Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_019515.1
Length=93839
Score E
Sequences producing significant alignments: (Bits) Value
seq81517 89.7 3e-13
>seq81517
Length=1088
Score = 89.7 bits (98), Expect = 3e-13
Identities = 172/253 (68%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 78363 ATATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGT 78422
|||||||| || || | ||| || ||||| | ||||| | ||| ||||| |||
Sbjct 484 ATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACGAATTCTCCGGGACGAAGT 543
Query 78423 CCGCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATT 78482
||| || || ||||| |||| ||| | || || || || || || || ||||| |
Sbjct 544 CCGGTCACGTGTGCAATCATATATGTTAACAAAGCATAAGAGGCGATATTGAATGGCACG 603
Query 78483 CCTAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGAT 78542
|| || | |||| |||| ||||| ||||| || ||| |||| |||| ||
Sbjct 604 CCCAATCCCATGTCAGCGCTACGTTGATACAACTGACAAGACAGCTCACCATT---TGCA 660
Query 78543 ACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGA 78602
||| |||| || |||| |||||||| ||||||||||| | | |||| |||
Sbjct 661 ACGAAAAATTGTGCTAGACAATGACAAGGAGGTAGTGCCATTTGCGGAATGTCAAGGGGA 720
Query 78603 TTCCAAGCAGACA 78615
||||| |||||||
Sbjct 721 TTCCACGCAGACA 733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 299842943806000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |