Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq81708 215 5e-51 seq85787 129 6e-25 >seq81708 Length=1085 Score = 215 bits (238), Expect = 5e-51 Identities = 190/236 (81%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 60066 TGCCATTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60125 ||| |||||| ||| || ||||| ||||||| ||||| || |||||||| || || ||| Sbjct 233 TGCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTC 292 Query 60126 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60185 || | ||||||||| || ||||| ||||| || || ||||||| ||| |||||||||||| Sbjct 293 AGCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCC 352 Query 60186 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 60245 ||||| || || |||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct 353 GGATGGTTCACGGCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGA 412 Query 60246 CCACCTTCAATTTTAACCGCAGGTTGTGGTTCAATTTCAATTTCACGGGTATGCAA 60301 ||||||||||| ||| |||| | |||| | |||||||| |||| |||| Sbjct 413 CCACCTTCAATACGCACCTGCGGTTTCTGCTCAAGTGGAATTTCAC-GGTAAGCAA 467 >seq85787 Length=1013 Score = 129 bits (142), Expect = 6e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 60066 TGCCATTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60125 ||| ||||||| || || || ||||| | || || || |||||| || ||| Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643 Query 60126 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60185 || ||||| ||||| || ||||| || || || ||||||||||||||||||||||| ||| Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703 Query 60186 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 60245 ||||| | | ||||| ||| | |||||| || ||||| |||||||| |||||| Sbjct 704 GGATGTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGA 763 Query 60246 CCACCTTCAATTTT 60259 |||||||| || || Sbjct 764 CCACCTTCGATGTT 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532091719938800