Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq22 185 1e-41 seq59797 105 8e-18 >seq22 Length=933496 Score = 185 bits (204), Expect = 1e-41 Identities = 462/691 (67%), Gaps = 8/691 (1%) Strand=Plus/Minus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| || |||||||| || || | | ||||||||| | || || ||||| | || || Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 37070 TGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128 || | ||||| | ||||| | || ||| ||| | ||||| || || || | || Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTC-TTGTTCAATTTTAACAGCTTCAGCAATGATTTCAA 329681 Query 37129 CAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCAC 37188 |||| || | |||| | | | | || |||| | || |||||||| | Sbjct 329680 TAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCGC 329621 Query 37189 AATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAAC 37248 ||||||| ||||| || || || | |||||||| || || || || ||||||| | Sbjct 329620 AATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGGC 329561 Query 37249 CTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTG 37308 | | ||| || | |||||| |||| |||||| ||| ||||||||| |||||||| | Sbjct 329560 CCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAACCG 329501 Query 37309 CTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA-GAAATCCAttttttt 37367 | |||||||||| | |||| || ||||||| | || | |||||||| | Sbjct 329500 CGGCAAATGCTATTATACGTTCGCC-AAAGTTGGCCGATTTCGATGAAATCCACGCCAGT 329442 Query 37368 GTCCAATCTGCCTTTAATTTAACA-CATTCAATTGTTTCAATTGCTTTTAAGA-GAAAGt 37425 | |||||| ||||| |||||| || || | || ||||| || || || | | || Sbjct 329441 GCCCAATCAGCCTTGCGCTTAACAGCAGGCA-TCGTCTCAATAGCATTGAACAAGTAATC 329383 Query 37426 ttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAA 37485 ||| ||| | ||| | ||||| |||||||||| || || ||||||||||| || | Sbjct 329382 CCTTTGCTTGCC-ATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGCA 329324 Query 37486 TATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT 37545 ||| || || || || ||||| ||||| || || | || || | | |||||| || | Sbjct 329323 CATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCTT 329264 Query 37546 TAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAA 37605 || | | | ||||||||||||| || || ||||| || |||||||| || | Sbjct 329263 GGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCCA 329204 Query 37606 GAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTT 37665 ||| | || ||||| | ||||| | | | |||||||| ||||||| Sbjct 329203 AAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCTT 329144 Query 37666 TTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | || | ||||| || || || ||||| || Sbjct 329143 TGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113 >seq59797 Length=1646 Score = 105 bits (116), Expect = 8e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 37212 ATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATT 37271 || ||||||||||| || || || || ||||| |||||||| || || | ||| || || Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575 Query 37272 GCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTA 37331 | |||||| || ||||| |||||||||||||| || || ||||||||||| || | | Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515 Query 37332 CCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACA 37391 || || | || | | ||| ||||| || || ||| || || || |||| Sbjct 1514 CCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAATG 1455 Query 37392 CATTCAATTGTTTCAATTGCTTTTAA 37417 ||| ||| |||||||| || || || Sbjct 1454 CATGGAATAGTTTCAATAGCGTTGAA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591675098786800