Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq38 120 2e-22 seq280 111 1e-19 seq21746 93.3 3e-14 seq322 86.0 5e-12 seq76387 84.2 2e-11 >seq38 Length=776604 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 9059 CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCA 9118 ||||| ||||| || || | |||||||| ||||| ||||| | || || |||| Sbjct 253972 CCAGTTCAGGATAGAAAATGCGCTCACAAATAAATTGTGCAATGCGATCGCCACGTTTCA 253913 Query 9119 CGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCT 9178 | | ||||| | || ||||||||||| ||||| || |||| ||| || | ||| |||| Sbjct 253912 CCTCGAAGTCAGCATCTGAATGATTGAAAAGCACAACGCCCAAGTTTCCACGGTAGTCCT 253853 Query 9179 CATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCG 9238 | || | ||||| ||||| || || ||||||| ||| || || ||||| || || || | Sbjct 253852 CGTCTACGACACCGGCACCAACATCTATGAAGTTCTTAACAGCCAGTCCCGAACGTGGAG 253793 Query 9239 CGATTCGACCGTAGCATCCCACCGGTAATTGCAC 9272 ||| || ||||| ||||| | || | ||| || Sbjct 253792 CGACCCGGCCGTAAGATCCCTCAGGCACTTGTAC 253759 >seq280 Length=341618 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||||||| || || || || ||||||||||| || | Sbjct 104655 CGCCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGG 104714 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || |||| |||||||| ||||||||||| |||| ||||||||||| | | Sbjct 104715 ACAAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAG 104774 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| || || || ||| ||| | | | ||||||| ||| | Sbjct 104775 GAATACCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAA 104834 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || ||||| || |||| || || || || |||||||| Sbjct 104835 CCTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| ||||| || ||||| | || || || ||||||||||| ||||| Sbjct 106253 CCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGAC 106312 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||||||||| || || || || | || |||||||| | || Sbjct 106313 AATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGG 106372 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| || ||| ||| | | | || || | ||| ||| Sbjct 106373 ATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACC 106432 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| |||||||||||||| || ||||||||||| Sbjct 106433 TCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| ||||| || ||||| | || || || ||||||||||| ||||| Sbjct 114499 CCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGAC 114558 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||||||||| || || || || | || |||||||| | || Sbjct 114559 AATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGG 114618 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| || ||| ||| | | | || || | ||| ||| Sbjct 114619 ATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACC 114678 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| |||||||||||||| || ||||||||||| Sbjct 114679 TCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| || || ||| ||||| || || ||||| || | | | || Sbjct 104894 AGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGG 104953 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || | ||||||||||| | || | || || Sbjct 104954 CCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCT 105013 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | ||||||| ||| ||||||| || Sbjct 105014 TTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTG 105073 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||| || || ||||| ||||| Sbjct 105074 ATGGTTTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111 >seq21746 Length=7614 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| |||||||| ||||| || || | | | ||| Sbjct 2413 AGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGA 2354 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| ||||| || |||| || |||||||| | || | || || Sbjct 2353 CCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCT 2294 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || || ||| | | || || || | ||| ||||||| || Sbjct 2293 TTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTG 2234 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTACGTGTAT 48781 || || || ||||| | ||||| || ||||||||||| | ||| ||| ||| Sbjct 2233 ATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCAT--TTTGTTCGTCTAT 2183 >seq322 Length=316913 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| ||||| | || ||||||| || || ||||||||||||||||| | | Sbjct 56202 CCTCCCCTGAGCCGAAGTACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGCT 56261 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | |||| | || || || ||||| || || || || || ||||||||||| | || Sbjct 56262 AAGGTTCGCCCATCTTCTAATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGGG 56321 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || || ||| | | | || || | ||| ||| Sbjct 56322 ATCCCTTCCTTGTCTTGAATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAACC 56381 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || || ||||| | || || || ||||| ||||| Sbjct 56382 TCAAGAGTAATAGTCTTGCCCGTTAGGGTCTTAACGAAAATTTGCAT 56428 >seq76387 Length=1185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 48531 TAGTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTG 48590 |||| | |||||| | || || | |||| || || ||| ||| ||||| || ||| Sbjct 180 TAGTTGCTGCCGCCGCGCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTG 239 Query 48591 TAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGA 48650 || || || || | || |||| || | |||||| || || || ||||| ||||| || Sbjct 240 TAGTCCGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGG 299 Query 48651 TCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC 48710 |||| ||||| |||||||||||| ||||| || ||| | | | || Sbjct 300 TCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATGGTGTCGCTG 359 Query 48711 GCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||||||||| | || ||||| || || || | || || || || |||||||| Sbjct 360 GGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380535219184410