Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 118 1e-21
seq3737 109 7e-19
seq40302 105 8e-18
seq85186 91.5 2e-13
>seq13731
Length=15303
Score = 118 bits (130), Expect = 1e-21
Identities = 700/1106 (63%), Gaps = 38/1106 (3%)
Strand=Plus/Minus
Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561
||| |||||||| ||| ||||| | | |||||| | || ||||| || | ||
Sbjct 2032 GGGCACAAATGGCACTTCAAATGGTTTGGTACCAATGTTGCGGGTATTCAATAACGTTGC 1973
Query 75562 GCGCTATGTAAATCAAGCGGGGCGTCGCAAGGGGTC------CATCGCGGTCTACTTGGA 75615
|| || ||| |||| ||| || ||||| || | | | || | ||||||||
Sbjct 1972 ACGTTACGTAGATCA---GGGTGGTGGCAAGCGGCCTGGCGCCTTTGCCATTTACTTGGA 1916
Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAG 75674
|||||||||||| ||||| | ||||| | || || | || | | || | ||||
Sbjct 1915 ACCATGGCATGCAGATATTTTTGAGTTTTTGGATTTGAAGAAGAATACT-GGAAAAGAAG 1857
Query 75675 AGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734
|| || |||||| | |||| | ||||||| ||||| | |||||| | || |
Sbjct 1856 AGCACCGAGCCAGAGATTTATTTTATGCTTTGTGGATACCAGATTTATTCATGGAACGTG 1797
Query 75735 TTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG 75794
| || | || | ||||| | | |||||| | || || || || | |
Sbjct 1796 TGGAAGCTAACGGAGAGTGGTCATTGATGTGTCCACATAAATGTCCTGG---CTTACATG 1740
Query 75795 CGGT---GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCA 75851
||| ||| || || || ||| | || |||||||||||| |||| || | || |
Sbjct 1739 AGGTTTGGGGCGAAGAATTCGAAAAATTATATACAAAGTATGAAAAGGAAGGACGCGCTA 1680
Query 75852 ATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911
|| ||| || ||| | ||||| || || | |||| ||| |||||| |
Sbjct 1679 ATAAGACGGTGAAAGCTCAAAGTCTTTGGTTCGCCATCATTGAATCCCAGGTGGAGACCG 1620
Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971
| ||||| |||||| | ||||||||||| ||||| | || ||||| || | ||| | |
Sbjct 1619 GTACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATCAGCAAAATATTG 1560
Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031
| || || || || ||||| ||||| |||||| | || || | | ||||||
Sbjct 1559 GCACCATTAAATGCAGCAATCTATGCACTGAAATTGTCGAATATTCTGCACCTGATGAGG 1500
Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAGAGACTC 76088
|||||| ||||| || ||||||||||| | | || ||||| |||| |
Sbjct 1499 TGGCTGTATGCAACTTAGCATCAATCGCTTTGAACATGTTTGTCACACCTGAAAA----- 1445
Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148
|||| |||| || || | ||| |||| || | ||| || |||| | ||
Sbjct 1444 -AACTTACGATTTCCAACGGCTCAAGGAAGTCACCAAAACTGTGACACGAAATTTGAATA 1386
Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATGCGACA 76206
| ||||||| | |||| || ||| ||| || || ||| || || | ||||
Sbjct 1385 AAATCATTGAAATAAATCACTA-CCCATTGCCCGA-GGCAAAAAAATCAAACTTTAGACA 1328
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACG 76265
| | || || || | || || |||||| | || || | |||| || || |||||
Sbjct 1327 CCGTCCAATCGGGATCGGCGTACAAGGTTTTGCAGACGCTCTTATACTTATG-CGCTATC 1269
Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325
| | || || |||| | ||| | | || |||||||| ||| | |
Sbjct 1268 CGTACGAAAGCGAACAAGCATTCCTTTTAAATCAACAGGTTTTCGAAACCATTTATTATG 1209
Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385
| | || || ||||||||||||||||| | ||| ||||||| || | ||| |
Sbjct 1208 GTGCATTAGAAGCTAGTTGTGAATTGGCTGAGAAATACGGTACCTATGAAACTTATGAAG 1149
Query 76386 GTTCTCCCGCGTCCCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTC 76444
| | ||| | | |||||| | || || | ||| ||||||| | ||| || | ||
Sbjct 1148 GCTGTCCAG-TTAGCAAGGGAATTCTACAATATGACATGTGGG-ATAAGAAGCCCA-CTG 1092
Query 76445 AACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502
| || | ||||| | | ||||| || || || | ||| || | || |
Sbjct 1091 AGCTCTGGAACTGGACAGAATTGAAGGAGAAAATTAAACAGCATGGTGTTAGGAATTCCC 1032
Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 76562
| || | ||||| ||||| || || || || || |||||| |||| |||||||| | |
Sbjct 1031 TCCTGCTTGCACCTATGCCCACCGCTTCAACTGCGCAAATCATGGGCAATAATGAGTCAT 972
Query 76563 TTGAACCATACACAACAAACATCTAC 76588
| ||||| ||||| | |||||||||
Sbjct 971 TCGAACCCTACACTTCTAACATCTAC 946
>seq3737
Length=58963
Score = 109 bits (120), Expect = 7e-19
