Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq40302 255 1e-62 seq32170 185 2e-41 seq22 120 6e-22 seq59797 95.1 2e-14 >seq40302 Length=2817 Score = 255 bits (282), Expect = 1e-62 Identities = 575/857 (67%), Gaps = 13/857 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||||||||| || ||||| ||||||| ||| | ||| Sbjct 1943 CTGGTACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTC 2002 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||| || ||| || | | || ||| | || ||||||| Sbjct 2003 CATGAAGTCAAAGGGATTCTTGACGTTGTAGTACTTGGGCACGCCGAGCTCCACCAGCAG 2062 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || ||| |||||| ||||| | ||||| || | |||||||||| ||||||| Sbjct 2063 CCGGTCGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGC 2122 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || || | || | ||||| ||||||| ||| || | ||||| || | ||||| Sbjct 2123 GACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCTCGTTGATGATCTG 2182 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | || || || | || || || |||||| | | |||| | |||||||| Sbjct 2183 CACCACCCGCTCATCGTACGGCTTCTTAATCAGGTG---GCGAAAGAGGAGACAGGCAAA 2239 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | ||||| ||| ||||| |||||||| ||| | ||| |||| || || ||||| Sbjct 2240 GTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCCCGGCAT 2299 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 | || | || || ||||| || || || || ||||| ||||||||||||||| Sbjct 2300 CAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAAGATGCCCTC 2359 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCA 48315 ||| || ||||| ||| ||| | ||| | || | | |||| | | | | |||| Sbjct 2360 CACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCGGCCGTCCA 2419 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || | ||||| | ||||||||| || ||| |||||||||| ||||| |||||| Sbjct 2420 GGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGCGTTGAAGAG 2479 Query 48376 CTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | || || || | ||| ||| | ||||| ||| |||| | ||||||||| | Sbjct 2480 GTACTCGCGCTGGAC-GCGGTCGCTGATGTAGGTGTTGATCAGCAGGGAGTACATCTCCG 2538 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| || ||||| || || |||||||| ||||||||| | |||||| || || Sbjct 2539 AGTGGACGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAACGGGCCTCGGTGACGGTCA 2598 Query 48495 CTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 | || | ||| ||| | |||| || ||||||||||| || || || || || ||| Sbjct 2599 CCTC-GCGGATGAAGCGCTCCGCGAGGTTCTCATTGACGATGCCGTCGCTGGCGGCGAAG 2657 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCCC 48610 ||||| || || || | || ||||||||||| | | || | |||||| Sbjct 2658 AAGGCCAGAACGTGGGAGATAAAGTGGCGCTCGTTTCGATTTAGCTCGCCGTTCCAGTGG 2717 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | ||| | ||||||||| || || || ||||||||| ||| || || ||| Sbjct 2718 GCGAGGTCGCGACTCAGGTCCACCTCCTCGACGGTCCAGAAGCTCGCCTCGGCCTTCTTG 2777 Query 48671 TACATGCCCCATATGTC 48687 ||||| ||| ||||| Sbjct 2778 TACATCGTCCAGATGTC 2794 >seq32170 Length=3971 Score = 185 bits (204), Expect = 2e-41 Identities = 345/497 (69%), Gaps = 15/497 (3%) Strand=Plus/Minus Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC--CCTGTCCAGTCCCG 213768 |||||||||| ||||| ||||| | || | | ||||||| |||| ||| || | Sbjct 3921 GCCTCGTACTTCTCGTACAGCTCCTCAAAGGCCTCGCCCCAGCAGTCCTG--CAGGCCGG 3864 Query 213769 GACAGGA-TGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAAC 213827 | || |||||| ||||| || |||| | ||||| | ||| | || ||| || Sbjct 3863 GGCACTCGTGCGGG-CACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATAAAG 3805 Query 213828 AGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAG 213887 |||||||| ||||||| ||| ||| ||||| | || | ||| ||| || | | Sbjct 3804 AGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCGGTG 3745 Query 213888 TTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCA 213947 || |||||||| || ||||| || |||||||| ||||||||||| || | |||||||||| Sbjct 3744 TTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATGGCA 3685 Query 213948 AAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATG 214004 || || ||||| | |||| |||||||||||||| | ||| ||||| ||| | Sbjct 3684 AACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACG 3625 Query 214005 CGCAGGACGGGTACCAGCCCGTTG--GACTGTCCGTTGGTTCCCGCT-ATATACGAGCCG 214061 ||||| | || |||||||| ||| ||| ||||| | | ||||| || || | ||| Sbjct 3624 CGCAGCATCGGCACCAGCCCATTGCTGAC--GCCGTTTG-TGCCGCTGATGTAGGTGCCC 3568 Query 214062 GAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCG 214121 | ||| | | | | || | || || ||||| ||||| |||||||||| |||||| Sbjct 3567 GCGGCGCGGATGCAGTGCACGTTGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCG 3508 Query 214122 CAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAG 214181 || || ||| || || |||||| | || ||| || | ||| |||||| ||| Sbjct 3507 CACTGCTTCAGCGTGTCGTAGATGCCCTCAATCGAGTCCTCGGAGAGCGTCAGCAGAAAG 3448 Query 214182 CAGCTCGAGAGCTGGGG 214198 ||| || ||||| || Sbjct 3447 CAGGAGGACAGCTGCGG 3431 >seq22 Length=933496 Score = 120 bits (132), Expect = 6e-22 Identities = 355/536 (66%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| ||||| || | || || |||||||||| || ||| | || ||||| Sbjct 329637 CAGGCAAGCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGT 329578 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 | ||||||||| | |||| | || ||||| || |||| || ||| |||| || Sbjct 329577 CAAACCAGGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAA 329518 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG--CGTTCTTG 48304 ||| ||||| || || || || || || | | | || || |||| | || | | | Sbjct 329517 GAAAATGCCTTCAACCGCGGCAAATGCTATTATACGTTCGCC-AAAGTTGGCCGATTTCG 329459 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGAT-GCATGGCATCGTCTCTAT 48363 ||| ||||| | || ||||| || ||||| ||| | ||| ||||||||||| || Sbjct 329458 A-TGAAATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCA-GGCATCGTCTCAAT 329401 Query 48364 GGCCCGGAAGAGCTTCTTGCACTCACCTGCG-TCCGCAACATAGGTAGTGAGCAGCTTTG 48422 || ||| | | | | | | ||| ||| || ||| ||| | | | || Sbjct 329400 AGCATTGAACAAGTAATCCCTTTG-CTTGCCATCCTTAATATATGTATCAATTAA-TATG 329343 Query 48423 C-GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | |||||| ||||| ||||||||||| || ||||| || || || |||||| | ||| Sbjct 329342 CTGTACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCC 329283 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 || | || |||||| | ||| | || | | || ||||| || || ||||| Sbjct 329282 TCTGTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCG 329223 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA 48601 || || |||||||| || | || || || ||||||||| || |||| ||||||| Sbjct 329222 GAGGCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGC 329163 Query 48602 TTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 ||| | | | |||||| ||||| || |||||||| ||||||||||| || Sbjct 329162 GCCCAATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGC 329107 >seq59797 Length=1646 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||| | || |||| |||||||||||||| | || || || ||||||||||| Sbjct 1611 ACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATGGATGCAAATGAACCAGAGAAGAA 1552 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 || || || || || || || || || ||||| || || || || |||| ||| Sbjct 1551 AATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCACCAAATGATGCTTTCTCGTCATT 1492 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| || |||||||| || || ||| |||||||| || || || || || Sbjct 1491 GATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAATGCATGGAATAGTTTCAATAGC 1435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930523600652800