Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq38 120 2e-22
seq280 111 1e-19
seq21746 93.3 3e-14
seq322 86.0 5e-12
seq76387 84.2 2e-11
>seq38
Length=776604
Score = 120 bits (132), Expect = 2e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 9059 CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCA 9118
||||| ||||| || || | |||||||| ||||| ||||| | || || ||||
Sbjct 253972 CCAGTTCAGGATAGAAAATGCGCTCACAAATAAATTGTGCAATGCGATCGCCACGTTTCA 253913
Query 9119 CGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCT 9178
| | ||||| | || ||||||||||| ||||| || |||| ||| || | ||| ||||
Sbjct 253912 CCTCGAAGTCAGCATCTGAATGATTGAAAAGCACAACGCCCAAGTTTCCACGGTAGTCCT 253853
Query 9179 CATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCG 9238
| || | ||||| ||||| || || ||||||| ||| || || ||||| || || || |
Sbjct 253852 CGTCTACGACACCGGCACCAACATCTATGAAGTTCTTAACAGCCAGTCCCGAACGTGGAG 253793
Query 9239 CGATTCGACCGTAGCATCCCACCGGTAATTGCAC 9272
||| || ||||| ||||| | || | ||| ||
Sbjct 253792 CGACCCGGCCGTAAGATCCCTCAGGCACTTGTAC 253759
>seq280
Length=341618
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || || | ||||||||| || || || || ||||||||||| || |
Sbjct 104655 CGCCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGG 104714
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| | | | || |||| |||||||| ||||||||||| |||| ||||||||||| | |
Sbjct 104715 ACAAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAG 104774
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| || ||||| || || || ||| ||| | | | ||||||| ||| |
Sbjct 104775 GAATACCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAA 104834
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| || || ||||| || |||| || || || || ||||||||
Sbjct 104835 CCTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| ||||| || ||||| | || || || ||||||||||| |||||
Sbjct 106253 CCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGAC 106312
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | || | || ||||||||||| || || || || | || |||||||| | ||
Sbjct 106313 AATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGG 106372
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || ||| || ||| ||| | | | || || | ||| |||
Sbjct 106373 ATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACC 106432
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || ||||| |||||||||||||| || |||||||||||
Sbjct 106433 TCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| ||||| || ||||| | || || || ||||||||||| |||||
Sbjct 114499 CCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGAC 114558
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | || | || ||||||||||| || || || || | || |||||||| | ||
Sbjct 114559 AATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGG 114618
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || ||| || ||| ||| | | | || || | ||| |||
Sbjct 114619 ATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACC 114678
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || ||||| |||||||||||||| || |||||||||||
Sbjct 114679 TCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||||||| || || ||| ||||| || || ||||| || | | | ||
Sbjct 104894 AGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGG 104953
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| ||||| || || | ||||||||||| | || | || ||
Sbjct 104954 CCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCT 105013
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | ||||||| ||| ||||||| ||
Sbjct 105014 TTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTG 105073
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||| ||| || || ||||| |||||
Sbjct 105074 ATGGTTTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111
>seq21746
Length=7614
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||| |||||||| ||||| || || | | | |||
Sbjct 2413 AGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGA 2354
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| ||||| ||||| || |||| || |||||||| | || | || ||
Sbjct 2353 CCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCT 2294
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || || || || ||| | | || || || | ||| ||||||| ||
Sbjct 2293 TTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTG 2234
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTACGTGTAT 48781
|| || || ||||| | ||||| || ||||||||||| | ||| ||| |||
Sbjct 2233 ATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCAT--TTTGTTCGTCTAT 2183
>seq322
Length=316913
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| ||||| | || ||||||| || || ||||||||||||||||| | |
Sbjct 56202 CCTCCCCTGAGCCGAAGTACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGCT 56261
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| |||| | || || || ||||| || || || || || ||||||||||| | ||
Sbjct 56262 AAGGTTCGCCCATCTTCTAATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGGG 56321
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||| || || ||| | | | || || | ||| |||
Sbjct 56322 ATCCCTTCCTTGTCTTGAATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAACC 56381
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||||| || || ||||| | || || || ||||| |||||
Sbjct 56382 TCAAGAGTAATAGTCTTGCCCGTTAGGGTCTTAACGAAAATTTGCAT 56428
>seq76387
Length=1185
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 48531 TAGTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTG 48590
|||| | |||||| | || || | |||| || || ||| ||| ||||| || |||
Sbjct 180 TAGTTGCTGCCGCCGCGCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTG 239
Query 48591 TAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGA 48650
|| || || || | || |||| || | |||||| || || || ||||| ||||| ||
Sbjct 240 TAGTCCGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGG 299
Query 48651 TCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC 48710
|||| ||||| |||||||||||| ||||| || ||| | | | ||
Sbjct 300 TCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATGGTGTCGCTG 359
Query 48711 GCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
| ||||||||| | || ||||| || || || | || || || || ||||||||
Sbjct 360 GGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380535219184410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |