Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq22 185 1e-41
seq59797 105 8e-18
>seq22
Length=933496
Score = 185 bits (204), Expect = 1e-41
Identities = 462/691 (67%), Gaps = 8/691 (1%)
Strand=Plus/Minus
Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069
||| || |||||||| || || | | ||||||||| | || || ||||| | || ||
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740
Query 37070 TGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128
|| | ||||| | ||||| | || ||| ||| | ||||| || || || | ||
Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTC-TTGTTCAATTTTAACAGCTTCAGCAATGATTTCAA 329681
Query 37129 CAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCAC 37188
|||| || | |||| | | | | || |||| | || |||||||| |
Sbjct 329680 TAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCGC 329621
Query 37189 AATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAAC 37248
||||||| ||||| || || || | |||||||| || || || || ||||||| |
Sbjct 329620 AATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGGC 329561
Query 37249 CTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTG 37308
| | ||| || | |||||| |||| |||||| ||| ||||||||| |||||||| |
Sbjct 329560 CCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAACCG 329501
Query 37309 CTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA-GAAATCCAttttttt 37367
| |||||||||| | |||| || ||||||| | || | |||||||| |
Sbjct 329500 CGGCAAATGCTATTATACGTTCGCC-AAAGTTGGCCGATTTCGATGAAATCCACGCCAGT 329442
Query 37368 GTCCAATCTGCCTTTAATTTAACA-CATTCAATTGTTTCAATTGCTTTTAAGA-GAAAGt 37425
| |||||| ||||| |||||| || || | || ||||| || || || | | ||
Sbjct 329441 GCCCAATCAGCCTTGCGCTTAACAGCAGGCA-TCGTCTCAATAGCATTGAACAAGTAATC 329383
Query 37426 ttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAA 37485
||| ||| | ||| | ||||| |||||||||| || || ||||||||||| || |
Sbjct 329382 CCTTTGCTTGCC-ATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGCA 329324
Query 37486 TATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT 37545
||| || || || || ||||| ||||| || || | || || | | |||||| || |
Sbjct 329323 CATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCTT 329264
Query 37546 TAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAA 37605
|| | | | ||||||||||||| || || ||||| || |||||||| || |
Sbjct 329263 GGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCCA 329204
Query 37606 GAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTT 37665
||| | || ||||| | ||||| | | | |||||||| |||||||
Sbjct 329203 AAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCTT 329144
Query 37666 TTGATAAATCAACTTCATCAACGGTCCAAAA 37696
| || | ||||| || || || ||||| ||
Sbjct 329143 TGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113
>seq59797
Length=1646
Score = 105 bits (116), Expect = 8e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 37212 ATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATT 37271
|| ||||||||||| || || || || ||||| |||||||| || || | ||| || ||
Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575
Query 37272 GCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTA 37331
| |||||| || ||||| |||||||||||||| || || ||||||||||| || | |
Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515
Query 37332 CCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACA 37391
|| || | || | | ||| ||||| || || ||| || || || ||||
Sbjct 1514 CCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAATG 1455
Query 37392 CATTCAATTGTTTCAATTGCTTTTAA 37417
||| ||| |||||||| || || ||
Sbjct 1454 CATGGAATAGTTTCAATAGCGTTGAA 1429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591675098786800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |