Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_015266.1
Length=40555
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 408 1e-109
>seq52999
Length=1923
Score = 408 bits (452), Expect = 1e-109
Identities = 848/1253 (68%), Gaps = 40/1253 (3%)
Strand=Plus/Plus
Query 28629 GAAGGACAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGACAGATCGA 28688
|||||| ||||||| || ||||| |||||||||||||||||| | || ||| |||
Sbjct 122 GAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGA 181
Query 28689 GCGGCTCGCGCGCGTGCAGAAATACGGGGAGACGGGGAAGGAAGGCGACCTGAACCCGAA 28748
||| | || || | |||| | | | || || |||| |||||||| |||||
Sbjct 182 GCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGACCTGAATCCGAA 241
Query 28749 CATTGCCGCGCGCAATGCCGGGCCGAAGCGCAAGCCGCCGAAAAACGAAA----TCAGCG 28804
| | | ||||| || ||| || ||||| ||| |||| ||| ||||||
Sbjct 242 CGTGGAGAACCGCAACAAGGGCCCG---CGTAAGCCCCCGGAAAA-GAACCTGTTCAGCG 297
Query 28805 AGGAACAGGAAGAGCGGATCGTGAAGGCGTTCCGCGAATCACTGTTCGACTACCAGAAGG 28864
| |||||| ||| | | | ||| |||| || || |||||| |||||||
Sbjct 298 ACGAACAGATTGAGAAGCTGCAGGAGGTTTTCCACGGCTCGATGTTCGGCTACCAGCGCC 357
Query 28865 TCTGGTATCGAAACGGCGATCAGCAGACG---CGCAATATCCTGAAGTCACGGCAGATCG 28921
|||| ||| || || | | ||||| | |||||||| || ||||| |
Sbjct 358 AGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCCAGATTG 417
Query 28922 GCGCCACCTGGTATTTCGCACGCGAGGCATTCGTCGACGCGCTCGATACCGGCCGCAACC 28981
| ||||||| | ||| || |||||||| | |||| ||||| ||||| ||||| |
Sbjct 418 GGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGCGCAATC 477
Query 28982 AGATTTTTCTATCGGCCAGCAAAGCACAGGCGCACGTCTTCAAACAGTACATCGTGCAGT 29041
|||| || || || ||||| || || ||||||||||||||||| ||||||||| | | |
Sbjct 478 AGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCATTGAAT 537
Query 29042 TCGCTCGTGACGTGGCCGACGTTGAGCTGACGGGCGATCCGATCATTCTGCCGAACGGTG 29101
| || || || |||| |||| || |||| |||||| ||||| | || |||||||
Sbjct 538 TTGCCCGCGAGGTGG---ACGTAGACCTGAAGGGCGACCCGATGACGCTCAGTAACGGTG 594
Query 29102 CGACGCTGTACTTCCTAGGGACGAACTCGCGCACCGCGCAGTCGTATCACGGCAATCTGT 29161
|| ||||| ||||| || || ||| | |||||||||||| ||||||||||||||||
Sbjct 595 CGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGGCAATCTGT 654
Query 29162 ACTTCGACGAATATTTCTGGGTGCCGAAGTTCCGCGAGCTGAATACCGTTGCGTCGGGCA 29221
|| | || |||||||||||| | |||||||| | || ||| | | || ||||| ||||
Sbjct 655 ACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGTCCGGCA 714
Query 29222 TGGCGATGCACAAACGCTGGCGGCTGACCTACTTCAGCACGCCGTCGAGTACGACCCATG 29281
||||| ||||||| ||||| |||||||| ||| ||||| || || ||
Sbjct 715 TGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCACGCACA 774
Query 29282 AAGCCTACGCGTTCTGGAGCGG--CGCCGATGCGAATCGTGGGCGCGCGCC-TAGC-GAT 29337
||||| |||||||| ||| ||| | | | | |||| || ||| ||| ||
Sbjct 775 GCGCCTATCCGTTCTGGTCCGGTTCGCAGTT---CAACAAGGGC-CGGGCCAAAGCTGAC 830
Query 29338 CGTATCCAGATCGACACGAGCCACGAAGCGCTCGTGCGAGGCATGCTGGGCGAGGACGAG 29397
|| | | || ||| ||||| | | || | || || |||| ||||
Sbjct 831 CGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACGGC 890
Query 29398 CAGTGGCGTCAGATCGTCACCGTACTCGATGCGATCGAGGGCGGCTGCGACTTGTTCGAC 29457
|||| || |||||||||||||| |||||| | |||||||| ||| |||| |||
Sbjct 891 CAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTGAC 950
Query 29458 CTGGAGAGACTTCGGCGCCGGTACAGTGCAGAGGCTTTCGCGAACCTGCTGATGTGCCAG 29517
|||||| || || || ||||| | |||| || | ||||||||||||||||
Sbjct 951 CTGGAGCAGCTGCGCACGCGCTACAGCCCGGAGGATTACCAGAACCTGCTGATGTGCGTC 1010
Query 29518 TTCATCGACGATTCGGTGTCGGTGTTCAAGCTGGCCGAGCTGCAGCGCTGCATGGTCGAC 29577
|| || |||||| || |||||| ||| |||||||| ||||||| |||||||| |||
Sbjct 1011 TTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATGCATGGTGGAC 1070
Query 29578 TCGTGGGAGGAATGGGCCGACGACTTCTCGCNNNNNNNNNNNCGTCCGTTCGGCTATCGC 29637
||||| | ||| | |||||| | || ||||||||||
Sbjct 1071 AGCTGGGAAGTCTGGAC---CGACTTTGAGGCGCTGGCGCTGCGCCCGTTCGGCTGGAAA 1127
Query 29638 GAGGTGTGGGTTGGCTACGATCCGG---------CGCTGACTGGCGACTCAGCCGGTCTC 29688
|| |||||| | |||||||| || | ||| || |||||| ||||| |
Sbjct 1128 GAAGTGTGGATCGGCTACGACCCCGCGAAGGGAACGCAGAACGGCGACAGCGCCGGATGC 1187
Query 29689 GTTGTCGTGGCGCCGCC--GCGTGTCGAGGGTGGGACGTTCCGCGTGCTCGAACGTCACC 29746
|| ||| |||| ||||| |||| | ||| || | ||||||| | || || |||||||
Sbjct 1188 GTGGTCATGGCACCGCCTGCCGTGCC--GGGCGGCAAGTTCCGCATCCTTGAGCGTCACC 1245
Query 29747 AGTTCCGCGGCAACGACTTCGAGGAACAGGCCGCGGCGATC-GAACAGATCACGCAGCGC 29805
||| ||||| | |||||| || ||||| | || ||| | || | | |||||||
Sbjct 1246 AGTGGCGCGGGATGGACTTCCGGGCGCAGGCTGACGCCATCAGGAC-GCTGACGCAGCAG 1304
Query 29806 TACAACGTCGGCTATATCGCGATCGACACGACGGGCATGGGGCAGGGCGTCTA 29858
|| |||||| |||||||| |||||| | || ||| | |||| ||||| ||
Sbjct 1305 TATAACGTCACCTATATCGGCATCGACTCCACCGGCGTCGGGCTTGGCGTATA 1357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129520958881180
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