Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 161 5e-35
seq11345 93.3 2e-14
seq85186 89.7 3e-13
>seq13731
Length=15303
Score = 161 bits (178), Expect = 5e-35
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 25931 TCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCT 25990
||||| ||||||||||| ||||||| ||||||||||||||||| |||| ||||||
Sbjct 1802 TCCATGAATAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCT 1861
Query 25991 TTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAA 26050
||||| |||||| || | ||| || || ||||||||||||| ||||||||||| ||
Sbjct 1862 TTTCCAGTATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAG 1921
Query 26051 TAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110
|| || ||||| || | || || ||||| ||||||||||| | |||| | |
Sbjct 1922 TAAATGGCAAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTA 1981
Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC 26159
||||| || ||||||||| || || ||| ||||| || |||||||
Sbjct 1982 TTGAATACCCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGC 2030
>seq11345
Length=19302
Score = 93.3 bits (102), Expect = 2e-14
Identities = 119/163 (73%), Gaps = 1/163 (1%)
Strand=Plus/Minus
Query 25997 TGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATA 26056
||||| || || | ||| || || ||||||||||||| || |||||||| || || ||
Sbjct 11477 TGATTTTTCTTCAAATCCAAAAACTCAAAAATATCTGCATG-CATGGTTCCAAGTAAATG 11419
Query 26057 GCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAA 26116
||||| || ||||||| ||||| |||||||| || | ||| | ||||||
Sbjct 11418 GCAAAGGCGCCAGGCCTTTTTCTACCACCCTGATCTACATAACGAGCAACGTTATTGAAT 11359
Query 26117 ACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC 26159
|| ||||||||| || || ||||||||| || |||||||
Sbjct 11358 ACCCGCAACATTGGTACCAAACCAGTTGAAGTGCCATTTGTGC 11316
>seq85186
Length=1023
Score = 89.7 bits (98), Expect = 3e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075
||||| || || ||||| | |||| | | | |||||| || |||||||||| ||||||
Sbjct 736 AATTCACCTGATAAAACACGTCTTGTATAAATGTTTGACGTATATGGTTCAAAGCATTCA 795
Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135
||| ||| | ||||| || || || |||||||||||| ||| | || || || |||
Sbjct 796 TTAAATCCAAGTATTTGTGACGTTGAGGCTGTTGGCATTGGTGCAACCAAAAGTGAGTTT 855
Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAA 25167
|| |||||| || | ||| | || ||| ||
Sbjct 856 CTTAAACCACGTTGAGCAACTTTTTCTTTCAA 887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252772716220250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |