Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_018874.1
Length=211518
Score E
Sequences producing significant alignments: (Bits) Value
seq30525 174 2e-38
>seq30525
Length=4329
Score = 174 bits (192), Expect = 2e-38
Identities = 533/811 (66%), Gaps = 10/811 (1%)
Strand=Plus/Minus
Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCG 197082
|| ||||||||| | ||||| || || ||||| || ||| | || || | | ||
Sbjct 2993 AGGTCCTCGTCGGTGAAGCCGGTGCCAATCTTGCAGATGCTCTGAAACTCCTCGCTCTCC 2934
Query 197083 GGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTG 197142
| ||| |||||||| | ||| | |||||| || || | ||| ||| || |
Sbjct 2933 TCGTCGTAGCAGGCGAGGAGGAAGCCCCCGTAGACGCCGGTCCGCTTGCCCTTGCCCAGG 2874
Query 197143 AAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTC 197202
|| | || || |||||| || || ||||||| || || |||| ||| || ||||||
Sbjct 2873 TAGGCGCCAATGGGCACCAGGTCGAGCGTGTCGCCGACGCCCTCCAGGTAGTCCTTCTTC 2814
Query 197203 AGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTC 197262
||||||||||| | | || | |||||| ||||| ||||| |||| ||| ||| |||
Sbjct 2813 AGTTTGAGCCACTTGCGGGAGCGCTTGGCGATCTCATAGGTGGCGTCGTCGTGCAGCGTC 2754
Query 197263 TTGATCATCAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGTTTGAATGTCT 197322
||||||||||| |||||||| | ||| | | || | | ||| |||||| |
Sbjct 2753 TTGATCATCAAACCCTCGCACTTGCTCTTGATCGACTCCTCGAGGAACTCCTGAATGGCG 2694
Query 197323 TCCGGTTTGTTAGACATCATATCTCG-CGCGAAGATAAATTGTCCCTCCACCTCCGTAAA 197381
||| | | | | || | || | || | ||||| | ||||||||||| | ||
Sbjct 2693 TCCACGTCGCT-CAGGTCCTTGCTGGTGGCCAGCATAAACTTGCCCTCCACCTCGTTGAA 2635
Query 197382 ACAACTCCTCATAAGTTCCCTCCTCTCTCTGAAGCTCTTGTTGACCTGAGACACTCCGTT 197441
| | | || || | || ||| || |||| ||||| | ||| | | |||
Sbjct 2634 GCTCTGGCGAAGCAGCTCTCGCCGCTCCGAGAGATCCTTGGTGACCAGCGACTCGCTGTT 2575
Query 197442 CATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCCTTGAC 197501
|| ||||| || |||||| ||||||| ||| || | ||||| ||||| ||| | |||
Sbjct 2574 CAGGTACAGCAGGTCAAAGGCAAAGAGGCAGACGCGAACGGTGATCTCACTTTCGTCGAC 2515
Query 197502 ATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTCAACGTC 197561
| || || |||| || |||| ||| ||||| || |||||||| | || ||
Sbjct 2514 GTTCTTGCGCTTTCGAGTGCTCAGCACTTGGAAGGGCAGAATCTGCTTGGTGGAGACATC 2455
Query 197562 CCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCGTTGATCGAT-TGGG 197620
| || || || ||| ||| | ||| || |||| | ||| | || | |
Sbjct 2454 AAAGGCGACCGCTTCACAGTCGAGGATAAAGTTGGTCACATTGGGGCTGA-CAATCTCGT 2396
Query 197621 GAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATTTTCAGAGTTGCGGCTAAAAA 197680
||| | |||| ||||| |||||||| || ||||| || || ||| ||||| | |
Sbjct 2395 GAATCAGCTTGACGATGTCAGGGTACTTTTCAGTGTTGTTCTCCTGGTTTCGGCTGTAGA 2336
Query 197681 TTCTAATCTTCCCT-CCCTCCATGTAGTGAATCTGAGCCCTCTCTCCGTCATACTTGTAC 197739
| || ||| | | || | ||||||||| |||| ||| ||||| |||||||||
Sbjct 2335 -TGTAGGTGTCCTTGTCGTCGTTCAGGTGAATCTGCGCCCGCTCACCGTCGTACTTGTAC 2277
Query 197740 TCGCAAGAAAAGACAGCTCCTTTCAGCTTGCT-CATCACGTCTTCGATTCCCGTGGTAGG 197798
||||| | || || || |||| | ||| || ||||| | | |||| |||| ||
Sbjct 2276 TCGCAGGTGAACTTGGCGCC-TTCAAGTCGCTCCAGGACGTCCTGAACTCCCTTGGTCGG 2218
Query 197799 AGTG-GCGAGCATAGGTTTCATGGGAATTCC 197828
||| || ||||| || |||| ||||| ||
Sbjct 2217 -GTGCGCCAGCATTGGCTTCAGCGGAATGCC 2188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 675996448069600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |