Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1573 131 2e-25 seq7596 111 2e-19 >seq1573 Length=117888 Score = 131 bits (144), Expect = 2e-25 Identities = 200/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || ||||| |||||||| ||| | |||| || ||| ||||| | |||||||||||| Sbjct 12579 CCAGTGGCGATAACAAAGTCAGCTGGTTTCTCACATTGTAGCATCATCCACATAGCCTCT 12638 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || || || |||| || ||||| ||||| | ||||||||| |||| | || | Sbjct 12639 ACGTAGTCCATGGCGTGGCCCCAATCACGCTTCGAATCAAGATTACCTAATTCGAACGAT 12698 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTT 47967 || | | || | | ||||| | || | || || || || || |||||| || Sbjct 12699 TCCAGTTGGCCGTGAAAGATTTTCGCAACTGACCGAGTTATTTTGCGTGTAACAAAATTT 12758 Query 47968 TCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTAT 48027 ||||| || | || ||||||||||| || | |||||| | |||||| |||| ||||| Sbjct 12759 TCACCTCGACGCGGTGATTCATGATTGAATAAAATACCGTTGCAGGCAAACATATCGTAT 12818 Query 48028 GATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCA 48072 | ||| |||||||| | || ||||| | ||||| | ||| ||| Sbjct 12819 GCTTCGCGATAGTTAATCACAATCCAAAAGCCATACATTTTCGCA 12863 >seq7596 Length=30452 Score = 111 bits (122), Expect = 2e-19 Identities = 278/417 (67%), Gaps = 13/417 (3%) Strand=Plus/Minus Query 47758 TCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCT 47817 || ||||||| || || |||| | ||| |||||||| ||||| || || || | | Sbjct 25534 TCGACAAACTCTCGCACTGAATGCGCTTCTCCAGTGGCAATGACAAAGTCGTCCGGGTGT 25475 Query 47818 TCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGA 47877 ||||| || | ||| | |||||| || || || || || | ||||| |||||||| || Sbjct 25474 TCTTGCTGCATCATAATCCACATGGCTTCAACGTAGTCACGAGCATGGCCCCAGTCTCGT 25415 Query 47878 AGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT--- 47934 | || || || || || | | | || |||| || || || | | | || Sbjct 25414 TTCGAGTCGAGGTTGCCCAGCTCGATGAATTCCTGCT---CTCCA-AGGTAGATCTTCGC 25359 Query 47935 -AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATT 47993 | ||| || || || | || ||||||||||| || | | || |||||||| || Sbjct 25358 CACACCTCGGGTGATTTTTCTGGTCACAAAAGTTTCGCCTCTACGAGGTGATTCATGGTT 25299 Query 47994 AAAAAGAATACCACT-ACAGGCATACA---TTCCGTATGATTCACGATAGTTCTTTACTA 48049 || || || ||| | ||| ||| ||| || |||||| || || || || || | Sbjct 25298 GAATAGGATTCCATTCACA-GCAAACAGACTTGGGTATGACTCGCGGTAATTGACGACAA 25240 Query 48050 TCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCT 48109 ||||||| | || ||||| || || || || || || || ||||| || ||||||| Sbjct 25239 TCCAGTAGGCGTACGCCTTTGCGACTCCGTACGGGGATCGAGGGTAGAATGGAGTGGTCT 25180 Query 48110 CTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 || ||| || |||| || || || ||| |||| ||| ||| |||||||||| Sbjct 25179 CTCGCTGGGGGATCTCCTGTACTTTCCCAAAAAGCTCAGAAGTGCTGGCTTGATAGA 25123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664773420004400