Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_018279.1
Length=49116
Score E
Sequences producing significant alignments: (Bits) Value
seq41539 96.9 1e-15
>seq41539
Length=2700
Score = 96.9 bits (106), Expect = 1e-15
Identities = 274/410 (67%), Gaps = 22/410 (5%)
Strand=Plus/Plus
Query 25238 TATCAGCAAGAAGCTCAATGCCATGGGAATCAAAACGGCTCTGGATCT--CTCAGAGCAA 25295
||||| |||||||| || | ||||| |||| || || ||| | || | |||| ||
Sbjct 1487 TATCA--AAGAAGCTGAACACGATGGGTATCACCACCGCCCTGCAGCTGGCGCAGA-CA- 1542
Query 25296 AGCACCTGGA--TTATCCGCAAGCACTTTAATGTGGTACTGGAACGAACGGTCCGGGAGC 25353
|||| || ||||||||||| | || | ||||| || || || ||||| || || |
Sbjct 1543 --CACCCGGCATTTATCCGCAAGAATTTCAGCGTGGTCCTCGAGCGCACGGTGCGCGAAC 1600
Query 25354 TGCGTGGCGAACCATGTCTGGATCTGGAGGAGTTTGCGCC---GGCAAAGCAGGAAATCG 25410
| || ||| ||| | ||||| || |||||| |||||||||| | || |
Sbjct 1601 TCAACGGTGAAAGCTGTATCAGCCTGGAAGA---TGCGCCACCGGCAAAGCAGCAGATTG 1657
Query 25411 TCTGCAGCCGGTCATTCGGAGAACGCGTTACCGAATACGAACAGATGCGCCAGGCTATCT 25470
||||||||||| || || |||||| | || || || || |||||| ||||| |||
Sbjct 1658 TCTGCAGCCGGAGTTTTGGTGAACGCATCACGGACTATGACGCGATGCGGCAGGCGGTCT 1717
Query 25471 G-CAGTTATGCTGCCCGTGGTGCTGAAAAACTACGTGGTGAGCACCAGTATTGCCGTTTT 25529
| ||| ||||| | || | || || || || || || || | |||| ||| |
Sbjct 1718 GTCAG-TATGCGGAACGCGCGGCGGAGAAGCTGCGCGGCGAACGGCAGTTCTGCAGGCAC 1776
Query 25530 ATCTCGGCGTTCGTCAAGACGTCACCGTTCGCGCTTAACGAGCCGTATTACGGCAATTGC 25589
||| | ||| || || || || |||||||| || || || || ||||| |||
Sbjct 1777 ATCGGTGTGTTTGTGAAAACCTCGCCGTTCGCTGCGAATGAACCTTACTACGGGAATATG 1836
Query 25590 GCGTCAGTGAAG--CTTCTCACACCCACGCATGATTCCCGCGACATCATC 25637
|| ||| |||| || | || ||||| ||| |||| || ||||||
Sbjct 1837 GC--CAGCGAAGGCCTGCCGGTGCCGACGCAGGATACCCGGGATATCATC 1884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156887963570120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |