Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq13731 118 1e-21 seq3737 109 7e-19 seq40302 105 8e-18 seq85186 91.5 2e-13 >seq13731 Length=15303 Score = 118 bits (130), Expect = 1e-21 Identities = 700/1106 (63%), Gaps = 38/1106 (3%) Strand=Plus/Minus Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 ||| |||||||| ||| ||||| | | |||||| | || ||||| || | || Sbjct 2032 GGGCACAAATGGCACTTCAAATGGTTTGGTACCAATGTTGCGGGTATTCAATAACGTTGC 1973 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTCGCAAGGGGTC------CATCGCGGTCTACTTGGA 75615 || || ||| |||| ||| || ||||| || | | | || | |||||||| Sbjct 1972 ACGTTACGTAGATCA---GGGTGGTGGCAAGCGGCCTGGCGCCTTTGCCATTTACTTGGA 1916 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAG 75674 |||||||||||| ||||| | ||||| | || || | || | | || | |||| Sbjct 1915 ACCATGGCATGCAGATATTTTTGAGTTTTTGGATTTGAAGAAGAATACT-GGAAAAGAAG 1857 Query 75675 AGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734 || || |||||| | |||| | ||||||| ||||| | |||||| | || | Sbjct 1856 AGCACCGAGCCAGAGATTTATTTTATGCTTTGTGGATACCAGATTTATTCATGGAACGTG 1797 Query 75735 TTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG 75794 | || | || | ||||| | | |||||| | || || || || | | Sbjct 1796 TGGAAGCTAACGGAGAGTGGTCATTGATGTGTCCACATAAATGTCCTGG---CTTACATG 1740 Query 75795 CGGT---GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCA 75851 ||| ||| || || || ||| | || |||||||||||| |||| || | || | Sbjct 1739 AGGTTTGGGGCGAAGAATTCGAAAAATTATATACAAAGTATGAAAAGGAAGGACGCGCTA 1680 Query 75852 ATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911 || ||| || ||| | ||||| || || | |||| ||| |||||| | Sbjct 1679 ATAAGACGGTGAAAGCTCAAAGTCTTTGGTTCGCCATCATTGAATCCCAGGTGGAGACCG 1620 Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971 | ||||| |||||| | ||||||||||| ||||| | || ||||| || | ||| | | Sbjct 1619 GTACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATCAGCAAAATATTG 1560 Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 | || || || || ||||| ||||| |||||| | || || | | |||||| Sbjct 1559 GCACCATTAAATGCAGCAATCTATGCACTGAAATTGTCGAATATTCTGCACCTGATGAGG 1500 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAGAGACTC 76088 |||||| ||||| || ||||||||||| | | || ||||| |||| | Sbjct 1499 TGGCTGTATGCAACTTAGCATCAATCGCTTTGAACATGTTTGTCACACCTGAAAA----- 1445 Query 76089 GCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 |||| |||| || || | ||| |||| || | ||| || |||| | || Sbjct 1444 -AACTTACGATTTCCAACGGCTCAAGGAAGTCACCAAAACTGTGACACGAAATTTGAATA 1386 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATGCGACA 76206 | ||||||| | |||| || ||| ||| || || ||| || || | |||| Sbjct 1385 AAATCATTGAAATAAATCACTA-CCCATTGCCCGA-GGCAAAAAAATCAAACTTTAGACA 1328 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACG 76265 | | || || || | || || |||||| | || || | |||| || || ||||| Sbjct 1327 CCGTCCAATCGGGATCGGCGTACAAGGTTTTGCAGACGCTCTTATACTTATG-CGCTATC 1269 Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 | | || || |||| | ||| | | || |||||||| ||| | | Sbjct 1268 CGTACGAAAGCGAACAAGCATTCCTTTTAAATCAACAGGTTTTCGAAACCATTTATTATG 1209 Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385 | | || || ||||||||||||||||| | ||| ||||||| || | ||| | Sbjct 1208 GTGCATTAGAAGCTAGTTGTGAATTGGCTGAGAAATACGGTACCTATGAAACTTATGAAG 1149 Query 76386 GTTCTCCCGCGTCCCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTC 76444 | | ||| | | |||||| | || || | ||| ||||||| | ||| || | || Sbjct 1148 GCTGTCCAG-TTAGCAAGGGAATTCTACAATATGACATGTGGG-ATAAGAAGCCCA-CTG 1092 Query 76445 AACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502 | || | ||||| | | ||||| || || || | ||| || | || | Sbjct 1091 AGCTCTGGAACTGGACAGAATTGAAGGAGAAAATTAAACAGCATGGTGTTAGGAATTCCC 1032 Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 76562 | || | ||||| ||||| || || || || || |||||| |||| |||||||| | | Sbjct 1031 TCCTGCTTGCACCTATGCCCACCGCTTCAACTGCGCAAATCATGGGCAATAATGAGTCAT 972 Query 76563 TTGAACCATACACAACAAACATCTAC 76588 | ||||| ||||| | ||||||||| Sbjct 971 TCGAACCCTACACTTCTAACATCTAC 946 >seq3737 Length=58963 Score = 109 bits (120), Expect = 7e-19 Identities = 280/418 (67%), Gaps = 14/418 (3%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||| ||| ||| ||| | || | || || || || || || || | Sbjct 32737 GGTGCCAAGATTCCCAAAGGTGCCTTGCTGACTGGCCCACCTGGAACCGGCAAAACGTTA 32796 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCA-TCCAGTGCTCTGCCGCAAA 175394 || ||| ||||| || || ||| |||| || || |||| | |||| |||| | | | Sbjct 32797 CTAGCCAAAGCCACTGCTGGCGAAGCAAAAGTGCCTTTCATTTCAGT-TTCTGGCTCGGA 32855 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||| ||||||||||||| || |||||| | | | ||||| ||| | |||| || || Sbjct 32856 GTTTTTGGAGATGTTTGTGGGCGTGGGTCCTAGTCGAGTTCGTGATATGTTTGCCATGGC 32915 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 ||| | || || || || |||||||||| || ||||| ||||| || || | Sbjct 32916 TCGCAAGAACGCCCCGTGCATCCTCTTCATTGACGAAATTGACGCGGTCGG--TCGAAAG 32973 Query 175515 CAGCGCTGGT----GGTATGCCAGCAAAT--GACGAGAGAGAACAAACAATTAATCAACT 175568 | ||| |||| | | || | || | | || || |||||| || | ||||| || Sbjct 32974 C-GCGGTGGTCGCAGCTTTGGCGGCCACTCGGAGCAG-GAGAAC--ACGCTCAATCAGCT 33029 Query 175569 ACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 ||| |||||||| ||||| ||| | | | || || |||| ||||| || Sbjct 33030 GCTCGTGGAGATGGACGGCTTCAACACCTCCTCGAACGTGGTCGTACTTGCCGCCACCAA 33089 Query 175629 TCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATC 175686 || ||||| || || || | || || |||||||| ||||| ||||| || ||||| Sbjct 33090 CCGAGTGGACATTCTCGACAAGGCACTACTTCGCCCAGGTCGCTTTGACCGACAGATC 33147 >seq40302 Length=2817 Score = 105 bits (116), Expect = 8e-18 Identities = 354/533 (66%), Gaps = 21/533 (4%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||||| || | || || | | |||||||||||| ||||| ||| ||| | | Sbjct 2470 GCCATCCAGACGATGCCCTGCGTCGCGAAGAAGGCGAAGTGGGCCATGGCCTGGACGGCC 2411 Query 65056 AC--AAAGTCTCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | ||| ||| |||| ||||||||||| | || || || |||||||| ||| Sbjct 2410 GCCGAAAACGGCGCCACCTTTGCCGAGCGCCTCGTCGCCTTCGCCGCCGTGGAGGGCATC 2351 Query 65113 TTCTTCTCCGGGTCATTCTGC--GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAG 65170 |||||| ||| || || ||| || || | |||| |||||||||| || || ||||| | Sbjct 2350 TTCTTCAGCGGCTCCTT-TGCCAGC-ATCTTTTGGCTGAAGAAGCGCGGCCTGATGCCGG 2293 Query 65171 GCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCG 65230 |||| |||| ||||| || || ||| || ||||| || ||| || |||||| Sbjct 2292 GCCTGACCTTCAGCAATGAGCTGATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCT 2233 Query 65231 TGGAGCTC-TTCAAGACTTTGCGTAATAGACCCACTACCGA--AACTATCCACGC-CATC 65286 ||| ||| || || || ||| | || ||| | | || ||| Sbjct 2232 GTCTCCTCTTTCGCCAC-CTGATTA--AGAAGCCGTA-CGATGAGCGGGTGGTGCAGATC 2177 Query 65287 GTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTC 65346 | || ||||| || || ||| | | |||| || ||||| || || ||| Sbjct 2176 ATCAACGAGGCCGTCCGCATCGAGCAGGAGTTCCTCACTGACGCCCTTCCGGTCGCCCTC 2117 Query 65347 ATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTA-TGTGTCGGATCGTCTCCT 65405 || || |||||| ||| ||||||| |||||||||||| || | | || || || || Sbjct 2116 ATTGGCATGAACAACGAGCTGATGTCCACGTACATTGAGTACTGCG-CCGACCGGCTGCT 2058 Query 65406 CAAACAAGTTGGGGTGCCACCCATT--TGGAACGCGAAGAATCCATTTGACTTTATGGAA 65463 | | || |||| || | | | |||| |||||||| |||||||| ||||| Sbjct 2057 GGTGGAGCTCGGCGTGC--CCAAGTACTACAACGTCAAGAATCCCTTTGACTTCATGGAG 2000 Query 65464 AACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || ||||| || || |||||||| |||||||||||||| || || || || Sbjct 1999 CAGATCAGCCTGGAGGGAAAGACCAATTTCTTTGAGAAGCGCGTCGGCGAGTA 1947 >seq85186 Length=1023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATG 76560 |||||| | |||||||||||||||||||| || ||||||| ||||| | ||||||||| Sbjct 848 CTTTTGGTTGCACCAATGCCAACAGCCTCAACGTCACAAATACTTGGATT-TAATGAATG 790 Query 76561 CTTTGAACCATACACAACAAACATCTA 76587 |||||||||||| || ||||||| || Sbjct 789 CTTTGAACCATATACGTCAAACATTTA 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595923291409600