Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_019488.1
Length=34117
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 1714 0.0
>seq52999
Length=1923
Score = 1714 bits (1900), Expect = 0.0
Identities = 1540/1918 (80%), Gaps = 20/1918 (1%)
Strand=Plus/Minus
Query 12548 ATGGGAGAGCTGTGATGCACTGCGGCACGGTAGGTTCGCGCCAGCCCGTCAAAGCTGACC 12607
||||| |||||||||||||| ||||| ||| | || |||||||||||||||| ||| ||
Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849
Query 12608 GGCGGCTCATACCAGCGGTCCATCTGCACGCATTCCACATAGTCCAGCAGCTCGCGGCGG 12667
|| || ||||||||||| || | ||||| ||||| ||||||||||| |||||||||
Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789
Query 12668 TCCAGCACCGGGATTGGATCACCAAAGCTGAAAGCCTCGGCAGTTACGTCTGC--GT--T 12723
|||||||||||||| || || |||||| | || ||||| | | | | | || || |
Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGACGCTGCCCC-GCTGGTCAT 1730
Query 12724 TTTAGGCGCCATATCTTCTGTTGGCGTTG--TGCTGGTTAAGGCTTC-GAGCTCACTCAT 12780
||| || | | | | | | || ||| ||| || | | | | | |||||
Sbjct 1729 GTTATCCGGC-----TGCGGCACGGGCTGCGTGCGGGTGC-GGTTCCTGCGTTTGCTCAT 1676
Query 12781 CAAAAAATCTCCACAATGTTGCTG-GTATTGGCGGATTCGCCCTGCAGCGGTTCGTTAAA 12839
|| |||||||||||||||| ||| || | || | | ||||||||||| |||||
Sbjct 1675 CAGTAAATCTCCACAATGTT-CTGCGTGTGTGCCGCCTGTCCCTGCAGCGGCTCGTTTGC 1617
Query 12840 CAGTGCATGCATCGTTGCCCAGGCCAAATCTGCGTGGCTGGCCTCTTCGCTGCGGCTGGC 12899
||| || ||||| || |||||||| ||||| |||||||| | || |||||||||||||
Sbjct 1616 CAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCTGGT 1557
Query 12900 TTCATAGGTTGGACGGTTGCCGCTGGCGGTGGTGGCGCGGCGGATAGCCATAAAGGACTG 12959
||||||||| ||||||||||||||||| |||||||| |||||||| |||||| |||||
Sbjct 1556 TTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGACTG 1497
Query 12960 CGCAATGTCGGTGTGCCCAGCGTCAAACTCCAGACGGCGG-TGGCTGATAATGTCGTACG 13018
||| |||||| ||| | |||||||||||||| || | | |||| ||| ||||||| |
Sbjct 1496 CGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGC-GATGGTGTCGTAAG 1438
Query 13019 CCTTGAGCACCAGGGCATTTTTGACGTTAGGGTTGTAGACAAACTCCCGCACGGCAGGAA 13078
|||| ||||||||||| ||||| ||||| ||||| |||||||||||| ||| || |
Sbjct 1437 CCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGCGGGA 1378
Query 13079 AGAACGCTTTTACGTTCTCATAAACACCGTGCCCGACGCCGGTCGAGTCGATGCCGATAT 13138
|||| ||||| || ||||| || || || ||||||||||||| ||||||||||||||||
Sbjct 1377 AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATAT 1318
Query 13139 AGGTCACGTTGTACTGCTGCGTCAGTTTTTTGATAGCATCAGCCTGGGCGCGAAAGTCCA 13198
|||| ||||| |||||||||||||| | |||| || |||||||| || || |||||||
Sbjct 1317 AGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCA 1258
Query 13199 TCCCGCGCCACTGATGACGCTCCAGAATTCGGAACTTCCCGCCAGGTACAGTTGGCGGTG 13258
||||||||||||| |||||||| || || |||||||| ||||| || || | |||||||
Sbjct 1257 TCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTG 1198
Query 13259 CCATAACCACGCAGCCTGCGCTGTCACCGTTCTGCGTACCTTTTGCCGGGTCATAACCGA 13318
|||| |||||||| || |||||||| ||||||||||| || || || ||||| || ||||
Sbjct 1197 CCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGA 1138
Query 13319 TCCACACTTCGCGCCAGCCAAACGGGCGCAGCGCCAGCGCCTGAAAATCGGTCCAGACTT 13378
|||||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 1137 TCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCCAGACTT 1078
Query 13379 CCCAGCTGTCCACCATGCACGCCTGCAGCTCGCTGAGCGGGAACACGGACGCGAGATCGT 13438
||||||||||||||||||| ||||||| | ||| |||| || ||||| |||||||
Sbjct 1077 CCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGT 1018
Query 13439 CCACGAACTCACACATCAGCAGGTTCTGGTATTCGTCCGGGCTGTACTCCATGCGCAGCT 13498
||| || | |||||||||||||||||||| || ||||||||||| | |||||||||
Sbjct 1017 CCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTGCGCAGCT 958
