Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 372 3e-98
seq22 246 3e-60
seq59797 134 2e-26
seq840 89.7 6e-13
>seq13731
Length=15303
Score = 372 bits (412), Expect = 3e-98
Identities = 1196/1855 (64%), Gaps = 46/1855 (2%)
Strand=Plus/Plus
Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033
|| ||||||||||| | || | ||| || | ||| || ||||| || ||||| ||
Sbjct 560 TTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCCT 619
Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093
|| |||| ||| |||| ||||||||||| ||| ||||| ||| ||| | ||
Sbjct 620 GTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGGC 679
Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153
|||| | ||| || |||| ||||| || || || || ||||| || | ||| ||||||
Sbjct 680 TCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGCC 739
Query 47154 ATATCTAAAATAACCCTTTGTGGT-ATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212
|| | ||| || || | || |||||||| ||||| || | | |||||
Sbjct 740 ATTT-TAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCGAATGTG 798
Query 47213 TTCTGGGA--GATTAGTATT--TTGAATAGATCCTCCgttttctataattttgtttttta 47268
| || | |||| ||| ||| || || || | | | |||||||| ||||| |
Sbjct 799 CTGCGGTATGGATTC-TATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857
Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328
|||| ||| | ||||| | | | |||| |||| |||| ||
Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917
Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388
||||||| ||||| ||||| | ||| | || || ||| || || ||||| | || |
Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977
Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448
||||||| || | ||||| |||||||| || || ||||| | ||||| | | | ||
Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037
Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508
| || || |||| | || || | | |||| | ||| || || | |
Sbjct 1038 TCCTAACACCATGCTGTTTAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGTGG 1097
Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568
| || ||| | |||||||| |||||||| || || | ||| | || | ||| |
Sbjct 1098 GCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCATAAG 1157
Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628
||| ||| | ||||||| | ||| | ||||||||| ||||| ||||||| |||||| |
Sbjct 1158 TTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAATAAA 1217
Query 47629 TTGTTTCAAATATTTTTATGTTTA----GATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684
| ||||| || | | | |||| || | |||| ||| | | ||| | |||||
Sbjct 1218 TGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTG-TTC-GCT--TTCGTACGGATAG 1273
Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744
| | ||||| || ||||| || || || || ||||| | || |
Sbjct 1274 CGCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTA 1333
Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804
|| || | || || || ||||| || | ||||| || || |||||||| | |
Sbjct 1334 AAGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAA 1393
Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTA-AAATCA-AACTTGTT--ATT 47860
| ||| ||| | || ||||| || || || |
Sbjct 1394 TTTCGTGTCACAGTTTTGGTGACTTC-CTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGG 1452
Query 47861 TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920
| | |||||| | || | || || ||||||| || |||||||| ||||||| ||
Sbjct 1453 TGTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGC 1512
Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980
|| ||||| | ||||||| |||||||| | ||||| || || || | |||||| ||
Sbjct 1513 AGAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTG 1572
Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040
|||| | | ||||| || |||||||| | |||| ||||||| || || || | |||
Sbjct 1573 ATTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTG 1632
Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA------TAACAGCTCTAGCTTT 48094
||||||||||| | ||||| | | ||| || | || ||| | |||
Sbjct 1633 GGATTCAATGATGGCGAACCAAAGACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC 1692
Query 48095 ATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAA 48154
|| |||| | || |||||||| || || ||||| || || | || | || |||
Sbjct 1693 CTTTTCAT------ACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAA 1746
Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214
|||||||||| || ||||||||||||||||| || | | | || || | |||
Sbjct 1747 GCCAGGACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCAT 1806
Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274
|||| |||||||||||| | ||| ||||||||| || | || | ||||| || ||
Sbjct 1807 GAATAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCC 1866
Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334
| ||||| | || | || | ||| || | ||||| |||||||||||||| || || ||
Sbjct 1867 AGTATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAAT 1926
Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394
|| | | || || || || ||| || ||||||| || | ||| || || |
Sbjct 1927 GGCAAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAA 1986
Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454
|| | |||||||| || | ||||||||| | ||||| || |||| || | ||
Sbjct 1987 TACCCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCC 2046
Query 48455 ACTAGCTCTTATATTACTAATTGAAAT----ACCTATACCACCTGCCATTTTAGATATTA 48510
| |||| ||| ||| || || || || ||||| || || || ||||
Sbjct 2047 CTTTGCTCGTAT----GCAATGGACATTTAGTCCAATGCCACCAGCAGACTTGGAAATTA 2102
Query 48511 GAGCACACCGTTTAAGGGTA---TCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567
|||||| || ||| | | | || || || || |||| | |||| | |
Sbjct 2103 AAGCACA---TTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCA 2159
Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627
|||| ||||| |||| |||||| || | ||| | | | ||| | ||||||||| |
Sbjct 2160 ATAGGAAACAGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGG 2219
Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687
|||| | || | || || | ||| ||||| ||||||||| | | ||| |||||
Sbjct 2220 CATGTGTGAAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTT 2279
Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747
||| ||||| || || |||||||||||||| | || || | |||||||||||||
Sbjct 2280 CACCATGAATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGC 2339
Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802
||| | || | | ||| || || | |||||| ||||||||||| |||||
Sbjct 2340 CATTCAACTTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTA 2394
>seq22
Length=933496
Score = 246 bits (272), Expect = 3e-60
Identities = 481/704 (68%), Gaps = 10/704 (1%)
Strand=Plus/Minus
Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854
||| || ||||||| |||||| ||| | | |||||||| || || || || ||
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740
Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914
||||| ||||| || | ||||||||||| || || || || || | || || | |
Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT---TTC 329683
Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAA---GATGTTTAAACATCAAACATGCAAAATC 18971
|| || || || || | ||| | |||| ||||||| || ||||||||
Sbjct 329682 AATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATC 329623
Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031
||||||| ||| ||||| || || | |||||||| ||||| ||||||||||| ||
Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563
Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091
|| | ||| || | ||| || || |||||||| ||| |||||| || ||||| ||
Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503
Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCATTTCA 19150
|| ||||| || | || | ||| ||| || | | ||| ||| |||||| ||
Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCA-AAGTTGGCCGATTTCGATGAAATCCACGCCA 329444
Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210
|||||||||||||||| || ||| ||||| ||||| |||| ||| || | || |
Sbjct 329443 GTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTA-A 329385
Query 19211 TACGCTCATCTG-TATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269
| | | || ||| |||| ||||| ||| || |||| ||||||||||| |||||
Sbjct 329384 TCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325
Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329
| ||| || || || || |||||||| || || || | || ||||| || || |||||
Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265
Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389
| || | ||| || || |||||||| || || ||||| || ||||| |||||
Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205
Query 19390 AATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCT 19449
|| || || ||| ||||| ||||| ||| | |||||||| ||||||
Sbjct 329204 AAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCT 329145
Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
|| || | || || ||||| || ||||| || || || |||||
Sbjct 329144 TTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGC 329101
>seq59797
Length=1646
Score = 134 bits (148), Expect = 2e-26
Identities = 149/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056
|| ||||||||||| ||||| ||||||||||||| ||||| || || | |||||| ||
Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575
Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116
|| |||||||| ||||| ||||| ||||||||||| || ||||| || |||||||| ||
Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515
Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176
||| | || | | | || ||||| || | |||||| ||||| || || |
Sbjct 1514 CCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAATG 1455
Query 19177 CATGGCATTGTCTCTATAG 19195
||||| || || || ||||
Sbjct 1454 CATGGAATAGTTTCAATAG 1436
Score = 120 bits (132), Expect = 3e-22
Identities = 175/245 (71%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320
|| || || ||||| || || ||||| || ||||| |||||||||||||||| | |
Sbjct 1322 TCGGAGTGTATATTCTCCATCATAATCTGGAAACCGTAGAAACATCTTGCTTCTGCGAGC 1263
Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380
||||| || | |||||||||| | || ||||| || || || ||| || ||
Sbjct 1262 TGTACCTCGGAGGAGAATCTTTCGAGTAGGTTCTCATTGACAATACCGTCAGATGCGGCG 1203
Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA--ATG-TATTCCAA 19437
|| |||||||||||||| |||| || || || ||||| | ||| || | | |||
Sbjct 1202 AAGAATGCTAATACATGACTAATGAAGTGCTTCTCATCCTTGTTTATCTTGTTCTGCCAG 1143
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497
|| | ||||| || || || || | |||||| | ||||| |||||||| ||||||||
Sbjct 1142 TCCGTGATATCCTTCGACAAGTCCATTTCTTCTGCAGTCCAGAAAGAAGCTTCTGCTTTC 1083
Query 19498 TTATA 19502
|| ||
Sbjct 1082 TTGTA 1078
>seq840
Length=183542
Score = 89.7 bits (98), Expect = 6e-13
Identities = 178/265 (67%), Gaps = 8/265 (3%)
Strand=Plus/Minus
Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596
|| || || ||| |||| | |||| | ||||||||||| |||| |||||| ||
Sbjct 95079 ATACCATCAATAAAATCACCAGCCATAGTCAATAGAAAACAGGATGACAATTGCGGTTGG 95020
Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656
| ||| | | | ||| | ||||||||| ||||| | || | || || | |||
Sbjct 95019 CGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTGAAATAGCGTTCCGAAAGCAAG 94960
Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716
||||| |||| |||| | ||| ||||| ||| ||| | || || ||||||||
Sbjct 94959 TTATAAGTTTAAATAGTGGCATCAATATCTTCACCATGAATATCAATGGAAACACGCATC 94900
Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776
||||| | || || | ||||||||||||| ||| | || | | ||| |
Sbjct 94899 AACATGTGCTGCGGGCGTTCAACAATTTTGCCATTCAACTTGAGTAAATAGG-------- 94848
Query 48777 AATGTTTTAAAACCAAAATAGTTGT 48801
| |||||| ||||||||||| ||||
Sbjct 94847 AGTGTTTTGAAACCAAAATAATTGT 94823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561499825378800
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