Identities = 280/418 (67%), Gaps = 14/418 (3%)
Strand=Plus/Plus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
||||||||||| ||| ||| ||| | || | || || || || || || || |
Sbjct 32737 GGTGCCAAGATTCCCAAAGGTGCCTTGCTGACTGGCCCACCTGGAACCGGCAAAACGTTA 32796
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCA-TCCAGTGCTCTGCCGCAAA 175394
|| ||| ||||| || || ||| |||| || || |||| | |||| |||| | | |
Sbjct 32797 CTAGCCAAAGCCACTGCTGGCGAAGCAAAAGTGCCTTTCATTTCAGT-TTCTGGCTCGGA 32855
Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454
||| ||||||||||||| || |||||| | | | ||||| ||| | |||| || ||
Sbjct 32856 GTTTTTGGAGATGTTTGTGGGCGTGGGTCCTAGTCGAGTTCGTGATATGTTTGCCATGGC 32915
Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514
||| | || || || || |||||||||| || ||||| ||||| || || |
Sbjct 32916 TCGCAAGAACGCCCCGTGCATCCTCTTCATTGACGAAATTGACGCGGTCGG--TCGAAAG 32973
Query 175515 CAGCGCTGGT----GGTATGCCAGCAAAT--GACGAGAGAGAACAAACAATTAATCAACT 175568
| ||| |||| | | || | || | | || || |||||| || | ||||| ||
Sbjct 32974 C-GCGGTGGTCGCAGCTTTGGCGGCCACTCGGAGCAG-GAGAAC--ACGCTCAATCAGCT 33029
Query 175569 ACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628
||| |||||||| ||||| ||| | | | || || |||| ||||| ||
Sbjct 33030 GCTCGTGGAGATGGACGGCTTCAACACCTCCTCGAACGTGGTCGTACTTGCCGCCACCAA 33089
Query 175629 TCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATC 175686
|| ||||| || || || | || || |||||||| ||||| ||||| || |||||
Sbjct 33090 CCGAGTGGACATTCTCGACAAGGCACTACTTCGCCCAGGTCGCTTTGACCGACAGATC 33147
>seq40302
Length=2817
Score = 105 bits (116), Expect = 8e-18
Identities = 354/533 (66%), Gaps = 21/533 (4%)
Strand=Plus/Minus
Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055
|||||||| || | || || | | |||||||||||| ||||| ||| ||| | |
Sbjct 2470 GCCATCCAGACGATGCCCTGCGTCGCGAAGAAGGCGAAGTGGGCCATGGCCTGGACGGCC 2411
Query 65056 AC--AAAGTCTCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112
| ||| ||| |||| ||||||||||| | || || || |||||||| |||
Sbjct 2410 GCCGAAAACGGCGCCACCTTTGCCGAGCGCCTCGTCGCCTTCGCCGCCGTGGAGGGCATC 2351
Query 65113 TTCTTCTCCGGGTCATTCTGC--GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAG 65170
|||||| ||| || || ||| || || | |||| |||||||||| || || ||||| |
Sbjct 2350 TTCTTCAGCGGCTCCTT-TGCCAGC-ATCTTTTGGCTGAAGAAGCGCGGCCTGATGCCGG 2293
Query 65171 GCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCG 65230
|||| |||| ||||| || || ||| || ||||| || ||| || ||||||
Sbjct 2292 GCCTGACCTTCAGCAATGAGCTGATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCT 2233
Query 65231 TGGAGCTC-TTCAAGACTTTGCGTAATAGACCCACTACCGA--AACTATCCACGC-CATC 65286
||| ||| || || || ||| | || ||| | | || |||
Sbjct 2232 GTCTCCTCTTTCGCCAC-CTGATTA--AGAAGCCGTA-CGATGAGCGGGTGGTGCAGATC 2177
Query 65287 GTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTC 65346
| || ||||| || || ||| | | |||| || ||||| || || |||
Sbjct 2176 ATCAACGAGGCCGTCCGCATCGAGCAGGAGTTCCTCACTGACGCCCTTCCGGTCGCCCTC 2117
Query 65347 ATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTA-TGTGTCGGATCGTCTCCT 65405
|| || |||||| ||| ||||||| |||||||||||| || | | || || || ||
Sbjct 2116 ATTGGCATGAACAACGAGCTGATGTCCACGTACATTGAGTACTGCG-CCGACCGGCTGCT 2058
Query 65406 CAAACAAGTTGGGGTGCCACCCATT--TGGAACGCGAAGAATCCATTTGACTTTATGGAA 65463
| | || |||| || | | | |||| |||||||| |||||||| |||||
Sbjct 2057 GGTGGAGCTCGGCGTGC--CCAAGTACTACAACGTCAAGAATCCCTTTGACTTCATGGAG 2000
Query 65464 AACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
| || ||||| || || |||||||| |||||||||||||| || || || ||
Sbjct 1999 CAGATCAGCCTGGAGGGAAAGACCAATTTCTTTGAGAAGCGCGTCGGCGAGTA 1947
>seq85186
Length=1023
Score = 91.5 bits (100), Expect = 2e-13
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATG 76560
|||||| | |||||||||||||||||||| || ||||||| ||||| | |||||||||
Sbjct 848 CTTTTGGTTGCACCAATGCCAACAGCCTCAACGTCACAAATACTTGGATT-TAATGAATG 790
Query 76561 CTTTGAACCATACACAACAAACATCTA 76587
|||||||||||| || ||||||| ||
Sbjct 789 CTTTGAACCATATACGTCAAACATTTA 763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595923291409600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |