Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13731 372 3e-98 seq22 246 3e-60 seq59797 134 2e-26 seq840 89.7 6e-13 >seq13731 Length=15303 Score = 372 bits (412), Expect = 3e-98 Identities = 1196/1855 (64%), Gaps = 46/1855 (2%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || ||||||||||| | || | ||| || | ||| || ||||| || ||||| || Sbjct 560 TTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCCT 619 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || |||| ||| |||| ||||||||||| ||| ||||| ||| ||| | || Sbjct 620 GTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGGC 679 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 |||| | ||| || |||| ||||| || || || || ||||| || | ||| |||||| Sbjct 680 TCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGCC 739 Query 47154 ATATCTAAAATAACCCTTTGTGGT-ATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 || | ||| || || | || |||||||| ||||| || | | ||||| Sbjct 740 ATTT-TAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCGAATGTG 798 Query 47213 TTCTGGGA--GATTAGTATT--TTGAATAGATCCTCCgttttctataattttgtttttta 47268 | || | |||| ||| ||| || || || | | | |||||||| ||||| | Sbjct 799 CTGCGGTATGGATTC-TATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 |||| ||| | ||||| | | | |||| |||| |||| || Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 ||||||| ||||| ||||| | ||| | || || ||| || || ||||| | || | Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 ||||||| || | ||||| |||||||| || || ||||| | ||||| | | | || Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 | || || |||| | || || | | |||| | ||| || || | | Sbjct 1038 TCCTAACACCATGCTGTTTAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGTGG 1097 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 | || ||| | |||||||| |||||||| || || | ||| | || | ||| | Sbjct 1098 GCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCATAAG 1157 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 ||| ||| | ||||||| | ||| | ||||||||| ||||| ||||||| |||||| | Sbjct 1158 TTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAATAAA 1217 Query 47629 TTGTTTCAAATATTTTTATGTTTA----GATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684 | ||||| || | | | |||| || | |||| ||| | | ||| | ||||| Sbjct 1218 TGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTG-TTC-GCT--TTCGTACGGATAG 1273 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 | | ||||| || ||||| || || || || ||||| | || | Sbjct 1274 CGCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTA 1333 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 || || | || || || ||||| || | ||||| || || |||||||| | | Sbjct 1334 AAGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAA 1393 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTA-AAATCA-AACTTGTT--ATT 47860 | ||| ||| | || ||||| || || || | Sbjct 1394 TTTCGTGTCACAGTTTTGGTGACTTC-CTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGG 1452 Query 47861 TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920 | | |||||| | || | || || ||||||| || |||||||| ||||||| || Sbjct 1453 TGTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGC 1512 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 || ||||| | ||||||| |||||||| | ||||| || || || | |||||| || Sbjct 1513 AGAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTG 1572 Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 |||| | | ||||| || |||||||| | |||| ||||||| || || || | ||| Sbjct 1573 ATTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTG 1632 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA------TAACAGCTCTAGCTTT 48094 ||||||||||| | ||||| | | ||| || | || ||| | ||| Sbjct 1633 GGATTCAATGATGGCGAACCAAAGACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC 1692 Query 48095 ATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAA 48154 || |||| | || |||||||| || || ||||| || || | || | || ||| Sbjct 1693 CTTTTCAT------ACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAA 1746 Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214 |||||||||| || ||||||||||||||||| || | | | || || | ||| Sbjct 1747 GCCAGGACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCAT 1806 Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 |||| |||||||||||| | ||| ||||||||| || | || | ||||| || || Sbjct 1807 GAATAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCC 1866 Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 | ||||| | || | || | ||| || | ||||| |||||||||||||| || || || Sbjct 1867 AGTATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAAT 1926 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | | || || || || ||| || ||||||| || | ||| || || | Sbjct 1927 GGCAAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAA 1986 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 || | |||||||| || | ||||||||| | ||||| || |||| || | || Sbjct 1987 TACCCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCC 2046 Query 48455 ACTAGCTCTTATATTACTAATTGAAAT----ACCTATACCACCTGCCATTTTAGATATTA 48510 | |||| ||| ||| || || || || ||||| || || || |||| Sbjct 2047 CTTTGCTCGTAT----GCAATGGACATTTAGTCCAATGCCACCAGCAGACTTGGAAATTA 2102 Query 48511 GAGCACACCGTTTAAGGGTA---TCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 |||||| || ||| | | | || || || || |||| | |||| | | Sbjct 2103 AAGCACA---TTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCA 2159 Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 |||| ||||| |||| |||||| || | ||| | | | ||| | ||||||||| | Sbjct 2160 ATAGGAAACAGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGG 2219 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687 |||| | || | || || | ||| ||||| ||||||||| | | ||| ||||| Sbjct 2220 CATGTGTGAAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTT 2279 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747 ||| ||||| || || |||||||||||||| | || || | ||||||||||||| Sbjct 2280 CACCATGAATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGC 2339 Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| | || | | ||| || || | |||||| ||||||||||| ||||| Sbjct 2340 CATTCAACTTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTA 2394 >seq22 Length=933496 Score = 246 bits (272), Expect = 3e-60 Identities = 481/704 (68%), Gaps = 10/704 (1%) Strand=Plus/Minus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 ||| || ||||||| |||||| ||| | | |||||||| || || || || || Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914 ||||| ||||| || | ||||||||||| || || || || || | || || | | Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT---TTC 329683 Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAA---GATGTTTAAACATCAAACATGCAAAATC 18971 || || || || || | ||| | |||| ||||||| || |||||||| Sbjct 329682 AATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATC 329623 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 ||||||| ||| ||||| || || | |||||||| ||||| ||||||||||| || Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091 || | ||| || | ||| || || |||||||| ||| |||||| || ||||| || Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503 Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCATTTCA 19150 || ||||| || | || | ||| ||| || | | ||| ||| |||||| || Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCA-AAGTTGGCCGATTTCGATGAAATCCACGCCA 329444 Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210 |||||||||||||||| || ||| ||||| ||||| |||| ||| || | || | Sbjct 329443 GTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTA-A 329385 Query 19211 TACGCTCATCTG-TATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269 | | | || ||| |||| ||||| ||| || |||| ||||||||||| ||||| Sbjct 329384 TCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 | ||| || || || || |||||||| || || || | || ||||| || || ||||| Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265 Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389 | || | ||| || || |||||||| || || ||||| || ||||| ||||| Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205 Query 19390 AATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCT 19449 || || || ||| ||||| ||||| ||| | |||||||| |||||| Sbjct 329204 AAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCT 329145 Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 || || | || || ||||| || ||||| || || || ||||| Sbjct 329144 TTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGC 329101 >seq59797 Length=1646 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056 || ||||||||||| ||||| ||||||||||||| ||||| || || | |||||| || Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575 Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116 || |||||||| ||||| ||||| ||||||||||| || ||||| || |||||||| || Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515 Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||| | || | | | || ||||| || | |||||| ||||| || || | Sbjct 1514 CCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAATG 1455 Query 19177 CATGGCATTGTCTCTATAG 19195 ||||| || || || |||| Sbjct 1454 CATGGAATAGTTTCAATAG 1436 Score = 120 bits (132), Expect = 3e-22 Identities = 175/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || || ||||| || || ||||| || ||||| |||||||||||||||| | | Sbjct 1322 TCGGAGTGTATATTCTCCATCATAATCTGGAAACCGTAGAAACATCTTGCTTCTGCGAGC 1263 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 ||||| || | |||||||||| | || ||||| || || || ||| || || Sbjct 1262 TGTACCTCGGAGGAGAATCTTTCGAGTAGGTTCTCATTGACAATACCGTCAGATGCGGCG 1203 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA--ATG-TATTCCAA 19437 || |||||||||||||| |||| || || || ||||| | ||| || | | ||| Sbjct 1202 AAGAATGCTAATACATGACTAATGAAGTGCTTCTCATCCTTGTTTATCTTGTTCTGCCAG 1143 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || | ||||| || || || || | |||||| | ||||| |||||||| |||||||| Sbjct 1142 TCCGTGATATCCTTCGACAAGTCCATTTCTTCTGCAGTCCAGAAAGAAGCTTCTGCTTTC 1083 Query 19498 TTATA 19502 || || Sbjct 1082 TTGTA 1078 >seq840 Length=183542 Score = 89.7 bits (98), Expect = 6e-13 Identities = 178/265 (67%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || || || ||| |||| | |||| | ||||||||||| |||| |||||| || Sbjct 95079 ATACCATCAATAAAATCACCAGCCATAGTCAATAGAAAACAGGATGACAATTGCGGTTGG 95020 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 | ||| | | | ||| | ||||||||| ||||| | || | || || | ||| Sbjct 95019 CGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTGAAATAGCGTTCCGAAAGCAAG 94960 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 ||||| |||| |||| | ||| ||||| ||| ||| | || || |||||||| Sbjct 94959 TTATAAGTTTAAATAGTGGCATCAATATCTTCACCATGAATATCAATGGAAACACGCATC 94900 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 ||||| | || || | ||||||||||||| ||| | || | | ||| | Sbjct 94899 AACATGTGCTGCGGGCGTTCAACAATTTTGCCATTCAACTTGAGTAAATAGG-------- 94848 Query 48777 AATGTTTTAAAACCAAAATAGTTGT 48801 | |||||| ||||||||||| |||| Sbjct 94847 AGTGTTTTGAAACCAAAATAATTGT 94823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561499825378800