Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_015265.1
Length=37236
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 688 0.0
>seq52999
Length=1923
Score = 688 bits (762), Expect = 0.0
Identities = 1173/1683 (70%), Gaps = 71/1683 (4%)
Strand=Plus/Plus
Query 32226 GTTCAGCGATGAGCAGATCGAGAAGCTCAACGACGCGTTCCTCGAATCGATCTTCGACTA 32285
||||||||| || ||||| |||||||| | || | |||| || ||||| |||| |||
Sbjct 290 GTTCAGCGACGAACAGATTGAGAAGCTGCAGGAGGTTTTCCACGGCTCGATGTTCGGCTA 349
Query 32286 TCAGCGCAACTGGTATCGCGCCGGCTTCAAGGAACGGATCCGCAACGTCCTGAAGAGCCG 32345
|||||| | |||| ||||| ||| | |||||||| | |||||| ||
Sbjct 350 CCAGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCG 409
Query 32346 GCAGATCGGCGCGACCTGGTACTTCGCGCGCGAGGCGTTGCTCGACGCGCTGAACACAGG 32405
||||| || || |||| | || || ||||||||| || |||| ||||||| ||| ||
Sbjct 410 CCAGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGG 469
Query 32406 CCGCAATCAAATCTTCCTGTCGGCCAGCAAGGCACAGGCGCACGTGTTCCGCCAGTACAT 32465
|||||||| || ||||| || ||||| ||||| ||||||||||| ||| ||||||||
Sbjct 470 GCGCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACAT 529
Query 32466 CGTGCAGTTCGCGAAAGACGCGGTCGACGTCGAGCTGAAGGGCGACCCGATCGTGCTGCC 32525
| | | || || || ||| ||||| || ||||||||||||||||| |||
Sbjct 530 CATTGAATTTGCCCGCGA---GGTGGACGTAGACCTGAAGGGCGACCCGATGACGCTCAG 586
Query 32526 GAACGGTGCGACGCTGTACTTCCTCGGCACCAACGCGCGCACTGCGCAGAGCTACCACGG 32585
||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 587 TAACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGG 646
Query 32586 CAACCTGTATTTCGACGAGTACTTCTGGGTGCCGCGCTTCCAGGAGCTGCGCAAGGTCGC 32645
||| ||||| | || || || |||||| | ||| || ||||| |||| || || ||
Sbjct 647 CAATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGC 706
Query 32646 CTCCGGCATGGCGATTCACGACCAGTGGCGGCAGACGTATTTCTCGACGCCGTCGAGCCT 32705
|||||||||||| | ||| | ||||||| | || || || || || ||||| |||||
Sbjct 707 GTCCGGCATGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCT 766
Query 32706 CGCGCACGACGCTTATCCGTTCTGGTCGGGCAAGCTGTTCAACCGTGGCCGACCGAAAGA 32765
| ||||| ||| |||||||||||||| || || ||||||| ||||| | ||||
Sbjct 767 CACGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGC 826
Query 32766 TCAGCACGTATCGATCGACATTTCGCACGCGGCGCTGGCCGCGGGCCGTTCGTGTCAGGA 32825
| | | || || ||| | || | | |||||||| || || || | ||
Sbjct 827 TGACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGA 886
Query 32826 CGGCCAGTGGCGCCAGATCGTCACGGTCGAGGACGCCGTGCGCGGCGGTTGCAACAGCGG 32885
|||||||| |||||||||||||| || || || || ||||||||||| || ||
Sbjct 887 CGGCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGAC----- 941
Query 32886 GGCGCGGCCGCTCTTCAATCTCGACCGGCTACGACTGGAATACAGCCCCGAGGAATACGC 32945
|| || | || || | ||| || | |||||||| ||||| |||
Sbjct 942 ----------CTGTTTGACCTGGAGCAGCTGCGCACGCGCTACAGCCCGGAGGATTACCA 991
Query 32946 GAACCTGCTGCTGTGCCAGTTCATCGACGATTCGCTGTCGGTTTTCCCGCTGACGGTGTT 33005
|||||||||| ||||| || || |||||| | |||||| |||| |||| | || |
Sbjct 992 GAACCTGCTGATGTGCGTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCT 1051
Query 33006 GCAGCCGTGCATGGTCGATACCTGGGAGGTGTGGGACGACTTCAAGCCACTGTACCTGCG 33065
|||| |||||||| || | |||||| || ||| |||||| || | ||| |||||
