Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_015273.1
Length=32317
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 361 1e-95
>seq52999
Length=1923
Score = 361 bits (400), Expect = 1e-95
Identities = 1161/1781 (65%), Gaps = 54/1781 (3%)
Strand=Plus/Plus
Query 24978 GACTTCAAGGAAATCGACTTGCTCGGCCGTCAGGTCGAGCGGCTTGCACGCGTGCGCAAG 25037
|||||||||||||||||| |||| | || ||| |||||| | ||| || | ||||
Sbjct 144 GACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGAGCGCCATGCCCGGATCGGCAAA 203
Query 25038 TACGGCGAAACGGGGAAAGAGAGCG-ACTTAAACCCGAACATCGAGGCGCGCAACAAAGC 25096
| | || | || || || |||| || | || |||||| | ||| |||||||| |
Sbjct 204 TTCAGCAATGGCGGCAATGA-AGCGGACCTGAATCCGAACGTGGAGAACCGCAACAAGGG 262
Query 25097 GCCCCGTAAAGAAAAGGCCGCCCGCAACGAT----TTCAGCGACGAGCAGATCGCACGGC 25152
|| ||||| ||| || | || || ||||||||||| ||||| | ||
Sbjct 263 CCCGCGTAA-------GCCCCCGGAAAAGAACCTGTTCAGCGACGAACAGATTGAGAAGC 315
Query 25153 TTCACGAGGCCTTTCTTGATTGCCAGTTCGGTTATCAAAAGGTGTGGTATCGAAACGGCC 25212
| || |||| || | | | |||||| || || ||||| |||
Sbjct 316 TGCAGGAGGTTTTCCACGGCTCGATGTTCGGCTACCAGCGCCAGTGGTGGGAGGCCGGGA 375
Query 25213 ATCAGCGCACG---CGCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTTCTATTTCG 25269
|| || | | |||||| | || |||||||| ||||| || || || |||| ||| |
Sbjct 376 ATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCCAGATTGGGGCCACCTTCTTTTTTG 435
Query 25270 CACGCGAGGCGCTAGACGATGCCTTGCAGACTGCACGCAATCAGATTTTTCTATCGGCCA 25329
| ||||||||||| |||||| || || | ||||||||||| || || || ||||
Sbjct 436 CCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGCGCAATCAGATATTCCTTTCAGCCA 495
Query 25330 GCAAGGCGCAGGCGCACGTTTTCAAGTCGTACATTCGGCAGTTTGCCGCCGAGGCCGCCG 25389
| ||||||||||||||||| |||||| |||||| | |||||| ||||| | ||
Sbjct 496 GTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCATTGAATTTGCCCGCGAGGTGGACG 555
Query 25390 AGGTCGAATTGACCGGCGACCCGATCATTTTGCCGAACATGGCAGAGTTGATTTTCCTCG 25449
| || ||| ||||||||||| | | ||| || || |||||| |
Sbjct 556 ---TAGACCTGAAGGGCGACCCGATGACGCTCAGTAACGGTGCGTGCCTGTATTTCCTGG 612
Query 25450 GCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGAGTATTTTT 25509
|||| || | || || ||||||||||||||||||||| | || | || || ||||| |
Sbjct 613 GCACCAACGCCCGCACCGCGCAGAGCTATCACGGCAATCTGTACCTGGATGAATATTTCT 672
Query 25510 GGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCACAAGAAAT 25569
|| | ||||| | || | || || || || ||||||||| |||||||||| |
Sbjct 673 GGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGTCCGGCATGGCGCTGCACAAGAAGT 732
Query 25570 GGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTACACCTTCTGGA 25629
|||| | || || ||||| || ||||| ||| |||||||| || || | ||||||
Sbjct 733 GGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCACGCACAGCGCCTATCCGTTCTGGT 792
Query 25630 GTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTCGATATTTCGC 25689
|| ||| | ||||| |||||| || || || || | || || | || | |
Sbjct 793 CCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGCTGACCGGGTTGATATTGACCTCAGCC 852
Query 25690 ACTCGGCGCTCGCTCGCGGCCGGCTCTGCGAGGATCGACAGTTTCGCCAGATCGTGACGG 25749
| | | || || ||| || |||||||| || | ||||||||||||||||| || |
Sbjct 853 ATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACGGCCAGTTTCGCCAGATCGTCACCG 912
Query 25750 TCGAGGATGCCGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCTGCGCCTTGAAT 25809
| || ||||| || |||||| || ||| |||| || | || |||||||| |
Sbjct 913 TTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTGACCTGGAGCAGCTGCGCACGCGCT 972
