Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq52999 688 0.0 >seq52999 Length=1923 Score = 688 bits (762), Expect = 0.0 Identities = 1173/1683 (70%), Gaps = 71/1683 (4%) Strand=Plus/Plus Query 32226 GTTCAGCGATGAGCAGATCGAGAAGCTCAACGACGCGTTCCTCGAATCGATCTTCGACTA 32285 ||||||||| || ||||| |||||||| | || | |||| || ||||| |||| ||| Sbjct 290 GTTCAGCGACGAACAGATTGAGAAGCTGCAGGAGGTTTTCCACGGCTCGATGTTCGGCTA 349 Query 32286 TCAGCGCAACTGGTATCGCGCCGGCTTCAAGGAACGGATCCGCAACGTCCTGAAGAGCCG 32345 |||||| | |||| ||||| ||| | |||||||| | |||||| || Sbjct 350 CCAGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCG 409 Query 32346 GCAGATCGGCGCGACCTGGTACTTCGCGCGCGAGGCGTTGCTCGACGCGCTGAACACAGG 32405 ||||| || || |||| | || || ||||||||| || |||| ||||||| ||| || Sbjct 410 CCAGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGG 469 Query 32406 CCGCAATCAAATCTTCCTGTCGGCCAGCAAGGCACAGGCGCACGTGTTCCGCCAGTACAT 32465 |||||||| || ||||| || ||||| ||||| ||||||||||| ||| |||||||| Sbjct 470 GCGCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACAT 529 Query 32466 CGTGCAGTTCGCGAAAGACGCGGTCGACGTCGAGCTGAAGGGCGACCCGATCGTGCTGCC 32525 | | | || || || ||| ||||| || ||||||||||||||||| ||| Sbjct 530 CATTGAATTTGCCCGCGA---GGTGGACGTAGACCTGAAGGGCGACCCGATGACGCTCAG 586 Query 32526 GAACGGTGCGACGCTGTACTTCCTCGGCACCAACGCGCGCACTGCGCAGAGCTACCACGG 32585 ||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct 587 TAACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGG 646 Query 32586 CAACCTGTATTTCGACGAGTACTTCTGGGTGCCGCGCTTCCAGGAGCTGCGCAAGGTCGC 32645 ||| ||||| | || || || |||||| | ||| || ||||| |||| || || || Sbjct 647 CAATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGC 706 Query 32646 CTCCGGCATGGCGATTCACGACCAGTGGCGGCAGACGTATTTCTCGACGCCGTCGAGCCT 32705 |||||||||||| | ||| | ||||||| | || || || || || ||||| ||||| Sbjct 707 GTCCGGCATGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCT 766 Query 32706 CGCGCACGACGCTTATCCGTTCTGGTCGGGCAAGCTGTTCAACCGTGGCCGACCGAAAGA 32765 | ||||| ||| |||||||||||||| || || ||||||| ||||| | |||| Sbjct 767 CACGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGC 826 Query 32766 TCAGCACGTATCGATCGACATTTCGCACGCGGCGCTGGCCGCGGGCCGTTCGTGTCAGGA 32825 | | | || || ||| | || | | |||||||| || || || | || Sbjct 827 TGACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGA 886 Query 32826 CGGCCAGTGGCGCCAGATCGTCACGGTCGAGGACGCCGTGCGCGGCGGTTGCAACAGCGG 32885 |||||||| |||||||||||||| || || || || ||||||||||| || || Sbjct 887 CGGCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGAC----- 941 Query 32886 GGCGCGGCCGCTCTTCAATCTCGACCGGCTACGACTGGAATACAGCCCCGAGGAATACGC 32945 || || | || || | ||| || | |||||||| ||||| ||| Sbjct 942 ----------CTGTTTGACCTGGAGCAGCTGCGCACGCGCTACAGCCCGGAGGATTACCA 991 Query 32946 GAACCTGCTGCTGTGCCAGTTCATCGACGATTCGCTGTCGGTTTTCCCGCTGACGGTGTT 33005 |||||||||| ||||| || || |||||| | |||||| |||| |||| | || | Sbjct 992 GAACCTGCTGATGTGCGTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCT 1051 Query 33006 GCAGCCGTGCATGGTCGATACCTGGGAGGTGTGGGACGACTTCAAGCCACTGTACCTGCG 33065 |||| |||||||| || | |||||| || ||| |||||| || | ||| ||||| Sbjct 1052 