Sbjct 1052 GCAGAAATGCATGGTGGACAGCTGGGAAGTCTGGACCGACTTTGAGGCGCTGGCGCTGCG 1111
Query 33066 CCCGTTCGGCGACGAGGAGGTCTGGATCGGCTACGACCC---------GTCGCATACGGG 33116
|||||||||| | || || ||||||||||||||||| |||| | ||
Sbjct 1112 CCCGTTCGGCTGGAAAGAAGTGTGGATCGGCTACGACCCCGCGAAGGGAACGCAGAACGG 1171
Query 33117 CGACAGCGCCGGCTGCGTGGTGATTGCGCCGCC-GAAGCGTCCGGGCGGGAAGTTCCGCG 33175
|||||||||||| |||||||| || || ||||| | | | |||||||| |||||||||
Sbjct 1172 CGACAGCGCCGGATGCGTGGTCATGGCACCGCCTGCCGTG-CCGGGCGGCAAGTTCCGCA 1230
Query 33176 TGCTCGAGCGGTTCCAGTGGCACGGTTTGGACTTCGAGGCGCAGGCCG-CGCAAATCGAA 33234
| || ||||| |||||||| ||| |||||||| ||||||||| | ||| |||
Sbjct 1231 TCCTTGAGCGTCACCAGTGGCGCGGGATGGACTTCCGGGCGCAGGCTGACGC-CATCAGG 1289
Query 33235 GCGCTGACGCGGCGCTATCGCGTGACCTACATCGGCATTGACACGACCGGGATCGGGCAG 33294
||||||||| || ||| ||| ||||| |||||||| ||| | ||||| ||||||
Sbjct 1290 ACGCTGACGCAGCAGTATAACGTCACCTATATCGGCATCGACTCCACCGGCGTCGGGCTT 1349
Query 33295 GGCGTGTATCAGCTCGTCACGAAG--TTTTTCCCGGCCGCGACGCCGTTCCACTACTCGG 33352
||||| || || |||| ||| || |||||| | || | ||| |||
Sbjct 1350 GGCGTATACGAGAATGTCA--AAGCCTTCTTCCCGCAGGTGAAGGAGTTTGTCTATAACC 1407
Query 33353 TGGAAATCAAGACCGCGCTGGTGATGAAGGCGCAGAACGTGATCCGCAAGGGTCGGCTCG 33412
| | | || | ||| |||||| ||||||| | || ||| || || ||||| |
Sbjct 1408 CGAACGTGAAAAACGCCCTGGTGCTGAAGGCTTACGACACCATCGCCAGCGGGCGGCTGG 1467
Query 33413 AGTTCGACGCCGGCTGGAACGATCTCGCCGCGTCATTCATGGCGATCAAGAAAACCATCA 33472
|||| |||||| || ||| |||| |||||| ||| | ||| ||| ||| ||
Sbjct 1468 AGTTTGACGCCAGCCACCTCGACATCGCGCAGTCATTTATGTCTATCCGCAAAGCCACCA 1527
Query 33473 CGCCCAGCGGCCTGCAGGTC--ACGTACAAGGCGAGCCGCTCGGAAGAAGCGAGCCACGG 33530
|| |||||||| | ||| || || | | |||||| || |||| ||||||||
Sbjct 1528 CGGCCAGCGGCAACC--GTCCGACCTATGAAACCAGCCGCAGCGAGGAAGTCAGCCACGG 1585
Query 33531 CGATCTCGCCTGGGCGTGCATGCACGCGCTGGCGAACGAGCCGCTCGAAGG---GGCGAC 33587
|||| | ||||||||| ||||||||||||||| ||||||||||| | || |||| |
Sbjct 1586 CGATTTAGCCTGGGCGACCATGCACGCGCTGGCAAACGAGCCGCTGCAGGGACAGGCGGC 1645
Query 33588 TGCCACCAATACCGGATTCATGGAGATTTTCTGATGTCACGCAAGTATCGACGC-GGCGC 33646
||| | | | ||| ||||||||| |||||| |||| |||| || |
Sbjct 1646 ACACACGCAGAAC--ATT-GTGGAGATTTACTGATG---AGCAA------ACGCAGGAAC 1693
Query 33647 CGGGCGCCGCGCACACGATCGCACCG-AGCCGGTGGCCGACATG--CAGTCGGCCTCGGC 33703
|| | |||| | || | || ||| |||| || ||||| ||| ||| |||
Sbjct 1694 CGCAC-CCGCACGCA-GCCCGTGCCGCAGCC---GGATAACATGACCAG-CGG----GGC 1743
Query 33704 CACGCGCGCGGAAGTGTTCTCGTTCGGCGACCCGATCGCCGTGCTGGATCGGCGCGAGCT 33763
|| |||| | ||| | || |||||||||||| | |||||||| || ||||| ||
Sbjct 1744 AGCG---TCGGAGGCGTTTACCTTTGGCGACCCGATCCCGGTGCTGGACCGCCGCGAACT 1800
Query 33764 GCTCGACTACGTCGAGTGCATGCGCATGGGGAACTGGTACGAGCCGCCGCTGCCGCTCGA 33823
||| |||||||| |||||| | || | |||||| || || || || | ||
Sbjct 1801 GCTGGACTACGTGGAGTGCGTTATCAATGATCGCTGGTATGAACCACCCGTGAGCGTTGA 1860
Query 33824 CGGGCTCGCGCGTTCGTTCCGGGCCGCGCCGCATCACAGCTCGGCCATCTACGTGAAGCG 33883
|||||| ||||| ||||||| ||||| |||||||||||| ||||| ||||||| |
Sbjct 1861 CGGGCTGGCGCGCACGTTCCGCGCCGCCGTGCATCACAGCTCACCCATCAGCGTGAAGTG 1920
Query 33884 CAA 33886
|||
Sbjct 1921 CAA 1923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118911089874920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |