Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_017969.1 Length=108853 Score E Sequences producing significant alignments: (Bits) Value seq85787 125 5e-24 seq81708 122 6e-23 >seq85787 Length=1013 Score = 125 bits (138), Expect = 5e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 27053 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27112 |||||| || ||| || || ||||| |||| || || ||||| || || ||| || | Sbjct 588 ATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCG 647 Query 27113 CATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 27172 || || || ||||| |||||||| || |||||||||| ||| |||||||| || |||| Sbjct 648 AGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGAT 707 Query 27173 GTTTCTGCGCATCCAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCAC 27232 ||| | |||||||| ||| ||||| | | ||| || || || || || ||||||| Sbjct 708 GTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCAC 767 Query 27233 CTTCGAT 27239 ||||||| Sbjct 768 CTTCGAT 774 >seq81708 Length=1085 Score = 122 bits (134), Expect = 6e-23 Identities = 133/175 (76%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 27067 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27126 |||||||||||| ||||||| || ||| || || | ||||| || ||||| || || Sbjct 251 GTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGCACG 310 Query 27127 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 27185 || ||||| || || || ||||||||||| ||||||||||| ||||| ||| ||||| Sbjct 311 GCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCATCT 370 Query 27186 -CAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCACCTTCGAT 27239 | || | | ||||| | | ||| || || || ||||||||||||||||| || Sbjct 371 TCCAACGTT--TCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAAT 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347836994534180