GCAGAAATGCATGGTGGACAGCTGGGAAGTCTGGACCGACTTTGAGGCGCTGGCGCTGCG 1111 Query 33066 CCCGTTCGGCGACGAGGAGGTCTGGATCGGCTACGACCC---------GTCGCATACGGG 33116 |||||||||| | || || ||||||||||||||||| |||| | || Sbjct 1112 CCCGTTCGGCTGGAAAGAAGTGTGGATCGGCTACGACCCCGCGAAGGGAACGCAGAACGG 1171 Query 33117 CGACAGCGCCGGCTGCGTGGTGATTGCGCCGCC-GAAGCGTCCGGGCGGGAAGTTCCGCG 33175 |||||||||||| |||||||| || || ||||| | | | |||||||| ||||||||| Sbjct 1172 CGACAGCGCCGGATGCGTGGTCATGGCACCGCCTGCCGTG-CCGGGCGGCAAGTTCCGCA 1230 Query 33176 TGCTCGAGCGGTTCCAGTGGCACGGTTTGGACTTCGAGGCGCAGGCCG-CGCAAATCGAA 33234 | || ||||| |||||||| ||| |||||||| ||||||||| | ||| ||| Sbjct 1231 TCCTTGAGCGTCACCAGTGGCGCGGGATGGACTTCCGGGCGCAGGCTGACGC-CATCAGG 1289 Query 33235 GCGCTGACGCGGCGCTATCGCGTGACCTACATCGGCATTGACACGACCGGGATCGGGCAG 33294 ||||||||| || ||| ||| ||||| |||||||| ||| | ||||| |||||| Sbjct 1290 ACGCTGACGCAGCAGTATAACGTCACCTATATCGGCATCGACTCCACCGGCGTCGGGCTT 1349 Query 33295 GGCGTGTATCAGCTCGTCACGAAG--TTTTTCCCGGCCGCGACGCCGTTCCACTACTCGG 33352 ||||| || || |||| ||| || |||||| | || | ||| ||| Sbjct 1350 GGCGTATACGAGAATGTCA--AAGCCTTCTTCCCGCAGGTGAAGGAGTTTGTCTATAACC 1407 Query 33353 TGGAAATCAAGACCGCGCTGGTGATGAAGGCGCAGAACGTGATCCGCAAGGGTCGGCTCG 33412 | | | || | ||| |||||| ||||||| | || ||| || || ||||| | Sbjct 1408 CGAACGTGAAAAACGCCCTGGTGCTGAAGGCTTACGACACCATCGCCAGCGGGCGGCTGG 1467 Query 33413 AGTTCGACGCCGGCTGGAACGATCTCGCCGCGTCATTCATGGCGATCAAGAAAACCATCA 33472 |||| |||||| || ||| |||| |||||| ||| | ||| ||| ||| || Sbjct 1468 AGTTTGACGCCAGCCACCTCGACATCGCGCAGTCATTTATGTCTATCCGCAAAGCCACCA 1527 Query 33473 CGCCCAGCGGCCTGCAGGTC--ACGTACAAGGCGAGCCGCTCGGAAGAAGCGAGCCACGG 33530 || |||||||| | ||| || || | | |||||| || |||| |||||||| Sbjct 1528 CGGCCAGCGGCAACC--GTCCGACCTATGAAACCAGCCGCAGCGAGGAAGTCAGCCACGG 1585 Query 33531 CGATCTCGCCTGGGCGTGCATGCACGCGCTGGCGAACGAGCCGCTCGAAGG---GGCGAC 33587 |||| | ||||||||| ||||||||||||||| ||||||||||| | || |||| | Sbjct 1586 CGATTTAGCCTGGGCGACCATGCACGCGCTGGCAAACGAGCCGCTGCAGGGACAGGCGGC 1645 Query 33588 TGCCACCAATACCGGATTCATGGAGATTTTCTGATGTCACGCAAGTATCGACGC-GGCGC 33646 ||| | | | ||| ||||||||| |||||| |||| |||| || | Sbjct 1646 ACACACGCAGAAC--ATT-GTGGAGATTTACTGATG---AGCAA------ACGCAGGAAC 1693 Query 33647 CGGGCGCCGCGCACACGATCGCACCG-AGCCGGTGGCCGACATG--CAGTCGGCCTCGGC 33703 || | |||| | || | || ||| |||| || ||||| ||| ||| ||| Sbjct 1694 CGCAC-CCGCACGCA-GCCCGTGCCGCAGCC---GGATAACATGACCAG-CGG----GGC 1743 Query 33704 CACGCGCGCGGAAGTGTTCTCGTTCGGCGACCCGATCGCCGTGCTGGATCGGCGCGAGCT 33763 || |||| | ||| | || |||||||||||| | |||||||| || ||||| || Sbjct 1744 AGCG---TCGGAGGCGTTTACCTTTGGCGACCCGATCCCGGTGCTGGACCGCCGCGAACT 1800 Query 33764 GCTCGACTACGTCGAGTGCATGCGCATGGGGAACTGGTACGAGCCGCCGCTGCCGCTCGA 33823 ||| |||||||| |||||| | || | |||||| || || || || | || Sbjct 1801 GCTGGACTACGTGGAGTGCGTTATCAATGATCGCTGGTATGAACCACCCGTGAGCGTTGA 1860 Query 33824 CGGGCTCGCGCGTTCGTTCCGGGCCGCGCCGCATCACAGCTCGGCCATCTACGTGAAGCG 33883 |||||| ||||| ||||||| ||||| |||||||||||| ||||| ||||||| | Sbjct 1861 CGGGCTGGCGCGCACGTTCCGCGCCGCCGTGCATCACAGCTCACCCATCAGCGTGAAGTG 1920 Query 33884 CAA 33886 ||| Sbjct 1921 CAA 1923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118911089874920