Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq13731 161 5e-35 seq11345 93.3 2e-14 seq85186 89.7 3e-13 >seq13731 Length=15303 Score = 161 bits (178), Expect = 5e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25931 TCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCT 25990 ||||| ||||||||||| ||||||| ||||||||||||||||| |||| |||||| Sbjct 1802 TCCATGAATAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCT 1861 Query 25991 TTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAA 26050 ||||| |||||| || | ||| || || ||||||||||||| ||||||||||| || Sbjct 1862 TTTCCAGTATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAG 1921 Query 26051 TAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 || || ||||| || | || || ||||| ||||||||||| | |||| | | Sbjct 1922 TAAATGGCAAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTA 1981 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC 26159 ||||| || ||||||||| || || ||| ||||| || ||||||| Sbjct 1982 TTGAATACCCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGC 2030 >seq11345 Length=19302 Score = 93.3 bits (102), Expect = 2e-14 Identities = 119/163 (73%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 25997 TGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATA 26056 ||||| || || | ||| || || ||||||||||||| || |||||||| || || || Sbjct 11477 TGATTTTTCTTCAAATCCAAAAACTCAAAAATATCTGCATG-CATGGTTCCAAGTAAATG 11419 Query 26057 GCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAA 26116 ||||| || ||||||| ||||| |||||||| || | ||| | |||||| Sbjct 11418 GCAAAGGCGCCAGGCCTTTTTCTACCACCCTGATCTACATAACGAGCAACGTTATTGAAT 11359 Query 26117 ACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC 26159 || ||||||||| || || ||||||||| || ||||||| Sbjct 11358 ACCCGCAACATTGGTACCAAACCAGTTGAAGTGCCATTTGTGC 11316 >seq85186 Length=1023 Score = 89.7 bits (98), Expect = 3e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 ||||| || || ||||| | |||| | | | |||||| || |||||||||| |||||| Sbjct 736 AATTCACCTGATAAAACACGTCTTGTATAAATGTTTGACGTATATGGTTCAAAGCATTCA 795 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 ||| ||| | ||||| || || || |||||||||||| ||| | || || || ||| Sbjct 796 TTAAATCCAAGTATTTGTGACGTTGAGGCTGTTGGCATTGGTGCAACCAAAAGTGAGTTT 855 Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 || |||||| || | ||| | || ||| || Sbjct 856 CTTAAACCACGTTGAGCAACTTTTTCTTTCAA 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252772716220250