGTACAGGAGATCCCCCAGCGAGAGA 25182 Query 13657 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 13716 || || |||||||| || || ||||||||| |||||| || | ||| | | Sbjct 25183 CCACTCCATTCTACCCTCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTG 25242 Query 13717 TAAAGAATTACCGCGAGTCTTACGGA---CTGTTTGCATGCTCCGGAATCCTCTTCAACC 13773 | |||||||||||||| ||| | |||||||| |||||||| ||||||| Sbjct 25243 TCGTCAATTACCGCGAGTCATACCCAAGTCTGTTTGCTGTGAATGGAATCCTATTCAACC 25302 Query 13774 ATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTA-CCGAGG-GTATCAA 13831 |||||||||| | |||| | | |||||||||| || || | |||||| || | | Sbjct 25303 ATGAATCACCTCGTAGAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGA 25362 Query 13832 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGA 13891 | ||| || || |||| ||||| || |||| ||| | || || | |||| Sbjct 25363 --AGATCTACCTTGGAGAGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGA 25420 Query 13892 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGC 13951 ||||| || || ||||| |||||||| |||||| | ||| | || ||||| | | Sbjct 25421 CTGGGGCCATGCTCGTGACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCC 25480 Query 13952 CGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 13991 ||||| | ||| | || || || || | ||||||||| Sbjct 25481 GGACGACTTTGTCATTGCCACTGGAGAAGCGCATTCAGTG 25520 >seq85186 Length=1023 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATG 112960 |||||| | |||||||||||||||||||| || ||||||| ||||| | ||||||||| Sbjct 848 CTTTTGGTTGCACCAATGCCAACAGCCTCAACGTCACAAATACTTGGATT-TAATGAATG 790 Query 112961 CTTTGAACCCTACACGACGAACATCTAT 112988 ||||||||| || ||| | ||||| ||| Sbjct 789 CTTTGAACCATATACGTCAAACATTTAT 762 >seq59797 Length=1646 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAG 102164 |||| ||||||| ||| | ||||| || ||||| | |||||| | || || | Sbjct 1442 AAACTATTCCATGCATTAAGCGCAAAGCTGACTGGGCAGTTAAGTGGATCAATGACGAGA 1501 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || | | |||| |||| |||| | |||||||| || || ||||| ||||||||| Sbjct 1502 AAGCAT-CATTTGGTGAGAGACTAGTAGCATTTGCTGCCGTAGAAGGTATTTTCTTCTCT 1560 Query 102225 GGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 ||||| || ||| | |||| |||||||||||| ||||| | ||||| ||| | || Sbjct 1561 GGTTCATT-TGCATCCATTTTCTGGCTCAAGAAGAGAGGTTTGATGCCTGGTTTGACATT 1619 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGA 102310 ||| || || | || || |||||||| Sbjct 1620 CTCTAATGAATTAATTTCACGTGACGA 1646 >seq3737 Length=58963 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/415 (65%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| || |||||||||||||||||||| || || | || || || || || || || Sbjct 33147 GATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTT 33088 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997 || ||||| | || || | | | | | || || |||||||| | || Sbjct 33087 GGTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAG 33028 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTGCGTTGCT 16056 ||| || | || | ||| | || | | || | || | | | | ||| ||| || Sbjct 33027 CTGATTGAGCGTGTTCTCCTGCTCCG-AGTGGCCGCCAAAGCTGCGACCACCGCG---CT 32972 Query 16057 TTC---CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113 ||| | || || ||||| || |||||||||| |||||| || || | |||||| | Sbjct 32971 TTCGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCA 32912 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 |||| | ||| || || || | | ||||| || ||||||||||||| ||| | | Sbjct 32911 TGGCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCG 32852 Query 16174 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | | ||| | ||||| || || || | ||| || ||| ||||| ||| || | | Sbjct 32851 AGCCAGAAACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACG 32792 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 | || || || || || || | || | ||||||| ||||||||||| || Sbjct 32791 TTTTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620069903202400