Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq41539 260 3e-65 >seq41539 Length=2700 Score = 260 bits (288), Expect = 3e-65 Identities = 478/688 (69%), Gaps = 17/688 (2%) Strand=Plus/Minus Query 36492 AGCATTTCCCGCTTCATCTGCCACGCCTGCTGGATACCCTGCCCCGCAAAATAGAGCGTT 36551 ||||| ||||||||||||||||| | | ||| ||| | |||||||| | | || Sbjct 2132 AGCATCTCCCGCTTCATCTGCCAGTCAGGAGCGATGCCCCGTCCCGCAAACCACATT-TT 2074 Query 36552 CCCCTGCCCTGC-TGGTTGAGTCTGTCCATCAGTGACATCAGCGCCTCGCTGTTCGCGCG 36610 |||| |||| | || |||| | ||| | | ||||||||| |||||||| ||||| Sbjct 2073 CCCCAGCCCCGAGTGATTGATGCCGTCGACGGCTTTCATCAGCGCTTCGCTGTTGGCGCG 2014 Query 36611 CGGCGCGTTCTCGTCAAACAGGTTCAGCTGCGCCACGCCCTGGCTGAAAAAGTCACCCAG 36670 ||| ||||||||||| |||| |||| | |||| | | ||||| ||| Sbjct 2013 GGGCTGCACATCGTCAAACAGACTCAGTTGCGATATGCCCGTGGGGGTGAAGTCGTTCAG 1954 Query 36671 CATAACGCCCGCCTTCTGGTACCGGTGGCCGTCGCGCCAGACCGCATCAAGGCAGCCCGT 36730 ||| |||||||| || ||| || || || | ||||| | || | | | Sbjct 1953 CATCACGCCCGCTTTAGCGTAGCGATGACCCGGGACCCAGATGTGGTACAGTGATCGCAC 1894 Query 36731 CGCCGCGGCGATAATGTCGCGCGTGTCCTGTGTGGGCGTCAGGAG--CTTAGTCCCGGCG 36788 || |||||||| || || || || ||||| || ||| | | || ||| | | ||| Sbjct 1893 GGCGGCGGCGATGATATCCCGGGTATCCTGCGTCGGCACCGGCAGGCCTTCG--CTGGCC 1836 Query 36789 TGGTTGCCGTAATACGGTTCA---GCAGAGAACGGCGACGTTTTCACGAACACCGAAATG 36845 || ||||| || |||||| |||| ||||||||| |||||||| ||||| ||| Sbjct 1835 ATATTCCCGTAGTAAGGTTCATTCGCAGCGAACGGCGAGGTTTTCACAAACACACCGATG 1776 Query 36846 TACCGGCAGAACTGATGCTCGCCGCGGAGCTTTTCCGCCGCGCGCGCTGCATAGCTG-CA 36904 | || ||||||||| | |||||||| ||||| ||||||||||| | ||||| ||| || Sbjct 1775 TGCCTGCAGAACTGCCGTTCGCCGCGCAGCTTCTCCGCCGCGCGTTCCGCATA-CTGACA 1717 Query 36905 GATAGCCTGGCGCATCGCTTCATAGTCAGTGATTCGCTCCCCGAATGACCGGCTGCAGAC 36964 || ||||| |||||||| |||||||| ||||| || || || || |||||||||||| Sbjct 1716 GACCGCCTGCCGCATCGCGTCATAGTCCGTGATGCGTTCACCAAAACTCCGGCTGCAGAC 1657 Query 36965 GATTTCCTGTTTTGCCGG-GGCAAACTCCTCGATCTCCAGACAGGGCTCGCCGCGCAGCT 37023 || | ||| |||||||| ||| | || || | | |||| || ||| || | Sbjct 1656 AATCTGCTGCTTTGCCGGTGGCGCA-TCTTCCAGGCTGATACAGCTTTCACCGTTGAGTT 1598 Query 37024 CGCGCACGGTGCGCTCCAGCACGACGTTAAAGTGTTTGCGGATAAA--GCGGATGTCGGT 37081 ||||||| |||||||| || || ||| | || | ||||||||||| ||| ||| || Sbjct 1597 CGCGCACCGTGCGCTCGAGGACCACGCTGAAATTCTTGCGGATAAATGCCGGGTGT--GT 1540 Query 37082 ATCACAGAGCTGCAGTGCATTTTTAATACTCATTGCCTCCAGCTTTCTGGCAATACGCCG 37141 | |||||||| || | | |||| ||| | | |||||| | | | ||| Sbjct 1539 CTGCGCCAGCTGCAGGGCGGTGGTGATACCCATCGTGTTCAGCTTCTTTGATAACTTCCG 1480 Query 37142 GCCGACGCCCCAGACTTCCTCCACCGGC 37169 |||||||||||||| ||| ||||||||| Sbjct 1479 GCCGACGCCCCAGATTTCTTCCACCGGC 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124588440689960