Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq40302 194 3e-44
seq32170 152 1e-31
seq13731 102 2e-16
seq53698 100 5e-16
>seq40302
Length=2817
Score = 194 bits (214), Expect = 3e-44
Identities = 497/756 (66%), Gaps = 16/756 (2%)
Strand=Plus/Minus
Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633
|||||| || ||| || |||| |||| ||||| || ||| || || || || |
Sbjct 2691 ACGAGCGCCACTTTATCTCCCACGTTCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCA 2632
Query 25634 ACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTG-CAGTACGTGGAGGCCAAGTGTTTC 25692
| ||||| || ||| | |||| | | || ||| | || | |||||| || |||
Sbjct 2631 ATGAGAACCTCGCGGAGCGCTTCATCCGCGAGGTGACCGT-CACCGAGGCCCGTTGCTTC 2573
Query 25693 TACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG 25752
||||| |||||||| |||||||| || || ||||| ||| |||| || ||| | |
Sbjct 2572 TACGGCTTCCAGATTGCCATCGAGAACGTCCACTCGGAGATGTACTCCCTGCTGATCAAC 2513
Query 25753 ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCC 25812
|| ||||| | ||| || | || | || || || |||||| || || |||
Sbjct 2512 ACCTACATCAGCGACCGCGTCCAGCGCGAGTACCTCTTCAACGCCATCCAGACGATGCCC 2453
Query 25813 AGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGA----GCGCTAC 25868
|| || || ||||||| |||||||||| |||| | | ||| | |||| ||
Sbjct 2452 TGCGTCGCGAAGAAGGCGAAGTGGGCCATGGCCTGGA-CGGCCGCCGAAAACGGCGCCAC 2394
Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928
|||| |||||| || || ||||| || || |||||||||||||| |||||||| || ||
Sbjct 2393 CTTTGCCGAGCGCCTCGTCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTT 2334
Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988
||| |||||| ||||| ||| || || ||||| || ||| ||| ||| ||
Sbjct 2333 TGCCAGCATCTTTTGGCTGAAGAAGCGCGGCCTGATGCCGGGCCTGACCTTCAGCAATGA 2274
Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048
||| |||||| | |||||||| || ||| | || |||||||| || |||| ||||
Sbjct 2273 GCTGATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCTGTCTCCTCT---TTCGCCA 2217
Query 26049 CTTGCTCCACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGA 26107
| || | | || || | | ||| || | ||| |||||||| ||||| || |
Sbjct 2216 CCTGATTAAGAAGCCGTACGATGAGCGGGTGGTGCAG-ATCATCAACGAGGCCGTCCGCA 2158
Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167
||||| ||||||| | | |||||||||||| |
Sbjct 2157 TCGAGCAGGAGTTCCTCACTGACGCCCTTCCGGTCGCCCTCATTGGCATGAACAACGAGC 2098
Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227
| ||| | ||||||||||| ||||||| |||||| |||| || | |||
Sbjct 2097 TGATGTCCACGTACATTGAGTACTGCGCCGACCGGCTGCTGGTGGAGCTCGGCGTGCCCA 2038
Query 26228 GACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285
||||| ||| | || || || ||||| ||||| | || |||| || ||
Sbjct 2037 AGTACTACA--ACGTCAAGAATCCCTTTGACTTCATGGAGCAGATCAGCCTGGAGGGAAA 1980
Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||| |||||||| ||| | |||||||| || ||
Sbjct 1979 GACCAATTTCTTTGAGAAGCGCGTCGGCGAGTACCA 1944
>seq32170
Length=3971
Score = 152 bits (168), Expect = 1e-31
Identities = 307/446 (69%), Gaps = 16/446 (4%)
Strand=Plus/Minus
Query 221980 CAGGCCTGGACACCTG-GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCT 222038
|||||| || ||| | ||||| |||||||| |||| || | | ||| | ||
Sbjct 3871 CAGGCCGGGGCACTCGTGCGGG-CACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCT 3813
Query 222039 GCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCA 222098
||| ||||||||||| | ||||| || | ||||| || | || || ||||||||
Sbjct 3812 TCATAAAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCG 3753
Query 222099 CGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGAT 222158
|||| |||| || | ||| || | |||||| || ||||| ||||||||||| || || |
Sbjct 3752 AGCCGGTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGT 3693
Query 222159 AGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGT 222218
||| ||| | || || || |||||||| || ||||| ||||| | | ||
Sbjct 3692 AGATGGCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGT 3633
Query 222219 TGAAGATGCGAAGGGTCGGTACCAGTCCGTTG--GATCGACCGTTGGTGCCCTTAATGTA 222276
|| ||| ||| || |||| ||||| || ||| || || ||||| ||||| | |||||
Sbjct 3632 TGTAGACGCGCAGCATCGGCACCAGCCCATTGCTGA-CG-CCGTTTGTGCCGCTGATGTA 3575
Query 222277 CGCACCGCCGGCCCTCAGGTTACTG-GCA----GACATGCCGATACCACCGGCGTGTTTC 222331
| || |||| | || | | | ||| ||| ||| || || ||||| ||
Sbjct 3574 GGTGCCCGCGGCGC---GGATGCAGTGCACGTTGAC--GCCAATGCCGCCGGCCGACTTG 3520
Query 222332 GAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACG 222391
||||| |||||||| ||| || ||||| ||||||||| || |||||||| ||
Sbjct 3519 GAGATGATGGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCAATCGAGTCCTCGGAGAGC 3460
Query 222392 TTCAGCAGAAAACAAGACGACATCTG 222417
|||||||||| || || |||| |||
Sbjct 3459 GTCAGCAGAAAGCAGGAGGACAGCTG 3434
>seq13731
Length=15303
Score = 102 bits (112), Expect = 2e-16
Identities = 291/444 (66%), Gaps = 5/444 (1%)
Strand=Plus/Plus
Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818
|| || || || || |||||||| || ||||| || | | | |||||| || | |
Sbjct 1526 ATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGATTACTTTTTCTA 1585
Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878
|| || |||||||| | |||| | || || ||||||| ||| | | | ||
Sbjct 1586 TTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGGGATTCAATGATG 1645
Query 221879 TTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937
| ||| || || || || |||||||| | || | || || |||||||||
Sbjct 1646 GCGAACCAAAGA-CTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC---CTTTTCATA 1701
Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997
| ||||| | | || || | ||| || | |||| | | ||| ||||| |
Sbjct 1702 CTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAGGACATTTATG 1761
Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057
|||||||||| ||| | ||| ||| || | | |||||| | || || ||
Sbjct 1762 TGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAATAAATCTGGTAT 1821
Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117
||||| || | ||| | |||||||| || ||||| || || | || ||| |||
Sbjct 1822 CCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTATTCTTCTTCAA 1881
Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177
|||||||||||||||||| || || ||||| || |||| || | ||| | ||||| ||
Sbjct 1882 ATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCAAAGGCGCCAGG 1941
Query 222178 TCGCTTGTTGCCACCCTGATCCAC 222201
|||||| ||||||||||| ||
Sbjct 1942 CCGCTTGCCACCACCCTGATCTAC 1965
>seq53698
Length=1888
Score = 100 bits (110), Expect = 5e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182
|| || || || || |||||||||| | | ||| | |||| ||| |||| || |||
Sbjct 1720 ACCTGAAACTCGCCGGAGAGCACCCGTCGCGAGTAGATGTTATTCGTGTACGGCTCAATG 1779
Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242
||| |||||||| || ||||| ||||| |||||||||||| || |||| |||||||
Sbjct 1780 GACTCATTGTTGCCGAGAATCTGCGCCGTCGAGGCGGTGGGCATCGGCGCCAGCAGCAGA 1839
Query 221243 CTGTTGCGCA 221252
||||||||||
Sbjct 1840 CTGTTGCGCA 1849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 927838512764800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |