Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq41539 96.9 1e-15 >seq41539 Length=2700 Score = 96.9 bits (106), Expect = 1e-15 Identities = 274/410 (67%), Gaps = 22/410 (5%) Strand=Plus/Plus Query 25238 TATCAGCAAGAAGCTCAATGCCATGGGAATCAAAACGGCTCTGGATCT--CTCAGAGCAA 25295 ||||| |||||||| || | ||||| |||| || || ||| | || | |||| || Sbjct 1487 TATCA--AAGAAGCTGAACACGATGGGTATCACCACCGCCCTGCAGCTGGCGCAGA-CA- 1542 Query 25296 AGCACCTGGA--TTATCCGCAAGCACTTTAATGTGGTACTGGAACGAACGGTCCGGGAGC 25353 |||| || ||||||||||| | || | ||||| || || || ||||| || || | Sbjct 1543 --CACCCGGCATTTATCCGCAAGAATTTCAGCGTGGTCCTCGAGCGCACGGTGCGCGAAC 1600 Query 25354 TGCGTGGCGAACCATGTCTGGATCTGGAGGAGTTTGCGCC---GGCAAAGCAGGAAATCG 25410 | || ||| ||| | ||||| || |||||| |||||||||| | || | Sbjct 1601 TCAACGGTGAAAGCTGTATCAGCCTGGAAGA---TGCGCCACCGGCAAAGCAGCAGATTG 1657 Query 25411 TCTGCAGCCGGTCATTCGGAGAACGCGTTACCGAATACGAACAGATGCGCCAGGCTATCT 25470 ||||||||||| || || |||||| | || || || || |||||| ||||| ||| Sbjct 1658 TCTGCAGCCGGAGTTTTGGTGAACGCATCACGGACTATGACGCGATGCGGCAGGCGGTCT 1717 Query 25471 G-CAGTTATGCTGCCCGTGGTGCTGAAAAACTACGTGGTGAGCACCAGTATTGCCGTTTT 25529 | ||| ||||| | || | || || || || || || || | |||| ||| | Sbjct 1718 GTCAG-TATGCGGAACGCGCGGCGGAGAAGCTGCGCGGCGAACGGCAGTTCTGCAGGCAC 1776 Query 25530 ATCTCGGCGTTCGTCAAGACGTCACCGTTCGCGCTTAACGAGCCGTATTACGGCAATTGC 25589 ||| | ||| || || || || |||||||| || || || || ||||| ||| Sbjct 1777 ATCGGTGTGTTTGTGAAAACCTCGCCGTTCGCTGCGAATGAACCTTACTACGGGAATATG 1836 Query 25590 GCGTCAGTGAAG--CTTCTCACACCCACGCATGATTCCCGCGACATCATC 25637 || ||| |||| || | || ||||| ||| |||| || |||||| Sbjct 1837 GC--CAGCGAAGGCCTGCCGGTGCCGACGCAGGATACCCGGGATATCATC 1884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156887963570120