Query 25810 ACAGCGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTTTATCGACGATACCGCGTCGA 25869
||||| || |||| ||| ||| ||| ||||||| ||||| |||||| ||||||
Sbjct 973 ACAGCCCGGAGGATTACCAGAACCTGCTGATGTGCGTCTTTATGGACGATCTGGCGTCGG 1032
Query 25870 TCTTTCCGCTCGCCGAGCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCCGACG 25929
| || | ||| ||| |||||| |||||||| ||| ||||||| ||| |||||
Sbjct 1033 TATTCCAGCTGGCCATGCTGCAGAAATGCATGGTGGACAGCTGGGAAGTCTGGACCGAC- 1091
Query 25930 ATTTCAAGCCGCTCGCGCCCCGCCCTTTCGGGTTCCGGCCGGTATGGGTTGGCTACGATC 25989
|| || |||| |||| ||||| ||||| | || ||| | |||||||| |
Sbjct 1092 --TTTGAGGCGCTGGCGCTGCGCCCGTTCGGCTGGAAAGAAGTGTGGATCGGCTACGACC 1149
Query 25990 C---------AGCGCTTTCCGGCGACTCGGCCGGCCTTGTCNNNNNNNNNNNNNNNNNNN 26040
| | ||| ||||||| ||||| ||
Sbjct 1150 CCGCGAAGGGAACGCAGAACGGCGACAGCGCCGGATGCGTGGTCATGGCACCGCCTGCCG 1209
Query 26041 TGCCGGGGGGCAAGTTCCGCGT-ATTGCACAAGT-GCCAATTTCGCGGCATGGATTTCGA 26098
||||||| |||||||||||| | ||| | || ||| | ||||| ||||| |||
Sbjct 1210 TGCCGGGCGGCAAGTTCCGCATCCTTGAGC--GTCACCAGTGGCGCGGGATGGACTTCCG 1267
Query 26099 GGGGCAAGCCGAGGCGATTCGACAGATCACTCAGCAATACAACGTCGAATATATGTCGAT 26158
|| ||| || || || || | | | || ||||| || |||||| ||||| ||
Sbjct 1268 GGCGCAGGCTGACGCCATCAGGACGCTGACGCAGCAGTATAACGTCACCTATATCGGCAT 1327
Query 26159 CGATACGACGGGCATCGGCCAGGGTGTTTATCAGCTCGTCAAACAGTTCTATCCGAGCGC 26218
||| | || ||| |||| | || || || || |||||| |||| ||| |
Sbjct 1328 CGACTCCACCGGCGTCGGGCTTGGCGTATACGAGAATGTCAAAGCCTTCTTCCCGCAGGT 1387
Query 26219 GGTCGCGCTCAACTATTCGCCCGAA-ATCAAGGGGCGTCTCGTGCTTAAGGGCTT--GTC 26275
| | | | ||| | |||||| | || || ||||| || ||||| | |
Sbjct 1388 GAAGGAGTTTGTCTA-TAACCCGAACGTGAAAAACGCCCTGGTGCTGAA-GGCTTACGAC 1445
Query 26276 GGTGATCGGCAAGGGCCGGCTCGAATTCGATGCCGGTTGGACAGACCTAGCGCAATCCTT 26335
|||| || || ||||| || || || ||| | ||| | ||||| || ||
Sbjct 1446 -ACCATCGCCAGCGGGCGGCTGGAGTTTGACGCCAGCCACCTCGACATCGCGCAGTCATT 1504
Query 26336 CATGGCCATTCGGAAAACCATGACGGCGAGCGGCCGAAAGGT--GACATACGAGGCGAGC 26393
||| | || || ||| ||| ||||| |||||| || || ||| || || | |||
Sbjct 1505 TATGTCTATCCGCAAAGCCACCACGGCCAGCGGC--AACCGTCCGACCTATGAAACCAGC 1562
Query 26394 CGCAGCGAGGAAACCGGCCACGCCGATCTAGCGTGGGCGTGCCTGCACGCGCTCGATAAC 26453
|||||||||||| | |||||| |||| |||| |||||| | |||||||||| | |||
Sbjct 1563 CGCAGCGAGGAAGTCAGCCACGGCGATTTAGCCTGGGCGACCATGCACGCGCTGGCAAAC 1622
Query 26454 GAGCCGCTAGAGGGCACGACCGCAAACAATACCGGCTTTATGGAGTTCTCTTAATGAGCA 26513
|||||||| |||| | | ||| ||| | || ||||| | | | |||||||
Sbjct 1623 GAGCCGCTGCAGGGACAGGCGGCACACACGCAGAACATTGTGGAGATTTACTGATGAGCA 1682
Query 26514 AGCGTAAGCAGCGCAGCAACTATCACGCGTCGAGCACGACGCCGGCGGCCACGTCGACGC 26573
| || | | | |||| | | || || || || || ||||| || | | | ||
Sbjct 1683 AACGCAGGAACCGCACCCGCACGCA-GC-CCGTGC-CGCAGCCGGATAACATGACCA-GC 1738
Query 26574 CGGCGCGCG-CCGAGGCCTTCACCTTCGACGATCCTGTGCCGGTGATGGATCGCGCCGAA 26632
|| ||| | ||||| || ||||| | ||| || | |||||| |||| ||| ||||
Sbjct 1739 GGGGCAGCGTCGGAGGCGTTTACCTTTGGCGACCCGATCCCGGTGCTGGACCGCCGCGAA 1798
Query 26633 ATTCTTGACTACGTGCA-AGCGTATGCGATCGGCGATTGGTATGAGCCGCCGGTG-TCAT 26690
| || ||||||||| | |||| | || || |||||||| || || ||| | |
Sbjct 1799 CTGCTGGACTACGTGGAGTGCGTTATCAATGATCG-CTGGTATGAACCACCCGTGAGCGT 1857
Query 26691 GGGCGGGCCTTGCAAAGACGTTTCGCGCCGGCGTGCATCAC 26731
| |||| || || ||||| ||||||| ||||||||||
Sbjct 1858 TGACGGG-CTGGCGCGCACGTTCCGCGCCGCCGTGCATCAC 1897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 103186490404660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |