Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq52999 917 0.0 seq69575 118 2e-22 >seq52999 Length=1923 Score = 917 bits (1016), Expect = 0.0 Identities = 1314/1832 (72%), Gaps = 68/1832 (4%) Strand=Plus/Plus Query 10673 CAGCTCATCCTGAAAGAGGTCAAAG--GCAATGGTGACTACAAAGAGATAGACGCGCTTG 10730 ||||||||| |||| ||| || | | || || ||| ||| || || ||| ||| | Sbjct 111 CAGCTCATCATGAAGGAGCAGAAGGAAGGAAAGG--ACTTCAAGGAAATCGACCTGCTGG 168 Query 10731 GCCGTCAGATTGAACGCCTCGCCCGCGTGGAGCGCTACCGCAGCA---GCGGCAACGAGG 10787 || ||| || |||| ||||| | | || | ||||| ||||||| || | Sbjct 169 CGCGGCAGTCCGAGCGCCATGCCCGGATCG---GCAAATTCAGCAATGGCGGCAATGAAG 225 Query 10788 CCGATCTGAATCCGAACGTACGCAACCGTAACAAAGGCGAGCGCCAGCCGGTCGTGAAGA 10847 | || |||||||||||||| ||||| ||||| ||| ||| |||| | |||| Sbjct 226 CGGACCTGAATCCGAACGTGGAGAACCGCAACAAGGGCCCGCGTAAGCCCCCGGAAAAGA 285 Query 10848 ACGTCTTCAGCGACGAGCAGGCGGAAAAGCTGACCGGCCTGTTT--ATGGATAACTGCTT 10905 || | ||||||||||| ||| || |||||| | || ||| | || | || || Sbjct 286 ACCTGTTCAGCGACGAACAGATTGAGAAGCTG-CAGGAGGTTTTCCACGGCTCGATG-TT 343 Query 10906 TGAATATCAGCTCAACTGGCACAAAGCCGG--ACTGGATCACCGTATCCGCAACATCCTG 10963 | || |||| | | ||| | ||||| | | | |||| ||||||| | ||| Sbjct 344 CGGCTACCAGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGT--CCGCAACCTGCTG 401 Query 10964 AAGTCGCGCCAGATAGGTGCCACGTTCTACTTTGCCCGCGAGGCGCTGATTGACGCGCTG 11023 |||||||||||||| || ||||| |||| |||||||||||||||||||| || |||||| Sbjct 402 AAGTCGCGCCAGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTG 461 Query 11024 ACCACCGGGCGCAACCAGATATTTTTGTCGGCCAGCAAGGCGCAGGCGCACGTCTTTAAA 11083 |||||||||||||| |||||||| | || ||||| |||||||||||||||||||| || Sbjct 462 ACCACCGGGCGCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAG 521 Query 11084 AACTACATCATTGACTTTGCCCGCCAGGTGGACGTTGACCTGAAGGGCGACCCGATTGTG 11143 | ||||||||||| ||||||||| |||||||||| |||||||||||||||||||| | Sbjct 522 CAGTACATCATTGAATTTGCCCGCGAGGTGGACGTAGACCTGAAGGGCGACCCGATGACG 581 Query 11144 CTGCCGAACGGTGCCCGCCTGATTTTTCTTGGCACCAACGTGCGCACCGCGCAGAGCTAC 11203 || |||||||| ||||| ||| || |||||||||| ||||||||||||||||| Sbjct 582 CTCAGTAACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTAT 641 Query 11204 ACCGGCAACCTGTATCTCGATGAATATTTCTGGATACCGAAATTCCAGGAGCTGCGAAAG 11263 |||||| ||||| || ||||||||||||||||| ||||| || ||||| |||| || Sbjct 642 CACGGCAATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAA 701 Query 11264 GTCGCCAGCGGCATGTCGCTGCATAAAAAGTGGCGCACCACCTACTTTTCCACGCCGTCG 11323 || || ||||||| ||||||| || ||||||||| |||||||||||||| ||||| Sbjct 702 GTGGCGTCCGGCATGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCC 761 Query 11324 AGCCTGTCGCACTCCGCTTATCCGTTCTGGTCGGGCGAGCTGTTCAACAAAGGGCGGCGC 11383 ||||| ||||| ||| |||||||||||||| || || ||||||| |||||| | || Sbjct 762 AGCCTCACGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAAC-AAGGGCCGGGC 820 Query 11384 AGCAAAGCCGATCGCATCGAAATCGACCTGTCGCATACGCACCTGGCAAAAGG-CGCGCT 11442 |||||| || || | || || ||||| ||| | ||||| || ||| || Sbjct 821 --CAAAGCTGACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGC-CT 877 Query 11443 GTGCGGTGACGGCCAGTGGCGGCAGATTGTGACGGTTGAGGATGCGCTGACCGGCGGCTG 11502 |||| |||||||||| || ||||| || || ||||| |||||| || ||||||||| Sbjct 878 CTGCGAAGACGGCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTG 937 Query 11503 TAACCTGTTTGACCTCGACCAGCTCCAGCTGGAATACAGCCCGTCGGAATACCAGAACCT 11562 | ||||||||||||| || ||||| | | ||||||||| ||| ||||||||||| Sbjct 938 TGACCTGTTTGACCTGGAGCAGCTGCGCACGCGCTACAGCCCGGAGGATTACCAGAACCT 997 Query 11563 GCTGATGTGTGAGTTTGTGGACGATGAGGCGAGCGTGTTCCCGTTCGCCGAGCTGCAGAC 11622 ||||||||| | ||| |||||||| |||| || |||| | | ||| |||||||| Sbjct 998 GCTGATGTGCGTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAA 1057 Query 11623 CTGCATGATCGACAGCCTGGAGGAATGGAGCGACTTTAACCCGTACCTGCCGCGCCCGTT 11682 |||||| | |||||| ||| | |||| ||||||| | || || ||||||||| Sbjct 1058 ATGCATGGTGGACAGCTGGGAAGTCTGGACCGACTTTGAGGCGCTGGCGCTGCGCCCGTT 1117 Query 11683 TGATTACCGCCCGGTCTGGATTGGCTACGACCC---------GTCGCACACCGGCGACAG 11733 | | || ||||| ||||||||||| |||| | ||||||||| Sbjct 1118 CGGCTGGAAAGAAGTGTGGATCGGCTACGACCCCGCGAAGGGAACGCAGAACGGCGACAG 1177 Query 11734 CGCAGGCTGTGCCGTTATCGCGCCGCCGCTGGTTGCGGGCGGCAAGTTTCGCGTGCTGGA 11793 ||| || || | || || || ||||| || ||||||||||||| ||| | || || Sbjct 1178 CGCCGGATGCGTGGTCATGGCACCGCCTGCCGTGCCGGGCGGCAAGTTCCGCATCCTTGA 1237 Query 11794 GCGTCACCAGTGGCGGGGCATGGACTTTGCCGCGCAGGCAAAATCCATTGAGGAC-TTAA 11852 ||||||||||||||| || |||||||| |||||||| | ||| | ||||| | | Sbjct 1238 GCGTCACCAGTGGCGCGGGATGGACTTCCGGGCGCAGGCTGACGCCA-TCAGGACGCTGA 1296 Query 11853 CGAAAAAATACACCGTCGAGTATATCGGCGTGGATGCGACCGGCATCGGCCAGGGCGTTT 11912 || | | || | |||| ||||||||| | || | |||||| |||| | ||||| | Sbjct 1297 CGCAGCAGTATAACGTCACCTATATCGGCATCGACTCCACCGGCGTCGGGCTTGGCGTAT 1356 Query 11913 TCCAGCTGGT--TCGCCAGTTCTACCCGGCGGCGCGTGAAATCCGTTACTCGCCGGAAGT 11970 | || || ||| |||| |||| || | || | || ||| | || Sbjct 1357 ACGAGAATGTCAAAGCC--TTCTTCCCGCAGGTGAAGGAGTTTGTCTATAACCCGAACGT 1414 Query 11971 GAAAACCGCGATGGTGCTGAAGGCAAAAGACACCATCAGCAGCGGACGCCTGGAATACGA 12030 ||||| ||| ||||||||||||| | ||||||||| |||||| || ||||| | || Sbjct 1415 GAAAAACGCCCTGGTGCTGAAGGCTTACGACACCATCGCCAGCGGGCGGCTGGAGTTTGA 1474 Query 12031 TGCGGGCCAGACCGACATTACGCAGTCTTTTATGGCAATCCGCAAAACCATGACCGCCAG 12090 || |||| |||||| ||||||| |||||| | ||||||||| ||| || ||||| Sbjct 1475 CGCCAGCCACCTCGACATCGCGCAGTCATTTATGTCTATCCGCAAAGCCACCACGGCCAG 