Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq52999 408 1e-109 >seq52999 Length=1923 Score = 408 bits (452), Expect = 1e-109 Identities = 848/1253 (68%), Gaps = 40/1253 (3%) Strand=Plus/Plus Query 28629 GAAGGACAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGACAGATCGA 28688 |||||| ||||||| || ||||| |||||||||||||||||| | || ||| ||| Sbjct 122 GAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGA 181 Query 28689 GCGGCTCGCGCGCGTGCAGAAATACGGGGAGACGGGGAAGGAAGGCGACCTGAACCCGAA 28748 ||| | || || | |||| | | | || || |||| |||||||| ||||| Sbjct 182 GCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGACCTGAATCCGAA 241 Query 28749 CATTGCCGCGCGCAATGCCGGGCCGAAGCGCAAGCCGCCGAAAAACGAAA----TCAGCG 28804 | | | ||||| || ||| || ||||| ||| |||| ||| |||||| Sbjct 242 CGTGGAGAACCGCAACAAGGGCCCG---CGTAAGCCCCCGGAAAA-GAACCTGTTCAGCG 297 Query 28805 AGGAACAGGAAGAGCGGATCGTGAAGGCGTTCCGCGAATCACTGTTCGACTACCAGAAGG 28864 | |||||| ||| | | | ||| |||| || || |||||| ||||||| Sbjct 298 ACGAACAGATTGAGAAGCTGCAGGAGGTTTTCCACGGCTCGATGTTCGGCTACCAGCGCC 357 Query 28865 TCTGGTATCGAAACGGCGATCAGCAGACG---CGCAATATCCTGAAGTCACGGCAGATCG 28921 |||| ||| || || | | ||||| | |||||||| || ||||| | Sbjct 358 AGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCCAGATTG 417 Query 28922 GCGCCACCTGGTATTTCGCACGCGAGGCATTCGTCGACGCGCTCGATACCGGCCGCAACC 28981 | ||||||| | ||| || |||||||| | |||| ||||| ||||| ||||| | Sbjct 418 GGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGCGCAATC 477 Query 28982 AGATTTTTCTATCGGCCAGCAAAGCACAGGCGCACGTCTTCAAACAGTACATCGTGCAGT 29041 |||| || || || ||||| || || ||||||||||||||||| ||||||||| | | | Sbjct 478 AGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCATTGAAT 537 Query 29042 TCGCTCGTGACGTGGCCGACGTTGAGCTGACGGGCGATCCGATCATTCTGCCGAACGGTG 29101 | || || || |||| |||| || |||| |||||| ||||| | || ||||||| Sbjct 538 TTGCCCGCGAGGTGG---ACGTAGACCTGAAGGGCGACCCGATGACGCTCAGTAACGGTG 594 Query 29102 CGACGCTGTACTTCCTAGGGACGAACTCGCGCACCGCGCAGTCGTATCACGGCAATCTGT 29161 || ||||| ||||| || || ||| | |||||||||||| |||||||||||||||| Sbjct 595 CGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGGCAATCTGT 654 Query 29162 ACTTCGACGAATATTTCTGGGTGCCGAAGTTCCGCGAGCTGAATACCGTTGCGTCGGGCA 29221 || | || |||||||||||| | |||||||| | || ||| | | || ||||| |||| Sbjct 655 ACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGTCCGGCA 714 Query 29222 TGGCGATGCACAAACGCTGGCGGCTGACCTACTTCAGCACGCCGTCGAGTACGACCCATG 29281 ||||| ||||||| ||||| |||||||| ||| ||||| || || || Sbjct 715 TGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCACGCACA 774 Query 29282 AAGCCTACGCGTTCTGGAGCGG--CGCCGATGCGAATCGTGGGCGCGCGCC-TAGC-GAT 29337 ||||| |||||||| ||| ||| | | | | |||| || ||| ||| || Sbjct 775 GCGCCTATCCGTTCTGGTCCGGTTCGCAGTT---CAACAAGGGC-CGGGCCAAAGCTGAC 830 Query 29338 CGTATCCAGATCGACACGAGCCACGAAGCGCTCGTGCGAGGCATGCTGGGCGAGGACGAG 29397 || | | || ||| ||||| | | || | || || |||| |||| Sbjct 831 CGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACGGC 890 Query 29398 CAGTGGCGTCAGATCGTCACCGTACTCGATGCGATCGAGGGCGGCTGCGACTTGTTCGAC 29457 |||| || |||||||||||||| |||||| | |||||||| ||| |||| ||| Sbjct 891 CAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTGAC 950 Query 29458 CTGGAGAGACTTCGGCGCCGGTACAGTGCAGAGGCTTTCGCGAACCTGCTGATGTGCCAG 29517 |||||| || || || ||||| | |||| || | |||||||||||||||| Sbjct 951 CTGGAGCAGCTGCGCACGCGCTACAGCCCGGAGGATTACCAGAACCTGCTGATGTGCGTC 1010 Query 29518 TTCATCGACGATTCGGTGTCGGTGTTCAAGCTGGCCGAGCTGCAGCGCTGCATGGTCGAC 29577 || || |||||| || |||||| ||| |||||||| ||||||| |||||||| ||| Sbjct 1011 TTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATGCATGGTGGAC 1070 Query 29578 TCGTGGGAGGAATGGGCCGACGACTTCTCGCNNNNNNNNNNNCGTCCGTTCGGCTATCGC 29637 ||||| | ||| | |||||| | || |||||||||| Sbjct 1071 AGCTGGGAAGTCTGGAC---CGACTTTGAGGCGCTGGCGCTGCGCCCGTTCGGCTGGAAA 1127 Query 29638 GAGGTGTGGGTTGGCTACGATCCGG---------CGCTGACTGGCGACTCAGCCGGTCTC 29688 || |||||| | |||||||| || | ||| || |||||| ||||| | Sbjct 1128 GAAGTGTGGATCGGCTACGACCCCGCGAAGGGAACGCAGAACGGCGACAGCGCCGGATGC 1187 Query 29689 GTTGTCGTGGCGCCGCC--GCGTGTCGAGGGTGGGACGTTCCGCGTGCTCGAACGTCACC 29746 || ||| |||| ||||| |||| | ||| || | ||||||| | || || ||||||| Sbjct 1188 GTGGTCATGGCACCGCCTGCCGTGCC--GGGCGGCAAGTTCCGCATCCTTGAGCGTCACC 1245 Query 29747 AGTTCCGCGGCAACGACTTCGAGGAACAGGCCGCGGCGATC-GAACAGATCACGCAGCGC 29805 ||| ||||| | |||||| || ||||| | || ||| | || | | ||||||| Sbjct 1246 AGTGGCGCGGGATGGACTTCCGGGCGCAGGCTGACGCCATCAGGAC-GCTGACGCAGCAG 1304 Query 29806 TACAACGTCGGCTATATCGCGATCGACACGACGGGCATGGGGCAGGGCGTCTA 29858 || |||||| |||||||| |||||| | || ||| | |||| ||||| || Sbjct 1305 TATAACGTCACCTATATCGGCATCGACTCCACCGGCGTCGGGCTTGGCGTATA 1357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129520958881180