Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq81708 127 2e-24 >seq81708 Length=1085 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 50854 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 50913 |||||||| ||||| | ||||||||||| |||| || ||||| | ||||| || Sbjct 420 GAAGGTGGTCAGCACCTGAACGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTG 361 Query 50914 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 50973 | ||||| |||||||| |||||||| || || || ||||| || ||||| ||||| ||| Sbjct 360 AACCATCCGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTT 301 Query 50974 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGAGAGTCTA 51033 ||| | ||||| || || ||||| || || ||||| | | || ||||| || || || Sbjct 300 AACGCGCTGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTG 241 Query 51034 TAATGGCA 51041 |||| ||| Sbjct 240 TAATTGCA 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557389083683600