Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq40302 194 3e-44 seq32170 152 1e-31 seq13731 102 2e-16 seq53698 100 5e-16 >seq40302 Length=2817 Score = 194 bits (214), Expect = 3e-44 Identities = 497/756 (66%), Gaps = 16/756 (2%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||||| || ||| || |||| |||| ||||| || ||| || || || || | Sbjct 2691 ACGAGCGCCACTTTATCTCCCACGTTCTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCA 2632 Query 25634 ACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTG-CAGTACGTGGAGGCCAAGTGTTTC 25692 | ||||| || ||| | |||| | | || ||| | || | |||||| || ||| Sbjct 2631 ATGAGAACCTCGCGGAGCGCTTCATCCGCGAGGTGACCGT-CACCGAGGCCCGTTGCTTC 2573 Query 25693 TACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG 25752 ||||| |||||||| |||||||| || || ||||| ||| |||| || ||| | | Sbjct 2572 TACGGCTTCCAGATTGCCATCGAGAACGTCCACTCGGAGATGTACTCCCTGCTGATCAAC 2513 Query 25753 ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCC 25812 || ||||| | ||| || | || | || || || |||||| || || ||| Sbjct 2512 ACCTACATCAGCGACCGCGTCCAGCGCGAGTACCTCTTCAACGCCATCCAGACGATGCCC 2453 Query 25813 AGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGA----GCGCTAC 25868 || || || ||||||| |||||||||| |||| | | ||| | |||| || Sbjct 2452 TGCGTCGCGAAGAAGGCGAAGTGGGCCATGGCCTGGA-CGGCCGCCGAAAACGGCGCCAC 2394 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| |||||| || || ||||| || || |||||||||||||| |||||||| || || Sbjct 2393 CTTTGCCGAGCGCCTCGTCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTT 2334 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| |||||| ||||| ||| || || ||||| || ||| ||| ||| || Sbjct 2333 TGCCAGCATCTTTTGGCTGAAGAAGCGCGGCCTGATGCCGGGCCTGACCTTCAGCAATGA 2274 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||| |||||| | |||||||| || ||| | || |||||||| || |||| |||| Sbjct 2273 GCTGATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCTGTCTCCTCT---TTCGCCA 2217 Query 26049 CTTGCTCCACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGA 26107 | || | | || || | | ||| || | ||| |||||||| ||||| || | Sbjct 2216 CCTGATTAAGAAGCCGTACGATGAGCGGGTGGTGCAG-ATCATCAACGAGGCCGTCCGCA 2158 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 ||||| ||||||| | | |||||||||||| | Sbjct 2157 TCGAGCAGGAGTTCCTCACTGACGCCCTTCCGGTCGCCCTCATTGGCATGAACAACGAGC 2098 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 | ||| | ||||||||||| ||||||| |||||| |||| || | ||| Sbjct 2097 TGATGTCCACGTACATTGAGTACTGCGCCGACCGGCTGCTGGTGGAGCTCGGCGTGCCCA 2038 Query 26228 GACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 ||||| ||| | || || || ||||| ||||| | || |||| || || Sbjct 2037 AGTACTACA--ACGTCAAGAATCCCTTTGACTTCATGGAGCAGATCAGCCTGGAGGGAAA 1980 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| |||||||| ||| | |||||||| || || Sbjct 1979 GACCAATTTCTTTGAGAAGCGCGTCGGCGAGTACCA 1944 >seq32170 Length=3971 Score = 152 bits (168), Expect = 1e-31 Identities = 307/446 (69%), Gaps = 16/446 (4%) Strand=Plus/Minus Query 221980 CAGGCCTGGACACCTG-GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCT 222038 |||||| || ||| | ||||| |||||||| |||| || | | ||| | || Sbjct 3871 CAGGCCGGGGCACTCGTGCGGG-CACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCT 3813 Query 222039 GCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCA 222098 ||| ||||||||||| | ||||| || | ||||| || | || || |||||||| Sbjct 3812 TCATAAAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCG 3753 Query 222099 CGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGAT 222158 |||| |||| || | ||| || | |||||| || ||||| ||||||||||| || || | Sbjct 3752 AGCCGGTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGT 3693 Query 222159 AGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGT 222218 ||| ||| | || || || |||||||| || ||||| ||||| | | || Sbjct 3692 AGATGGCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGT 3633 Query 222219 TGAAGATGCGAAGGGTCGGTACCAGTCCGTTG--GATCGACCGTTGGTGCCCTTAATGTA 222276 || ||| ||| || |||| ||||| || ||| || || ||||| ||||| | ||||| Sbjct 3632 TGTAGACGCGCAGCATCGGCACCAGCCCATTGCTGA-CG-CCGTTTGTGCCGCTGATGTA 3575 Query 222277 CGCACCGCCGGCCCTCAGGTTACTG-GCA----GACATGCCGATACCACCGGCGTGTTTC 222331 | || |||| | || | | | ||| ||| ||| || || ||||| || Sbjct 3574 GGTGCCCGCGGCGC---GGATGCAGTGCACGTTGAC--GCCAATGCCGCCGGCCGACTTG 3520 Query 222332 GAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACG 222391 ||||| |||||||| ||| || ||||| ||||||||| || |||||||| || Sbjct 3519 GAGATGATGGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCAATCGAGTCCTCGGAGAGC 3460 Query 222392 TTCAGCAGAAAACAAGACGACATCTG 222417 |||||||||| || || |||| ||| Sbjct 3459 GTCAGCAGAAAGCAGGAGGACAGCTG 3434 >seq13731 Length=15303 Score = 102 bits (112), Expect = 2e-16 Identities = 291/444 (66%), Gaps = 5/444 (1%) Strand=Plus/Plus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 || || || || || |||||||| || ||||| || | | | |||||| || | | Sbjct 1526 ATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGATTACTTTTTCTA 1585 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 || || |||||||| | |||| | || || ||||||| ||| | | | || Sbjct 1586 TTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGGGATTCAATGATG 1645 Query 221879 TTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 | ||| || || || || |||||||| | || | || || ||||||||| Sbjct 1646 GCGAACCAAAGA-CTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC---CTTTTCATA 1701 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 | ||||| | | || || | ||| || | |||| | | ||| ||||| | Sbjct 1702 CTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAGGACATTTATG 1761 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 |||||||||| ||| | ||| ||| || | | |||||| | || || || Sbjct 1762 TGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAATAAATCTGGTAT 1821 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||||| || | ||| | |||||||| || ||||| || || | || ||| ||| Sbjct 1822 CCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTATTCTTCTTCAA 1881 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 |||||||||||||||||| || || ||||| || |||| || | ||| | ||||| || Sbjct 1882 ATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCAAAGGCGCCAGG 1941 Query 222178 TCGCTTGTTGCCACCCTGATCCAC 222201 |||||| ||||||||||| || Sbjct 1942 CCGCTTGCCACCACCCTGATCTAC 1965 >seq53698 Length=1888 Score = 100 bits (110), Expect = 5e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || || || |||||||||| | | ||| | |||| ||| |||| || ||| Sbjct 1720 ACCTGAAACTCGCCGGAGAGCACCCGTCGCGAGTAGATGTTATTCGTGTACGGCTCAATG 1779 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| |||||||| || ||||| ||||| |||||||||||| || |||| ||||||| Sbjct 1780 GACTCATTGTTGCCGAGAATCTGCGCCGTCGAGGCGGTGGGCATCGGCGCCAGCAGCAGA 1839 Query 221243 CTGTTGCGCA 221252 |||||||||| Sbjct 1840 CTGTTGCGCA 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927838512764800