Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq52999 1714 0.0 >seq52999 Length=1923 Score = 1714 bits (1900), Expect = 0.0 Identities = 1540/1918 (80%), Gaps = 20/1918 (1%) Strand=Plus/Minus Query 12548 ATGGGAGAGCTGTGATGCACTGCGGCACGGTAGGTTCGCGCCAGCCCGTCAAAGCTGACC 12607 ||||| |||||||||||||| ||||| ||| | || |||||||||||||||| ||| || Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849 Query 12608 GGCGGCTCATACCAGCGGTCCATCTGCACGCATTCCACATAGTCCAGCAGCTCGCGGCGG 12667 || || ||||||||||| || | ||||| ||||| ||||||||||| ||||||||| Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789 Query 12668 TCCAGCACCGGGATTGGATCACCAAAGCTGAAAGCCTCGGCAGTTACGTCTGC--GT--T 12723 |||||||||||||| || || |||||| | || ||||| | | | | | || || | Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGACGCTGCCCC-GCTGGTCAT 1730 Query 12724 TTTAGGCGCCATATCTTCTGTTGGCGTTG--TGCTGGTTAAGGCTTC-GAGCTCACTCAT 12780 ||| || | | | | | | || ||| ||| || | | | | | ||||| Sbjct 1729 GTTATCCGGC-----TGCGGCACGGGCTGCGTGCGGGTGC-GGTTCCTGCGTTTGCTCAT 1676 Query 12781 CAAAAAATCTCCACAATGTTGCTG-GTATTGGCGGATTCGCCCTGCAGCGGTTCGTTAAA 12839 || |||||||||||||||| ||| || | || | | ||||||||||| ||||| Sbjct 1675 CAGTAAATCTCCACAATGTT-CTGCGTGTGTGCCGCCTGTCCCTGCAGCGGCTCGTTTGC 1617 Query 12840 CAGTGCATGCATCGTTGCCCAGGCCAAATCTGCGTGGCTGGCCTCTTCGCTGCGGCTGGC 12899 ||| || ||||| || |||||||| ||||| |||||||| | || ||||||||||||| Sbjct 1616 CAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCTGGT 1557 Query 12900 TTCATAGGTTGGACGGTTGCCGCTGGCGGTGGTGGCGCGGCGGATAGCCATAAAGGACTG 12959 ||||||||| ||||||||||||||||| |||||||| |||||||| |||||| ||||| Sbjct 1556 TTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGACTG 1497 Query 12960 CGCAATGTCGGTGTGCCCAGCGTCAAACTCCAGACGGCGG-TGGCTGATAATGTCGTACG 13018 ||| |||||| ||| | |||||||||||||| || | | |||| ||| ||||||| | Sbjct 1496 CGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGC-GATGGTGTCGTAAG 1438 Query 13019 CCTTGAGCACCAGGGCATTTTTGACGTTAGGGTTGTAGACAAACTCCCGCACGGCAGGAA 13078 |||| ||||||||||| ||||| ||||| ||||| |||||||||||| ||| || | Sbjct 1437 CCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGCGGGA 1378 Query 13079 AGAACGCTTTTACGTTCTCATAAACACCGTGCCCGACGCCGGTCGAGTCGATGCCGATAT 13138 |||| ||||| || ||||| || || || ||||||||||||| |||||||||||||||| Sbjct 1377 AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATAT 1318 Query 13139 AGGTCACGTTGTACTGCTGCGTCAGTTTTTTGATAGCATCAGCCTGGGCGCGAAAGTCCA 13198 |||| ||||| |||||||||||||| | |||| || |||||||| || || ||||||| Sbjct 1317 AGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCA 1258 Query 13199 TCCCGCGCCACTGATGACGCTCCAGAATTCGGAACTTCCCGCCAGGTACAGTTGGCGGTG 13258 ||||||||||||| |||||||| || || |||||||| ||||| || || | ||||||| Sbjct 1257 TCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTG 1198 Query 13259 CCATAACCACGCAGCCTGCGCTGTCACCGTTCTGCGTACCTTTTGCCGGGTCATAACCGA 13318 |||| |||||||| || |||||||| ||||||||||| || || || ||||| || |||| Sbjct 1197 CCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGA 1138 Query 13319 TCCACACTTCGCGCCAGCCAAACGGGCGCAGCGCCAGCGCCTGAAAATCGGTCCAGACTT 13378 |||||||||| |||||| |||||||||||||||||||||| ||| ||||||||||||| Sbjct 1137 TCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCCAGACTT 1078 Query 13379 CCCAGCTGTCCACCATGCACGCCTGCAGCTCGCTGAGCGGGAACACGGACGCGAGATCGT 13438 ||||||||||||||||||| ||||||| | ||| |||| || ||||| ||||||| Sbjct 1077 CCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGT 1018 Query 13439 CCACGAACTCACACATCAGCAGGTTCTGGTATTCGTCCGGGCTGTACTCCATGCGCAGCT 13498 ||| || | |||||||||||||||||||| || ||||||||||| | ||||||||| Sbjct 1017 CCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTGCGCAGCT 958 Query 13499 GGTCGAGGTCGAACAGGTTACAGCCGCCGCGCACCGCATCCTCCACGGTGACGATCTGGC 13558 | || ||||| ||||||| ||||||||||||||||||||| || |||||||||||||||| Sbjct 957 GCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGC 898 Query 13559 GGTACTGCCCGTCAGGGCAGAGCAGGCCGCGCGCAAGGTTGCTG-TGGGTCAGGTTAATA 13617 | |||| ||||| |||||| | ||| ||| || ||| ||| | |||| |||| Sbjct 897 GAAACTGGCCGTCTTCGCAGAGGCGACCG-GCGGCCAGTGACTGATGGCTGAGGTCAATA 839 Query 13618 TCCACCTTGTCCGCTTTGGCACGGCCCCGGTTAAACAGCGCACCGGACCAGAACGGATAA 13677 || ||| ||| |||||||| |||||| ||| ||| ||| |||||||||||||||||| Sbjct 838 TCAACCCGGTCAGCTTTGGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAG 779 Query 13678 GCACTGTGGGTCAGGCTGGAGGGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATG 13737 || ||||| || |||||||| || |||||||| ||||||| ||||| || ||||| | Sbjct 778 GCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGC 719 Query 13738 GCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTTGGTATCCAGAAATATTCATCC 13797 ||||| ||||| |||||||| |||||||||| || || || |||||||||||||||||| Sbjct 718 GCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAATATTCATCC 659 Query 13798 AGGTACAGATTACCGTGATAGCTCTGCGCCGTGCGGGCGTTGGTGCCGAGAAAGTACAAA 13857 ||||||||||| ||||||||||||||||| ||||||||||||||||| || || |||| Sbjct 658 AGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGG 599 Query 13858 GCGGCCCCATTGGGTAACACCATGGGATCGCCTTTCAGCTCAACATCCACCTCTTTTGCA 13917 || || || | | ||| || ||||| ||||| || || |||||||| ||| Sbjct 598 CACGCACCGTTACTGAGCGTCATCGGGTCGCCCTTCAGGTCTACGTCCACCTCGCGGGCA 539 Query 13918 AAGTCGATGATGTACTGCTTAAAGACGTGCGCCTGTGCCTTACTGGCAGAAAGGAAAATC 13977 || || |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| Sbjct 538 AATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATC 479 Query 13978 TGGTTGCGTCCGGTCAGCAGGGCGTCAATCAATGCTTCACGGGCAAAATAAAACGTGGCG 14037 || ||||| ||||| ||| || || |||| || || ||||||||| | || ||||| Sbjct 478 TGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCC 419 Query 14038 CCAATCTGGCGCGACTTGAGCAGGTTGCGGATGCGGTTTGTTTTCCCGGCTTCAAACCAG 14097 ||||||||||||||||| ||||||||||||| | || | |||||||| || |||| Sbjct 418 CCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTCCCGGCCTCCCACCAC 359 Query 14098 TGACGCTGATAGTCGAACATAGAGGCGTGGAAGACTTCTTCCAGCTTTTCGATCTGTTCA 14157 || ||||| ||| ||||||| ||| ||||||| || || | |||||| || |||||||| Sbjct 358 TGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCG 299 Query 14158 TCAGTGAAAACATTCTTTTCCGGCTGACGGCGTGGGCCTTTGTTGCGGTTGGCGACGTTA 14217 || |||| | ||||||||||| | || ||||| ||||||||||| | ||||| Sbjct 298 TCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCTTGTTGCGGTTCTCCACGTTC 239 Query 14218 GGGTTTAAGTCGGCTTCGTTGCCACCATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCC 14277 || || | ||| ||||| ||||| |||||| | || ||||||||||| || |||||||| Sbjct 238 GGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGCCGATCCGGGCATGGCGCTCG 179 Query 14278 GACTGGCGCGCCAGCAGGTCAATTTCTTTGAAATCTTTCCCTTCTTTATGCTCCTTCATA 14337 ||||| |||||||||||||| ||||| ||||| || || ||||| || ||||||||||| Sbjct 178 GACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTTCCTTCTGCTCCTTCATG 119 Query 14338 ATGAGCTGGCAGTAGCGTGCGGCGGTGGTGAGCTGCATCTGATCCAGCGGCCCATAGTCG 14397 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 118 ATGAGCTGGCAGTAGCGTGCGGCGGTGGTCAGCTGCATCTGATCCAGCGGGCCATAGTCG 59 Query 14398 CCCCACTTGTCGCGTTTTTTCCAGCTGTGAACGGTTGCAACTTTTTCGCCCAGCATTT 14455 |||||||| ||||| || |||||||||||||||||||| ||| || |||||||||| Sbjct 58 CCCCACTTATCGCGCTTCTTCCAGCTGTGAACGGTTGCGGGTTTCTCTCCCAGCATTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108940562176660