Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_019503.1
Length=166499
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 215 5e-51
seq85787 129 6e-25
>seq81708
Length=1085
Score = 215 bits (238), Expect = 5e-51
Identities = 190/236 (81%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 60066 TGCCATTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60125
||| |||||| ||| || ||||| ||||||| ||||| || |||||||| || || |||
Sbjct 233 TGCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTC 292
Query 60126 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60185
|| | ||||||||| || ||||| ||||| || || ||||||| ||| ||||||||||||
Sbjct 293 AGCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCC 352
Query 60186 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 60245
||||| || || |||||||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 353 GGATGGTTCACGGCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGA 412
Query 60246 CCACCTTCAATTTTAACCGCAGGTTGTGGTTCAATTTCAATTTCACGGGTATGCAA 60301
||||||||||| ||| |||| | |||| | |||||||| |||| ||||
Sbjct 413 CCACCTTCAATACGCACCTGCGGTTTCTGCTCAAGTGGAATTTCAC-GGTAAGCAA 467
>seq85787
Length=1013
Score = 129 bits (142), Expect = 6e-25
Identities = 145/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 60066 TGCCATTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60125
||| ||||||| || || || ||||| | || || || |||||| || |||
Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643
Query 60126 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60185
|| ||||| ||||| || ||||| || || || ||||||||||||||||||||||| |||
Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703
Query 60186 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 60245
||||| | | ||||| ||| | |||||| || ||||| |||||||| ||||||
Sbjct 704 GGATGTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGA 763
Query 60246 CCACCTTCAATTTT 60259
|||||||| || ||
Sbjct 764 CCACCTTCGATGTT 777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532091719938800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |