Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq7596 118 1e-21
seq40302 105 8e-18
seq85186 89.7 6e-13
>seq7596
Length=30452
Score = 118 bits (130), Expect = 1e-21
Identities = 271/401 (68%), Gaps = 9/401 (2%)
Strand=Plus/Plus
Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963
||||||||||| | || ||| | ||||| || || ||||| || || |||
Sbjct 25123 TCTATCAAGCCAGCACTTCTGAGCTTTTTGGGAAAGTACAGGAGATCCCCCAGCGAGAGA 25182
Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023
|| || |||||||| || || ||||||||| |||||| || | ||| | |
Sbjct 25183 CCACTCCATTCTACCCTCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTG 25242
Query 7024 TCAAAAATTACCGCGAGTCTTACGGA---CTGTTTGC-GTGCTCCGGAATCCTCTTCAAC 7079
|| |||||||||||||| ||| | |||||||| ||| |||||||| ||||||
Sbjct 25243 TCGTCAATTACCGCGAGTCATACCCAAGTCTGTTTGCTGTGAAT-GGAATCCTATTCAAC 25301
Query 7080 CATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC-GAGG-GTATCA 7137
||||||||||| | |||| | | ||||| || | || || ||| |||| || |
Sbjct 25302 CATGAATCACCTCGTAGAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCG 25361
Query 7138 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 7197
|| | || || || |||| ||||| || |||| ||| | || || | |||
Sbjct 25362 AAGA--TCTACCTTGGAGAGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAG 25419
Query 7198 ATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAG 7257
| ||||| || || ||||| ||||||||||||||| | ||| | || ||||| |
Sbjct 25420 ACTGGGGCCATGCTCGTGACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACC 25479
Query 7258 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 7298
| ||||| | ||| | || || || || | |||||||||
Sbjct 25480 CGGACGACTTTGTCATTGCCACTGGAGAAGCGCATTCAGTG 25520
>seq40302
Length=2817
Score = 105 bits (116), Expect = 8e-18
Identities = 354/533 (66%), Gaps = 21/533 (4%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
|| || || || |||||||||||||| |||||||| || || ||||| || | |||||
Sbjct 1947 TACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCATG 2006
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103
|||||||| |||||||| |||| | | | || |||| || | | || || |
Sbjct 2007 AAGTCAAAGGGATTCTTGACGTTGTAGTACTTGG--GCACGCCGAGCTCCACCAGCAGCC 2064
Query 117104 GATCCGACACA-TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTA 117162
| || | | || |||||||||||| ||||||| ||| |||||| || |||||
Sbjct 2065 GGTCGG-CGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCG 2123
Query 117163 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GC 117221
|| || ||||| || |||| | | ||| || || ||||| || | ||| ||
Sbjct 2124 ACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCTCGTTGATGATCTGC 2183
Query 117222 GTGGATAGTT--TCGGTAGTGGGTCTATTACGCAAAGTCTTGAA-GAGCTCCACGGCAAA 117278
| | ||| || | ||| || || || ||| ||| ||||||
Sbjct 2184 ACCACCCGCTCATCG-TACGGCTTCT--TAATCAG-GTGGCGAAAGAGGAGACAGGCAAA 2239
Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338
|| ||| || ||||| || ||| || || ||||| |||| ||||| |||||
Sbjct 2240 GTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCCCGGCAT 2299
Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGC--GCAGAATGACCCGGAGAAGAAGATACCC 117396
|| || |||||||||| |||| | || || ||| || || ||| ||||||||| |||
Sbjct 2300 CAGGCCGCGCTTCTTCAGCCAAAAGAT-GCTGGCA-AAGGAGCCGCTGAAGAAGATGCCC 2357
Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTT--GTGTCAAAC 117453
||||| || || || | ||||||||||| |||| ||| ||| | | | |
Sbjct 2358 TCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCGGCCGTC 2417
Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506
|| ||| ||||| |||||||||||| | | || || | || ||||||||
Sbjct 2418 CAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGC 2470
>seq85186
Length=1023
Score = 89.7 bits (98), Expect = 6e-13
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGG 105992
||| ||||| | ||| || |||||||||||||||||| | ||||| ||||||| || |
Sbjct 762 ATAAATGTTTGACGTATATGGTTCAAAGCATTCATTA-AATCCAAGTATTTGTGACGTTG 820
Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAG 106020
||||||||||||||||||| | ||||||
Sbjct 821 AGGCTGTTGGCATTGGTGCAACCAAAAG 848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589341629550800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |