Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq30525 174 2e-38 >seq30525 Length=4329 Score = 174 bits (192), Expect = 2e-38 Identities = 533/811 (66%), Gaps = 10/811 (1%) Strand=Plus/Minus Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCG 197082 || ||||||||| | ||||| || || ||||| || ||| | || || | | || Sbjct 2993 AGGTCCTCGTCGGTGAAGCCGGTGCCAATCTTGCAGATGCTCTGAAACTCCTCGCTCTCC 2934 Query 197083 GGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTG 197142 | ||| |||||||| | ||| | |||||| || || | ||| ||| || | Sbjct 2933 TCGTCGTAGCAGGCGAGGAGGAAGCCCCCGTAGACGCCGGTCCGCTTGCCCTTGCCCAGG 2874 Query 197143 AAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTC 197202 || | || || |||||| || || ||||||| || || |||| ||| || |||||| Sbjct 2873 TAGGCGCCAATGGGCACCAGGTCGAGCGTGTCGCCGACGCCCTCCAGGTAGTCCTTCTTC 2814 Query 197203 AGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTC 197262 ||||||||||| | | || | |||||| ||||| ||||| |||| ||| ||| ||| Sbjct 2813 AGTTTGAGCCACTTGCGGGAGCGCTTGGCGATCTCATAGGTGGCGTCGTCGTGCAGCGTC 2754 Query 197263 TTGATCATCAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGTTTGAATGTCT 197322 ||||||||||| |||||||| | ||| | | || | | ||| |||||| | Sbjct 2753 TTGATCATCAAACCCTCGCACTTGCTCTTGATCGACTCCTCGAGGAACTCCTGAATGGCG 2694 Query 197323 TCCGGTTTGTTAGACATCATATCTCG-CGCGAAGATAAATTGTCCCTCCACCTCCGTAAA 197381 ||| | | | | || | || | || | ||||| | ||||||||||| | || Sbjct 2693 TCCACGTCGCT-CAGGTCCTTGCTGGTGGCCAGCATAAACTTGCCCTCCACCTCGTTGAA 2635 Query 197382 ACAACTCCTCATAAGTTCCCTCCTCTCTCTGAAGCTCTTGTTGACCTGAGACACTCCGTT 197441 | | | || || | || ||| || |||| ||||| | ||| | | ||| Sbjct 2634 GCTCTGGCGAAGCAGCTCTCGCCGCTCCGAGAGATCCTTGGTGACCAGCGACTCGCTGTT 2575 Query 197442 CATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCCTTGAC 197501 || ||||| || |||||| ||||||| ||| || | ||||| ||||| ||| | ||| Sbjct 2574 CAGGTACAGCAGGTCAAAGGCAAAGAGGCAGACGCGAACGGTGATCTCACTTTCGTCGAC 2515 Query 197502 ATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTCAACGTC 197561 | || || |||| || |||| ||| ||||| || |||||||| | || || Sbjct 2514 GTTCTTGCGCTTTCGAGTGCTCAGCACTTGGAAGGGCAGAATCTGCTTGGTGGAGACATC 2455 Query 197562 CCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCGTTGATCGAT-TGGG 197620 | || || || ||| ||| | ||| || |||| | ||| | || | | Sbjct 2454 AAAGGCGACCGCTTCACAGTCGAGGATAAAGTTGGTCACATTGGGGCTGA-CAATCTCGT 2396 Query 197621 GAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATTTTCAGAGTTGCGGCTAAAAA 197680 ||| | |||| ||||| |||||||| || ||||| || || ||| ||||| | | Sbjct 2395 GAATCAGCTTGACGATGTCAGGGTACTTTTCAGTGTTGTTCTCCTGGTTTCGGCTGTAGA 2336 Query 197681 TTCTAATCTTCCCT-CCCTCCATGTAGTGAATCTGAGCCCTCTCTCCGTCATACTTGTAC 197739 | || ||| | | || | ||||||||| |||| ||| ||||| ||||||||| Sbjct 2335 -TGTAGGTGTCCTTGTCGTCGTTCAGGTGAATCTGCGCCCGCTCACCGTCGTACTTGTAC 2277 Query 197740 TCGCAAGAAAAGACAGCTCCTTTCAGCTTGCT-CATCACGTCTTCGATTCCCGTGGTAGG 197798 ||||| | || || || |||| | ||| || ||||| | | |||| |||| || Sbjct 2276 TCGCAGGTGAACTTGGCGCC-TTCAAGTCGCTCCAGGACGTCCTGAACTCCCTTGGTCGG 2218 Query 197799 AGTG-GCGAGCATAGGTTTCATGGGAATTCC 197828 ||| || ||||| || |||| ||||| || Sbjct 2217 -GTGCGCCAGCATTGGCTTCAGCGGAATGCC 2188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 675996448069600