Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq52999 361 1e-95 >seq52999 Length=1923 Score = 361 bits (400), Expect = 1e-95 Identities = 1161/1781 (65%), Gaps = 54/1781 (3%) Strand=Plus/Plus Query 24978 GACTTCAAGGAAATCGACTTGCTCGGCCGTCAGGTCGAGCGGCTTGCACGCGTGCGCAAG 25037 |||||||||||||||||| |||| | || ||| |||||| | ||| || | |||| Sbjct 144 GACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGAGCGCCATGCCCGGATCGGCAAA 203 Query 25038 TACGGCGAAACGGGGAAAGAGAGCG-ACTTAAACCCGAACATCGAGGCGCGCAACAAAGC 25096 | | || | || || || |||| || | || |||||| | ||| |||||||| | Sbjct 204 TTCAGCAATGGCGGCAATGA-AGCGGACCTGAATCCGAACGTGGAGAACCGCAACAAGGG 262 Query 25097 GCCCCGTAAAGAAAAGGCCGCCCGCAACGAT----TTCAGCGACGAGCAGATCGCACGGC 25152 || ||||| ||| || | || || ||||||||||| ||||| | || Sbjct 263 CCCGCGTAA-------GCCCCCGGAAAAGAACCTGTTCAGCGACGAACAGATTGAGAAGC 315 Query 25153 TTCACGAGGCCTTTCTTGATTGCCAGTTCGGTTATCAAAAGGTGTGGTATCGAAACGGCC 25212 | || |||| || | | | |||||| || || ||||| ||| Sbjct 316 TGCAGGAGGTTTTCCACGGCTCGATGTTCGGCTACCAGCGCCAGTGGTGGGAGGCCGGGA 375 Query 25213 ATCAGCGCACG---CGCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTTCTATTTCG 25269 || || | | |||||| | || |||||||| ||||| || || || |||| ||| | Sbjct 376 ATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCCAGATTGGGGCCACCTTCTTTTTTG 435 Query 25270 CACGCGAGGCGCTAGACGATGCCTTGCAGACTGCACGCAATCAGATTTTTCTATCGGCCA 25329 | ||||||||||| |||||| || || | ||||||||||| || || || |||| Sbjct 436 CCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGCGCAATCAGATATTCCTTTCAGCCA 495 Query 25330 GCAAGGCGCAGGCGCACGTTTTCAAGTCGTACATTCGGCAGTTTGCCGCCGAGGCCGCCG 25389 | ||||||||||||||||| |||||| |||||| | |||||| ||||| | || Sbjct 496 GTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCATTGAATTTGCCCGCGAGGTGGACG 555 Query 25390 AGGTCGAATTGACCGGCGACCCGATCATTTTGCCGAACATGGCAGAGTTGATTTTCCTCG 25449 | || ||| ||||||||||| | | ||| || || |||||| | Sbjct 556 ---TAGACCTGAAGGGCGACCCGATGACGCTCAGTAACGGTGCGTGCCTGTATTTCCTGG 612 Query 25450 GCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGAGTATTTTT 25509 |||| || | || || ||||||||||||||||||||| | || | || || ||||| | Sbjct 613 GCACCAACGCCCGCACCGCGCAGAGCTATCACGGCAATCTGTACCTGGATGAATATTTCT 672 Query 25510 GGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCACAAGAAAT 25569 || | ||||| | || | || || || || ||||||||| |||||||||| | Sbjct 673 GGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGTCCGGCATGGCGCTGCACAAGAAGT 732 Query 25570 GGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTACACCTTCTGGA 25629 |||| | || || ||||| || ||||| ||| |||||||| || || | |||||| Sbjct 733 GGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCACGCACAGCGCCTATCCGTTCTGGT 792 Query 25630 GTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTCGATATTTCGC 25689 || ||| | ||||| |||||| || || || || | || || | || | | Sbjct 793 CCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGCTGACCGGGTTGATATTGACCTCAGCC 852 Query 25690 ACTCGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACAGTTTCGCCAGATCGTGACGG 25749 | | | || || ||| || |||||||| || | ||||||||||||||||| || | Sbjct 853 ATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACGGCCAGTTTCGCCAGATCGTCACCG 912 Query 25750 TCGAGGATGCCGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCTGCGCCTTGAAT 25809 | || ||||| || |||||| || ||| |||| || | || |||||||| | Sbjct 913 TTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTGACCTGGAGCAGCTGCGCACGCGCT 972 Query 25810 ACAGCGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTTTATCGACGATACCGCGTCGA 25869 ||||| || |||| ||| ||| ||| ||||||| ||||| |||||| |||||| Sbjct 973 ACAGCCCGGAGGATTACCAGAACCTGCTGATGTGCGTCTTTATGGACGATCTGGCGTCGG 1032 Query 25870 TCTTTCCGCTCGCCGAGCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCCGACG 25929 | || | ||| ||| |||||| |||||||| ||| ||||||| ||| ||||| Sbjct 1033 TATTCCAGCTGGCCATGCTGCAGAAATGCATGGTGGACAGCTGGGAAGTCTGGACCGAC- 1091 Query 25930 ATTTCAAGCCGCTCGCGCCCCGCCCTTTCGGGTTCCGGCCGGTATGGGTTGGCTACGATC 25989 || || |||| |||| ||||| ||||| | || ||| | |||||||| | Sbjct 1092 --TTTGAGGCGCTGGCGCTGCGCCCGTTCGGCTGGAAAGAAGTGTGGATCGGCTACGACC 1149 Query 25990 C---------AGCGCTTTCCGGCGACTCGGCCGGCCTTGTCNNNNNNNNNNNNNNNNNNN 26040 | | ||| ||||||| ||||| || Sbjct 1150 CCGCGAAGGGAACGCAGAACGGCGACAGCGCCGGATGCGTGGTCATGGCACCGCCTGCCG 1209 Query 26041 TGCCGGGGGGCAAGTTCCGCGT-ATTGCACAAGT-GCCAATTTCGCGGCATGGATTTCGA 26098 ||||||| |||||||||||| | ||| | || ||| | ||||| ||||| ||| Sbjct 1210 TGCCGGGCGGCAAGTTCCGCATCCTTGAGC--GTCACCAGTGGCGCGGGATGGACTTCCG 1267 Query 26099 GGGGCAAGCCGAGGCGATTCGACAGATCACTCAGCAATACAACGTCGAATATATGTCGAT 26158 || ||| || || || || | | | || ||||| || |||||| ||||| || Sbjct 1268 GGCGCAGGCTGACGCCATCAGGACGCTGACGCAGCAGTATAACGTCACCTATATCGGCAT 1327 Query 26159 CGATACGACGGGCATCGGCCAGGGTGTTTATCAGCTCGTCAAACAGTTCTATCCGAGCGC 26218 ||| | || ||| |||| | || || || || |||||| |||| ||| | Sbjct 1328 CGACTCCACCGGCGTCGGGCTTGGCGTATACGAGAATGTCAAAGCCTTCTTCCCGCAGGT 1387 Query 26219 GGTCGCGCTCAACTATTCGCCCGAA-ATCAAGGGGCGTCTCGTGCTTAAGGGCTT--GTC 26275 | | | | ||| | |||||| | || || ||||| || ||||| | | Sbjct 1388 GAAGGAGTTTGTCTA-TAACCCGAACGTGAAAAACGCCCTGGTGCTGAA-GGCTTACGAC 1445 Query 26276 GGTGATCGGCAAGGGCCGGCTCGAATTCGATGCCGGTTGGACAGACCTAGCGCAATCCTT 26335 |||| || || ||||| || || || ||| | ||| | ||||| || || Sbjct 1446 -ACCATCGCCAGCGGGCGGCTGGAGTTTGACGCCAGCCACCTCGACATCGCGCAGTCATT 1504 Query 26336 CATGGCCATTCGGAAAACCATGACGGCGAGCGGCCGAAAGGT--GACATACGAGGCGAGC 26393 ||| | || || ||| ||| ||||| |||||| || || ||| || || | ||| Sbjct 1505 TATGTCTATCCGCAAAGCCACCACGGCCAGCGGC--AACCGTCCGACCTATGAAACCAGC 1562 Query 26394 CGCAGCGAGGAAACCGGCCACGCCGATCTAGCGTGGGCGTGCCTGCACGCGCTCGATAAC 26453 |||||||||||| | |||||| |||| |||| |||||| | |||||||||| | ||| Sbjct 1563 CGCAGCGAGGAAGTCAGCCACGGCGATTTAGCCTGGGCGACCATGCACGCGCTGGCAAAC 1622 Query 26454 GAGCCGCTAGAGGGCACGACCGCAAACAATACCGGCTTTATGGAGTTCTCTTAATGAGCA 26513 |||||||| |||| | | ||| ||| | || ||||| | | | ||||||| Sbjct 1623 GAGCCGCTGCAGGGACAGGCGGCACACACGCAGAACATTGTGGAGATTTACTGATGAGCA 1682 Query 26514 AGCGTAAGCAGCGCAGCAACTATCACGCGTCGAGCACGACGCCGGCGGCCACGTCGACGC 26573 | || | | | |||| | | || || || || || ||||| || | | | || Sbjct 1683 AACGCAGGAACCGCACCCGCACGCA-GC-CCGTGC-CGCAGCCGGATAACATGACCA-GC 1738 Query 26574 CGGCGCGCG-CCGAGGCCTTCACCTTCGACGATCCTGTGCCGGTGATGGATCGCGCCGAA 26632 || ||| | ||||| || ||||| | ||| || | |||||| |||| ||| |||| Sbjct 1739 GGGGCAGCGTCGGAGGCGTTTACCTTTGGCGACCCGATCCCGGTGCTGGACCGCCGCGAA 1798 Query 26633 ATTCTTGACTACGTGCA-AGCGTATGCGATCGGCGATTGGTATGAGCCGCCGGTG-TCAT 26690 | || ||||||||| | |||| | || || |||||||| || || ||| | | Sbjct 1799 CTGCTGGACTACGTGGAGTGCGTTATCAATGATCG-CTGGTATGAACCACCCGTGAGCGT 1857 Query 26691 GGGCGGGCCTTGCAAAGACGTTTCGCGCCGGCGTGCATCAC 26731 | |||| || || ||||| ||||||| |||||||||| Sbjct 1858 TGACGGG-CTGGCGCGCACGTTCCGCGCCGCCGTGCATCAC 1897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103186490404660