1534 Query 12091 CGGCAACCGCTCCACCTATGAGGCGAGCCGCAGCGAGGACGCCAGCCACGCCGACGTCGC 12150 ||||||||| | |||||||| | |||||||||||||| | |||||||| ||| | || Sbjct 1535 CGGCAACCGTCCGACCTATGAAACCAGCCGCAGCGAGGAAGTCAGCCACGGCGATTTAGC 1594 Query 12151 CTGGGCAATCATGCACGCCCTGCTTAACGAACCGCTGACCGCCGCCAGCGGCGGCGCTAA 12210 |||||| | ||||||||| ||| ||||| ||||| || | | |||||| | | Sbjct 1595 CTGGGCGACCATGCACGCGCTGGCAAACGAGCCGCT----GCAGGGACAGGCGGCACACA 1650 Query 12211 CCCTTCA-ATTCTGGAATTTTACTGATGAGCAAACGCAGGGGCCGTAAGGCTTTCAACGC 12269 | | | ||| |||| |||||||||||||||||||||| ||| | ||| Sbjct 1651 CGCAGAACATTGTGGAGATTTACTGATGAGCAAACGCAGGAACCGCA--------CCCGC 1702 Query 12270 AAAAACGCAGCCCGTACCGGCCGCCG-----------CACCGCAGCAGCAGGCGGAAGCG 12318 ||||||||||| || || |||| || || ||||| | |||| ||| Sbjct 1703 ----ACGCAGCCCGTGCC-GCAGCCGGATAACATGACCAGCGGGGCAGC-GTCGGAGGCG 1756 Query 12319 TTCACCTTTGGCGAGCCGACGCCGGTTATGGACAAGCGCGATATCCTGGATTATGCCGAG 12378 || ||||||||||| |||| ||||| ||||| ||||| | ||||| || | ||| Sbjct 1757 TTTACCTTTGGCGACCCGATCCCGGTGCTGGACCGCCGCGAACTGCTGGACTACGTGGAG 1816 Query 12379 TGCATCGGTAACGGGCGCTGGTATGAGCCGCCGGTCAGCTTTCACGGGCTGGCGAAAAGC 12438 ||| | || | ||||||||||| || || || ||| || ||||||||||| | Sbjct 1817 TGCGTTATCAATGATCGCTGGTATGAACCACCCGTGAGCGTTGACGGGCTGGCGCGCACG 1876 Query 12439 CTGCGAGCGGCGGTGCATCACAGCTCGCCGAT 12470 | || || || |||||||||||||| || || Sbjct 1877 TTCCGCGCCGCCGTGCATCACAGCTCACCCAT 1908 >seq69575 Length=1340 Score = 118 bits (130), Expect = 2e-22 Identities = 207/301 (69%), Gaps = 9/301 (3%) Strand=Plus/Minus Query 11654 GACTTTAACCCGTACCTGCCGCGCCCGTTTGATTACCGCCCGGTCTGGATTGGCTACGAC 11713 |||| ||||| ||| |||||||| | | |||||| ||||||||||| ||||| Sbjct 315 GACTGGAACCCCTACGCCCCGCGCCCACTCGCCAGCCGCCCTGTCTGGATTGGGTACGAT 256 Query 11714 CC-----GTCGCA----CACCGGCGACAGCGCAGGCTGTGCCGTTATCGCGCCGCCGCTG 11764 || || || || ||||||||||| || || | | || ||||||||||| Sbjct 255 CCCAACGGTAACAGTGACAAAGGCGACAGCGCCGGTCTTGTCATCCTCTCGCCGCCGCTG 196 Query 11765 GTTGCGGGCGGCAAGTTTCGCGTGCTGGAGCGTCACCAGTGGCGGGGCATGGACTTTGCC 11824 || | |||||||| || ||||| | |||||||||||| ||| |||||||| |||| Sbjct 195 GTACCCGGCGGCAAATTCCGCGTAATCGAGCGTCACCAGCTGCGCGGCATGGAGTTTGAA 136 Query 11825 GCGCAGGCAAAATCCATTGAGGACTTAACGAAAAAATACACCGTCGAGTATATCGGCGTG 11884 | ||||| |||| |||||| | | || | |||| ||| || |||||| | | Sbjct 135 GAACAGGCGAAATTTATTGAGCGCCTCACCCGCATGTACAACGTGCAGCATATCGACATC 76 Query 11885 GATGCGACCGGCATCGGCCAGGGCGTTTTCCAGCTGGTTCGCCAGTTCTACCCGGCGGCG 11944 |||| |||||||| ||| || || ||||| || | | |||| ||| || ||| Sbjct 75 GATGGCACCGGCATTGGCGCGGCGGTACATCAGCTTGTGCTGAAATTCTTCCCCGCTGCG 16 Query 11945 C 11945 | Sbjct 15 C 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94385957300040