Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq81517 89.7 3e-13 >seq81517 Length=1088 Score = 89.7 bits (98), Expect = 3e-13 Identities = 172/253 (68%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422 |||||||| || || | ||| || ||||| | ||||| | ||| ||||| ||| Sbjct 484 ATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACGAATTCTCCGGGACGAAGT 543 Query 78423 CCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATT 78482 ||| || || ||||| |||| ||| | || || || || || || || ||||| | Sbjct 544 CCGGTCACGTGTGCAATCATATATGTTAACAAAGCATAAGAGGCGATATTGAATGGCACG 603 Query 78483 CCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGAT 78542 || || | |||| |||| ||||| ||||| || ||| |||| |||| || Sbjct 604 CCCAATCCCATGTCAGCGCTACGTTGATACAACTGACAAGACAGCTCACCATT---TGCA 660 Query 78543 ACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGA 78602 ||| |||| || |||| |||||||| ||||||||||| | | |||| ||| Sbjct 661 ACGAAAAATTGTGCTAGACAATGACAAGGAGGTAGTGCCATTTGCGGAATGTCAAGGGGA 720 Query 78603 TTCCAAGCAGACA 78615 ||||| ||||||| Sbjct 721 TTCCACGCAGACA 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299842943806000