Query 13499 GGTCGAGGTCGAACAGGTTACAGCCGCCGCGCACCGCATCCTCCACGGTGACGATCTGGC 13558
| || ||||| ||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 957 GCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGC 898
Query 13559 GGTACTGCCCGTCAGGGCAGAGCAGGCCGCGCGCAAGGTTGCTG-TGGGTCAGGTTAATA 13617
| |||| ||||| |||||| | ||| ||| || ||| ||| | |||| ||||
Sbjct 897 GAAACTGGCCGTCTTCGCAGAGGCGACCG-GCGGCCAGTGACTGATGGCTGAGGTCAATA 839
Query 13618 TCCACCTTGTCCGCTTTGGCACGGCCCCGGTTAAACAGCGCACCGGACCAGAACGGATAA 13677
|| ||| ||| |||||||| |||||| ||| ||| ||| ||||||||||||||||||
Sbjct 838 TCAACCCGGTCAGCTTTGGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAG 779
Query 13678 GCACTGTGGGTCAGGCTGGAGGGCGTGGAAAAATAGGTTTGTCGCCATTTTTTGTGAATG 13737
|| ||||| || |||||||| || |||||||| ||||||| ||||| || ||||| |
Sbjct 778 GCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGC 719
Query 13738 GCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTTGGTATCCAGAAATATTCATCC 13797
||||| ||||| |||||||| |||||||||| || || || ||||||||||||||||||
Sbjct 718 GCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAATATTCATCC 659
Query 13798 AGGTACAGATTACCGTGATAGCTCTGCGCCGTGCGGGCGTTGGTGCCGAGAAAGTACAAA 13857
||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||
Sbjct 658 AGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGG 599
Query 13858 GCGGCCCCATTGGGTAACACCATGGGATCGCCTTTCAGCTCAACATCCACCTCTTTTGCA 13917
|| || || | | ||| || ||||| ||||| || || |||||||| |||
Sbjct 598 CACGCACCGTTACTGAGCGTCATCGGGTCGCCCTTCAGGTCTACGTCCACCTCGCGGGCA 539
Query 13918 AAGTCGATGATGTACTGCTTAAAGACGTGCGCCTGTGCCTTACTGGCAGAAAGGAAAATC 13977
|| || |||||||||||||| |||||||||||||| ||||||||||| |||||||| |||
Sbjct 538 AATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATC 479
Query 13978 TGGTTGCGTCCGGTCAGCAGGGCGTCAATCAATGCTTCACGGGCAAAATAAAACGTGGCG 14037
|| ||||| ||||| ||| || || |||| || || ||||||||| | || |||||
Sbjct 478 TGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCC 419
Query 14038 CCAATCTGGCGCGACTTGAGCAGGTTGCGGATGCGGTTTGTTTTCCCGGCTTCAAACCAG 14097
||||||||||||||||| ||||||||||||| | || | |||||||| || ||||
Sbjct 418 CCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTCCCGGCCTCCCACCAC 359
Query 14098 TGACGCTGATAGTCGAACATAGAGGCGTGGAAGACTTCTTCCAGCTTTTCGATCTGTTCA 14157
|| ||||| ||| ||||||| ||| ||||||| || || | |||||| || ||||||||
Sbjct 358 TGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCG 299
Query 14158 TCAGTGAAAACATTCTTTTCCGGCTGACGGCGTGGGCCTTTGTTGCGGTTGGCGACGTTA 14217
|| |||| | ||||||||||| | || ||||| ||||||||||| | |||||
Sbjct 298 TCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCTTGTTGCGGTTCTCCACGTTC 239
Query 14218 GGGTTTAAGTCGGCTTCGTTGCCACCATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCC 14277
|| || | ||| ||||| ||||| |||||| | || ||||||||||| || ||||||||
Sbjct 238 GGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGCCGATCCGGGCATGGCGCTCG 179
Query 14278 GACTGGCGCGCCAGCAGGTCAATTTCTTTGAAATCTTTCCCTTCTTTATGCTCCTTCATA 14337
||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||
Sbjct 178 GACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTTCCTTCTGCTCCTTCATG 119
Query 14338 ATGAGCTGGCAGTAGCGTGCGGCGGTGGTGAGCTGCATCTGATCCAGCGGCCCATAGTCG 14397
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 118 ATGAGCTGGCAGTAGCGTGCGGCGGTGGTCAGCTGCATCTGATCCAGCGGGCCATAGTCG 59
Query 14398 CCCCACTTGTCGCGTTTTTTCCAGCTGTGAACGGTTGCAACTTTTTCGCCCAGCATTT 14455
|||||||| ||||| || |||||||||||||||||||| ||| || ||||||||||
Sbjct 58 CCCCACTTATCGCGCTTCTTCCAGCTGTGAACGGTTGCGGGTTTCTCTCCCAGCATTT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 108940562176660
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