Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7596 118 1e-21 seq40302 105 8e-18 seq85186 89.7 6e-13 >seq7596 Length=30452 Score = 118 bits (130), Expect = 1e-21 Identities = 271/401 (68%), Gaps = 9/401 (2%) Strand=Plus/Plus Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963 ||||||||||| | || ||| | ||||| || || ||||| || || ||| Sbjct 25123 TCTATCAAGCCAGCACTTCTGAGCTTTTTGGGAAAGTACAGGAGATCCCCCAGCGAGAGA 25182 Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023 || || |||||||| || || ||||||||| |||||| || | ||| | | Sbjct 25183 CCACTCCATTCTACCCTCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTG 25242 Query 7024 TCAAAAATTACCGCGAGTCTTACGGA---CTGTTTGC-GTGCTCCGGAATCCTCTTCAAC 7079 || |||||||||||||| ||| | |||||||| ||| |||||||| |||||| Sbjct 25243 TCGTCAATTACCGCGAGTCATACCCAAGTCTGTTTGCTGTGAAT-GGAATCCTATTCAAC 25301 Query 7080 CATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC-GAGG-GTATCA 7137 ||||||||||| | |||| | | ||||| || | || || ||| |||| || | Sbjct 25302 CATGAATCACCTCGTAGAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCG 25361 Query 7138 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 7197 || | || || || |||| ||||| || |||| ||| | || || | ||| Sbjct 25362 AAGA--TCTACCTTGGAGAGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAG 25419 Query 7198 ATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAG 7257 | ||||| || || ||||| ||||||||||||||| | ||| | || ||||| | Sbjct 25420 ACTGGGGCCATGCTCGTGACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACC 25479 Query 7258 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 7298 | ||||| | ||| | || || || || | ||||||||| Sbjct 25480 CGGACGACTTTGTCATTGCCACTGGAGAAGCGCATTCAGTG 25520 >seq40302 Length=2817 Score = 105 bits (116), Expect = 8e-18 Identities = 354/533 (66%), Gaps = 21/533 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||||||||| |||||||| || || ||||| || | ||||| Sbjct 1947 TACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCATG 2006 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||||||| |||||||| |||| | | | || |||| || | | || || | Sbjct 2007 AAGTCAAAGGGATTCTTGACGTTGTAGTACTTGG--GCACGCCGAGCTCCACCAGCAGCC 2064 Query 117104 GATCCGACACA-TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTA 117162 | || | | || |||||||||||| ||||||| ||| |||||| || ||||| Sbjct 2065 GGTCGG-CGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCG 2123 Query 117163 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GC 117221 || || ||||| || |||| | | ||| || || ||||| || | ||| || Sbjct 2124 ACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCTCGTTGATGATCTGC 2183 Query 117222 GTGGATAGTT--TCGGTAGTGGGTCTATTACGCAAAGTCTTGAA-GAGCTCCACGGCAAA 117278 | | ||| || | ||| || || || ||| ||| |||||| Sbjct 2184 ACCACCCGCTCATCG-TACGGCTTCT--TAATCAG-GTGGCGAAAGAGGAGACAGGCAAA 2239 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || ||| || ||||| || ||| || || ||||| |||| ||||| ||||| Sbjct 2240 GTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCCCGGCAT 2299 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGC--GCAGAATGACCCGGAGAAGAAGATACCC 117396 || || |||||||||| |||| | || || ||| || || ||| ||||||||| ||| Sbjct 2300 CAGGCCGCGCTTCTTCAGCCAAAAGAT-GCTGGCA-AAGGAGCCGCTGAAGAAGATGCCC 2357 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTT--GTGTCAAAC 117453 ||||| || || || | ||||||||||| |||| ||| ||| | | | | Sbjct 2358 TCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCGGCCGTC 2417 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || ||| ||||| |||||||||||| | | || || | || |||||||| Sbjct 2418 CAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGC 2470 >seq85186 Length=1023 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGG 105992 ||| ||||| | ||| || |||||||||||||||||| | ||||| ||||||| || | Sbjct 762 ATAAATGTTTGACGTATATGGTTCAAAGCATTCATTA-AATCCAAGTATTTGTGACGTTG 820 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAG 106020 ||||||||||||||||||| | |||||| Sbjct 821 AGGCTGTTGGCATTGGTGCAACCAAAAG 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589341629550800