Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3737 116 4e-21 seq13731 109 6e-19 >seq3737 Length=58963 Score = 116 bits (128), Expect = 4e-21 Identities = 334/507 (66%), Gaps = 10/507 (2%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || || || ||||||||||| ||||| || | || ||||| || || ||||| Sbjct 33146 ATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTTG 33087 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGC 11616 || ||||||| || || | | | ||| ||| |||||||| || ||| ||| Sbjct 33086 GTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAGC 33027 Query 11617 TGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC----ACCTGCCGAACGCTT 11672 || |||| ||| | || |||| || || | || | | ||| ||| ||||| Sbjct 33026 TGATTGAGCGTGTTCTCCTGCTCCGAGT-GGCCGCCAAAGCTGCGACCA-CCG--CGCTT 32971 Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 |||||| |||||||| || || ||||| | ||| ||||| ||| || ||| Sbjct 32970 TCGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCAT 32911 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 | || | ||||| || || | | || || || || |||||||| | || | | Sbjct 32910 GGCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGA 32851 Query 11793 GGCAGAACACTGAA-TGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | ||||| |||||| |||| || || || | || ||||| ||||| || || | | Sbjct 32850 GCCAGAA-ACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACG 32792 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTC 11911 | || || || ||||||| |||| || | ||| || ||| ||||||||||| | Sbjct 32791 TTTTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACCCAGTT 32732 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971 || || || ||| ||||| ||||||| || | |||| || |||| ||||| Sbjct 32731 CAGTATACCGAGAAGGGTTCTTCAGGAAGTTGACGAACTCCATAATTTCCAATTTGGCTT 32672 Query 11972 AGTCGATACCCTCAACATCGGTGAAAC 11998 ||| ||| | ||||| |||||| Sbjct 32671 CCTCGCAACCAGCGACATCACTGAAAC 32645 >seq13731 Length=15303 Score = 109 bits (120), Expect = 6e-19 Identities = 284/423 (67%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || ||||| ||||| || ||||| | || | ||| || |||| |||||| Sbjct 608 TAGTACATTCCTGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTG 667 Query 109474 GAA-AGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531 | ||| | | |||| | | | | ||| | ||| || || ||||||||| | Sbjct 668 CCATAGTTTGG--CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTC 725 Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA--TTTCCCAGACAGTCTTGTA 109589 | ||||| || ||||| | || | | |||| | | ||||||| ||||| ||||| Sbjct 726 CCCGATCTGCTGCCATTTTAAT--TGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTA 783 Query 109590 CAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCT--TC 109647 || || || | | || ||| | ||| ||| || ||||||| | || | Sbjct 784 CAGATCGCGAATGTGCTGCGGTATGGATTCTATGCCTTGTATGGAGCCAC--GGCTAGTA 841 Query 109648 ACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAACAAG 109706 | || || ||||| || | ||| | ||| | || |||||||| || ||| Sbjct 842 ATAATTTTATTTTTCATGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAA- 900 Query 109707 ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGT 109766 ||| | || || || |||||| |||| ||| ||| || ||||||||||| || Sbjct 901 ATGATGATTTACAACTTGAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGT 960 Query 109767 GTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGG 109826 |||||||||||| ||||||| ||||| | |||||| ||||| ||||| |||||||| || Sbjct 961 GTAGGGTTCGAATGACTCATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGG 1020 Query 109827 AGC 109829 || Sbjct 1021 TGC 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588337918126000